Metagenomic analysis exploring taxonomic and functional diversity of soil microbial communities in Chilean vineyards and surrounding native forests

Shifts in the composition and potential functions of soil microbial communities responding to a no-tillage practice and bagasse mulching on a sugarcane plantation

(2015) Toshiko Miura et al.   BIOLOGY AND FERTILITY OF SOILS

The Soil Microbiome Influences Grapevine-Associated Microbiota

(2015) Iratxe Zarraonaindia et al.   mBio

Comparison of soil microbial communities inhabiting vineyards and native sclerophyllous forests in central Chile

(2015) Luis E. Castañeda et al.   Ecology and Evolution

Pyrosequencing Reveals Changes in Soil Bacterial Communities after Conversion of Yungas Forests to Agriculture

(2015) Marcela S. Montecchia et al.   PLoS One

A fungal perspective on conservation biology

(2014) Jacob Heilmann-Clausen et al.   CONSERVATION BIOLOGY

Taxonomical and functional microbial community selection in soybean rhizosphere

(2014) Lucas W Mendes et al.   ISME Journal

Land use change alters functional gene diversity, composition and abundance in Amazon forest soil microbial communities

(2014) Fabiana S. Paula et al.   MOLECULAR ECOLOGY

Bioinformatic Approaches Reveal Metagenomic Characterization of Soil Microbial Community

(2014) Zhuofei Xu et al.   PLoS One

Soil Bacterial Community Response to Differences in Agricultural Management along with Seasonal Changes in a Mediterranean Region

(2014) Annamaria Bevivino et al.   PLoS One

Shotgun metagenomic analysis of metabolic diversity and microbial community structure in experimental vernal pools subjected to nitrate pulse

(2013) Sarah R Carrino-Kyker et al.   BMC MICROBIOLOGY

Microbial community structure in vineyard soils across altitudinal gradients and in different seasons

(2013) Paola E. Corneo et al.   FEMS MICROBIOLOGY ECOLOGY

Functional Assays and Metagenomic Analyses Reveals Differences between the Microbial Communities Inhabiting the Soil Horizons of a Norway Spruce Plantation

(2013) Stéphane Uroz et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Changes in Soil Microbial Community Structure Influenced by Agricultural Management Practices in a Mediterranean Agro-Ecosystem

(2013) Fuensanta García-Orenes et al.   PLoS One

Microbial terroir for wine grapes

(2013) J. A. Gilbert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Climate change, wine, and conservation

(2013) L. Hannah et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Vinecology: pairing wine with nature

(2013) Joshua H. Viers et al.   Conservation Letters

Structure, fluctuation and magnitude of a natural grassland soil metagenome

(2012) Tom O Delmont et al.   ISME Journal

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

(2012) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenomic Analysis of a Southern Maritime Antarctic Soil

(2012) David A. Pearce et al.   Frontiers in Microbiology

Organic viticulture and soil quality: A long-term study in Southern France

(2011) Patrice Coll et al.   APPLIED SOIL ECOLOGY

Hyphal morphogenesis: an evolutionary perspective

(2011) Steven D. Harris   Fungal Biology

Screening of rhizosphere bacteria from grapevine for their suppressive effect on Xiphinema index Thorne & Allen on in vitro grape plants

(2011) Erwin Aballay et al.   PLANT AND SOIL

Identifying biologically relevant differences between metagenomic communities

(2010) Donovan H. Parks et al.   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Soil biodiversity monitoring in Europe: ongoing activities and challenges

(2009) C. Gardi et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Abundance, composition, diversity and novelty of soil Proteobacteria

(2009) Anne M Spain et al.   ISME Journal

Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples

(2009) James Robert White et al.   PLoS Computational Biology

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Threats and biodiversity in the mediterranean biome

(2008) Emma C. Underwood et al.   DIVERSITY AND DISTRIBUTIONS

Relative impacts of land-use, management intensity and fertilization upon soil microbial community structure in agricultural systems

(2008) Kamlesh Jangid et al.   SOIL BIOLOGY & BIOCHEMISTRY

Land use influences soil fungal community composition across central Victoria, south-eastern Australia

(2008) Sabine Kasel et al.   SOIL BIOLOGY & BIOCHEMISTRY

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY