Structure and Functions of the Bacterial Microbiota of Plants

Forward GeneticIn PlantaScreen for Identification of Plant-Protective Traits of Sphingomonas sp. Strain Fr1 against Pseudomonas syringae DC3000

(2012) Christine Vogel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Chemical warfare or modulators of defence responses – the function of secondary metabolites in plant immunity

(2012) Paweł Bednarek   CURRENT OPINION IN PLANT BIOLOGY

Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce

(2012) Gurdeep Rastogi et al.   ISME Journal

Exploring Biodiversity in the Bacterial Community of the Mediterranean Phyllosphere and its Relationship with Airborne Bacteria

(2012) Despoina Vokou et al.   MICROBIAL ECOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Indole derivative production by the root endophyte Piriformospora indica is not required for growth promotion but for biotrophic colonization of barley roots

(2012) Magdalena Hilbert et al.   NEW PHYTOLOGIST

Culturing a plant microbiome community at the cross-Rhodes

(2012) Sarah L. Lebeis et al.   NEW PHYTOLOGIST

Benzoxazinoids in Root Exudates of Maize Attract Pseudomonas putida to the Rhizosphere

(2012) Andrew L. Neal et al.   PLoS One

Endophytic Insect-Parasitic Fungi Translocate Nitrogen Directly from Insects to Plants

(2012) S. W. Behie et al.   SCIENCE

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

(2012) Joyce E. Loper et al.   PLoS Genetics

A Coevolutionary Framework for Managing Disease-Suppressive Soils

(2011) Linda L. Kinkel et al.   Annual Review of Phytopathology

Geographical Location Determines the Population Structure in Phyllosphere Microbial Communities of a Salt-Excreting Desert Tree

(2011) Omri M. Finkel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Protection of Arabidopsis thaliana against Leaf-Pathogenic Pseudomonas syringae by Sphingomonas Strains in a Controlled Model System

(2011) Gerd Innerebner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Distinct Microbial Communities within the Endosphere and Rhizosphere of Populus deltoides Roots across Contrasting Soil Types

(2011) Neil R. Gottel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Functional genomics analysis of plant growth-promoting rhizobacterial traits involved in rhizosphere competence

(2011) Matthieu Barret et al.   BIOLOGY AND FERTILITY OF SOILS

CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing

(2011) Samuel V Angiuoli et al.   BMC BIOINFORMATICS

An experience report: porting the MG-RAST rapid metagenomics analysis pipeline to the cloud

(2011) Andreas Wilke et al.   CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE

Plant protection and growth stimulation by microorganisms: biotechnological applications of Bacilli in agriculture

(2011) Alejandro Pérez-García et al.   CURRENT OPINION IN BIOTECHNOLOGY

Production of plant growth modulating volatiles is widespread among rhizosphere bacteria and strongly depends on culture conditions

(2011) D. Blom et al.   ENVIRONMENTAL MICROBIOLOGY

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

(2011) Claudia Knief et al.   ISME Journal

Changes in spinach phylloepiphytic bacteria communities following minimal processing and refrigerated storage described using pyrosequencing of 16S rRNA amplicons

(2011) G. Lopez-Velasco et al.   JOURNAL OF APPLIED MICROBIOLOGY

Endophytes of Grapevine Flowers, Berries, and Seeds: Identification of Cultivable Bacteria, Comparison with Other Plant Parts, and Visualization of Niches of Colonization

(2011) Stéphane Compant et al.   MICROBIAL ECOLOGY

Microbial Diversity Inside Pumpkins: Microhabitat-Specific Communities Display a High Antagonistic Potential Against Phytopathogens

(2011) Michael Fürnkranz et al.   MICROBIAL ECOLOGY

Plant-beneficial effects of Trichoderma and of its genes

(2011) R. Hermosa et al.   MICROBIOLOGY-SGM

Correlative microscopy: Providing new understanding in the biomedical and plant sciences

(2011) K.A. Jahn et al.   MICRON

Is diversification history of maize influencing selection of soil bacteria by roots?

(2011) MARIE-LARA BOUFFAUD et al.   MOLECULAR ECOLOGY

Phosphate Import at the Arbuscule: Just a Nutrient?

(2011) Shu-Yi Yang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Growth Promotion of Chinese Cabbage andArabidopsisbyPiriformospora indicaIs Not Stimulated by Mycelium-Synthesized Auxin

(2011) Yin-Chen Lee et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A Plant Arabinogalactan-Like Glycoprotein Promotes a Novel Type of Polar Surface Attachment byRhizobium leguminosarum

(2011) Fang Xie et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Functional Characteristics of an Endophyte Community Colonizing Rice Roots as Revealed by Metagenomic Analysis

(2011) A. Sessitsch et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Modulation of Host Immunity by Beneficial Microbes

(2011) Christos Zamioudis et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Evidence from field nitrogen balance and 15N natural abundance data for the contribution of biological N2 fixation to Brazilian sugarcane varieties

(2011) Segundo Urquiaga et al.   PLANT AND SOIL

Composition of epiphytic bacterial communities differs on petals and leaves

(2011) R. R. Junker et al.   PLANT BIOLOGY

TheArabidopsisYUCCA1 Flavin Monooxygenase Functions in the Indole-3-Pyruvic Acid Branch of Auxin Biosynthesis

(2011) Anna N. Stepanova et al.   PLANT CELL

N-Acyl-Homoserine Lactone Confers Resistance toward Biotrophic and Hemibiotrophic Pathogens via Altered Activation of AtMPK6

(2011) A. Schikora et al.   PLANT PHYSIOLOGY

Conservation and Diversity of Seed Associated Endophytes in Zea across Boundaries of Evolution, Ethnography and Ecology

(2011) David Johnston-Monje et al.   PLoS One

Comparative Analysis of Bacterial Communities in a Potato Field as Determined by Pyrosequencing

(2011) Özgül İnceoğlu et al.   PLoS One

Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF ARABIDOPSIS and YUCCAs in Arabidopsis

(2011) C. Won et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The main auxin biosynthesis pathway in Arabidopsis

(2011) K. Mashiguchi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Rhizosphere interactions between microorganisms and plants govern iron and phosphorus acquisition along the root axis – model and research methods

(2011) Petra Marschner et al.   SOIL BIOLOGY & BIOCHEMISTRY

A molecular evolutionary concept connecting nonhost resistance, pathogen host range, and pathogen speciation

(2011) Paul Schulze-Lefert et al.   TRENDS IN PLANT SCIENCE

Induced Systemic Resistance and Plant Responses to Fungal Biocontrol Agents

(2010) Michal Shoresh et al.   Annual Review of Phytopathology

Annual Variations in the Diversity, Viability, and Origin of Airborne Bacteria

(2010) C. Fahlgren et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effects of Plant Genotype and Growth Stage on the Betaproteobacterial Communities Associated with Different Potato Cultivars in Two Fields

(2010) O. Inceoglu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Temporal dynamics and genetic diversity of chemotactic-competent microbial populations in the rhizosphere

(2010) Alison Buchan et al.   ENVIRONMENTAL MICROBIOLOGY

The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves

(2010) Amanda J. Redford et al.   ENVIRONMENTAL MICROBIOLOGY

Are root exudates more important than other sources of rhizodeposits in structuring rhizosphere bacterial communities?

(2010) Paul G. Dennis et al.   FEMS MICROBIOLOGY ECOLOGY

PhyloChip hybridization uncovered an enormous bacterial diversity in the rhizosphere of different potato cultivars: many common and few cultivar-dependent taxa

(2010) Nicole Weinert et al.   FEMS MICROBIOLOGY ECOLOGY

Pyrosequencing Reveals a Highly Diverse and Cultivar-Specific Bacterial Endophyte Community in Potato Roots

(2010) Daniel K. Manter et al.   MICROBIAL ECOLOGY

ThePseudomonasSecondary Metabolite 2,4-Diacetylphloroglucinol Is a Signal Inducing Rhizoplane Expression ofAzospirillumGenes Involved in Plant-Growth Promotion

(2010) Emeline Combes-Meynet et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Mrt, a Gene Unique to Fungi, Encodes an Oligosaccharide Transporter and Facilitates Rhizosphere Competency in Metarhizium robertsii

(2010) W. Fang et al.   PLANT PHYSIOLOGY

Microbiome Profiling by Illumina Sequencing of Combinatorial Sequence-Tagged PCR Products

(2010) Gregory B. Gloor et al.   PLoS One

Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil

(2010) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

When metagenomics meets stable-isotope probing: progress and perspectives

(2010) Yin Chen et al.   TRENDS IN MICROBIOLOGY

Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil

(2010) Stéphane Uroz et al.   Environmental Microbiology Reports

Odyssey of Auxin

(2010) S. Abel et al.   Cold Spring Harbor Perspectives in Biology

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Plant-Growth-Promoting Rhizobacteria

(2009) Ben Lugtenberg et al.   Annual Review of Microbiology

A Renaissance of Elicitors: Perception of Microbe-Associated Molecular Patterns and Danger Signals by Pattern-Recognition Receptors

(2009) Thomas Boller et al.   Annual Review of Plant Biology

Rhizosphere Communities of Genetically Modified Zeaxanthin-Accumulating Potato Plants and Their Parent Cultivar Differ Less than Those of Different Potato Cultivars

(2009) N. Weinert et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Plant–microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture

(2009) Gabriele Berg   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Global patterns in belowground communities

(2009) Noah Fierer et al.   ECOLOGY LETTERS

Exogenous glucosinolate produced by Arabidopsis thaliana has an impact on microbes in the rhizosphere and plant roots

(2009) Mélanie Bressan et al.   ISME Journal

Influence of Arabidopsis thaliana accessions on rhizobacterial communities and natural variation in root exudates

(2009) Shirley A. Micallef et al.   JOURNAL OF EXPERIMENTAL BOTANY

The nature of selection during plant domestication

(2009) Michael D. Purugganan et al.   NATURE

Recent advances and emerging trends in plant hormone signalling

(2009) Aaron Santner et al.   NATURE

Iron dynamics in the rhizosphere as a case study for analyzing interactions between soils, plants and microbes

(2009) Philippe Lemanceau et al.   PLANT AND SOIL

Carbon flow in the rhizosphere: carbon trading at the soil–root interface

(2009) D. L. Jones et al.   PLANT AND SOIL

In Situ Mapping of Nutrient Uptake in the Rhizosphere Using Nanoscale Secondary Ion Mass Spectrometry

(2009) P. L. Clode et al.   PLANT PHYSIOLOGY

An ABC Transporter Mutation Alters Root Exudation of Phytochemicals That Provoke an Overhaul of Natural Soil Microbiota

(2009) D. V. Badri et al.   PLANT PHYSIOLOGY

Belowground volatiles facilitate interactions between plant roots and soil organisms

(2009) Katrin Wenke et al.   PLANTA

Community proteogenomics reveals insights into the physiology of phyllosphere bacteria

(2009) N. Delmotte et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reprogramming Plant Cells for Endosymbiosis

(2009) G. E. D. Oldroyd et al.   SCIENCE

Innate Immunity in Plants: An Arms Race Between Pattern Recognition Receptors in Plants and Effectors in Microbial Pathogens

(2009) T. Boller et al.   SCIENCE

Homing in on iron homeostasis in plants

(2009) Jeeyon Jeong et al.   TRENDS IN PLANT SCIENCE

The exopolysaccharide ofRhizobiumsp. YAS34 is not necessary for biofilm formation onArabidopsis thalianaandBrassica napusroots but contributes to root colonization

(2008) Catherine Santaella et al.   ENVIRONMENTAL MICROBIOLOGY

Selective progressive response of soil microbial community to wild oat roots

(2008) Kristen M DeAngelis et al.   ISME Journal

Phyllosphere microbiology with special reference to diversity and plant genotype

(2008) J.M. Whipps et al.   JOURNAL OF APPLIED MICROBIOLOGY

Aerobic Nitric Oxide Production byAzospirillum brasilenseSp245 and Its Influence on Root Architecture in Tomato

(2008) Celeste Molina-Favero et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Inter-kingdom signalling: communication between bacteria and their hosts

(2008) David T. Hughes et al.   NATURE REVIEWS MICROBIOLOGY

Effects of Azospirillum brasilense indole-3-acetic acid production on inoculated wheat plants

(2008) Stijn Spaepen et al.   PLANT AND SOIL

Novel approaches in plant breeding for rhizosphere-related traits

(2008) Matthias Wissuwa et al.   PLANT AND SOIL

N-acyl-L-homoserine lactones: a class of bacterial quorum-sensing signals alter post-embryonic root development inArabidopsis thaliana

(2008) RANDY ORTÍZ-CASTRO et al.   PLANT CELL AND ENVIRONMENT