Bark and Grape Microbiome of Vitis vinifera: Influence of Geographic Patterns and Agronomic Management on Bacterial Diversity

Vineyard microbiome variations during different fertilisation practices revealed by 16s rRNA gene sequencing

(2018) Loredana Canfora et al.   APPLIED SOIL ECOLOGY

Effects of different management regimes on microbial biodiversity in vineyard soils

(2018) Maximilian Hendgen et al.   Scientific Reports

Vineyard under-vine floor management alters soil microbial composition, while the fruit microbiome shows no corresponding shifts

(2018) Ming-Yi Chou et al.   Scientific Reports

Metagenomic Approaches to Investigate the Contribution of the Vineyard Environment to the Quality of Wine Fermentation: Potentials and Difficulties

(2018) Irene Stefanini et al.   Frontiers in Microbiology

Geographical and Cultivar Features Differentiate Grape Microbiota in Northern Italy and Spain Vineyards

(2018) Valerio Mezzasalma et al.   Frontiers in Microbiology

Grapevine rootstocks shape underground bacterial microbiome and networking but not potential functionality

(2018) Ramona Marasco et al.   Microbiome

Temperature drives the assembly of endophytic communities' seasonal succession

(2017) Andrea Campisano et al.   ENVIRONMENTAL MICROBIOLOGY

From vineyard to winery: a source map of microbial diversity driving wine fermentation

(2017) Peter Morrison-Whittle et al.   ENVIRONMENTAL MICROBIOLOGY

Epiphytic fungal community in Vitis vinifera of the Portuguese wine regions

(2017) M. Oliveira et al.   LETTERS IN APPLIED MICROBIOLOGY

Grape microbiome as a reliable and persistent signature of field origin and environmental conditions in Cannonau wine production

(2017) Valerio Mezzasalma et al.   PLoS One

Is microbial terroir related to geographic distance between vineyards?

(2017) Toshiko Miura et al.   Environmental Microbiology Reports

mixOmics: An R package for ‘omics feature selection and multiple data integration

(2017) Florian Rohart et al.   PLoS Computational Biology

The Rhizosphere Bacterial Microbiota of Vitis vinifera cv. Pinot Noir in an Integrated Pest Management Vineyard

(2017) Giorgia Novello et al.   Frontiers in Microbiology

From Vineyard Soil to Wine Fermentation: Microbiome Approximations to Explain the “terroir” Concept

(2017) Ignacio Belda et al.   Frontiers in Microbiology

The Grapevine and Wine Microbiome: Insights from High-Throughput Amplicon Sequencing

(2017) Horatio H. Morgan et al.   Frontiers in Microbiology

Compositional analysis: a valid approach to analyze microbiome high-throughput sequencing data

(2016) Gregory B. Gloor et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Bacterial diversity of Grenache and Carignan grape surface from different vineyards at Priorat wine region (Catalonia, Spain)

(2016) Maria del Carmen Portillo et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Vineyard soil bacterial diversity and composition revealed by 16S rRNA genes: Differentiation by vineyard management

(2016) Kayla N. Burns et al.   SOIL BIOLOGY & BIOCHEMISTRY

Evaluation of microbial population dynamics in the co-composting of cow manure and rice straw using high throughput sequencing analysis

(2016) Guangming Ren et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Associations among Wine Grape Microbiome, Metabolome, and Fermentation Behavior Suggest Microbial Contribution to Regional Wine Characteristics

(2016) Nicholas A. Bokulich et al.   mBio

Whole-Metagenome-Sequencing-Based Community Profiles of Vitis vinifera L. cv. Corvina Berries Withered in Two Post-harvest Conditions

(2016) Elisa Salvetti et al.   Frontiers in Microbiology

Dynamic changes in microbiota and mycobiota during spontaneous ‘Vino Santo Trentino’ fermentation

(2016) Irene Stefanini et al.   Microbial Biotechnology

Wine microbiology is driven by vineyard and winery anthropogenic factors

(2016) Cédric Grangeteau et al.   Microbial Biotechnology

Complexity and Dynamics of the Winemaking Bacterial Communities in Berries, Musts, and Wines from Apulian Grape Cultivars through Time and Space

(2016) Marinella Marzano et al.   PLoS One

Comparison of bacterial succession in green waste composts amended with inorganic fertiliser and wastewater treatment plant sludge

(2015) Sean Storey et al.   BIORESOURCE TECHNOLOGY

Wine microbiome: A dynamic world of microbial interactions

(2015) Youzhong Liu et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

The Soil Microbiome Influences Grapevine-Associated Microbiota

(2015) Iratxe Zarraonaindia et al.   mBio

Regional microbial signatures positively correlate with differential wine phenotypes: evidence for a microbial aspect to terroir

(2015) Sarah Knight et al.   Scientific Reports

Wine fermentation microbiome: a landscape from different Portuguese wine appellations

(2015) Cátia Pinto et al.   Frontiers in Microbiology

Pyrosequencing reveals regional differences in fruit-associated fungal communities

(2014) Michael W. Taylor et al.   ENVIRONMENTAL MICROBIOLOGY

Influence of the farming system on the epiphytic yeasts and yeast-like fungi colonizing grape berries during the ripening process

(2014) Guilherme Martins et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Estimating coverage in metagenomic data sets and why it matters

(2014) Luis M Rodriguez-R et al.   ISME Journal

Development of a Prokaryotic Universal Primer for Simultaneous Analysis of Bacteria and Archaea Using Next-Generation Sequencing

(2014) Shunsuke Takahashi et al.   PLoS One

Bacterial Endophytic Communities in the Grapevine Depend on Pest Management

(2014) Andrea Campisano et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

ANOVA-Like Differential Expression (ALDEx) Analysis for Mixed Population RNA-Seq

(2013) Andrew D. Fernandes et al.   PLoS One

Characterization of Epiphytic Bacterial Communities from Grapes, Leaves, Bark and Soil of Grapevine Plants Grown, and Their Relations

(2013) Guilherme Martins et al.   PLoS One

Microbial terroir for wine grapes

(2013) J. A. Gilbert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PNAS Plus: From the Cover: Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate

(2013) N. A. Bokulich et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Grape berry bacterial microbiota: Impact of the ripening process and the farming system

(2012) Guilherme Martins et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

The Vineyard Yeast Microbiome, a Mixed Model Microbial Map

(2012) Mathabatha Evodia Setati et al.   PLoS One

The microbial ecology of wine grape berries

(2011) A. Barata et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Hydrotalea flava gen. nov., sp. nov., a new member of the phylum Bacteroidetes and allocation of the genera Chitinophaga, Sediminibacterium, Lacibacter, Flavihumibacter, Flavisolibacter, Niabella, Niastella, Segetibacter, Parasegetibacter, Terrimonas, Ferruginibacter, Filimonas and Hydrotalea to the family Chitinophagaceae fam. nov.

(2010) P. Kampfer et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One