Metabolomics Intervention Towards Better Understanding of Plant Traits

Genome‐scale metabolic reconstruction and in silico analysis of the rice leaf blight pathogen, Xanthomonas oryzae

(2020) Lokanand Koduru et al.   MOLECULAR PLANT PATHOLOGY

Metabolomic analysis and metabolite‐agronomic trait associations using kernels of wheat ( Triticum aestivum ) recombinant inbred lines

(2020) Taotao Shi et al.   PLANT JOURNAL

Molecular Basis of Root Nodule Symbiosis between Bradyrhizobium and ‘Crack-Entry’ Legume Groundnut (Arachis hypogaea L.)

(2020) Vinay Sharma et al.   Plants-Basel

Growth inhibition and metabolomic analysis of Xanthomonas oryzae pv. oryzae treated with resveratrol

(2020) Huai-Zhi Luo et al.   BMC MICROBIOLOGY

Development of zeaxanthin‐rich tomato fruit through genetic manipulations of carotenoid biosynthesis

(2020) Uri Karniel et al.   PLANT BIOTECHNOLOGY JOURNAL

Genetically modified crops: current status and future prospects

(2020) Krishan Kumar et al.   PLANTA

Metabolomics Response for Drought Stress Tolerance in Chinese Wheat Genotypes (Triticum aestivum)

(2020) Xiaoyang Guo et al.   Plants-Basel

Identification of a Unique Type of Isoflavone O-methyltransferase, GmIOMT1, based on Multi-omics Analysis of Soybean under Biotic Stress

(2020) Kai Uchida et al.   PLANT AND CELL PHYSIOLOGY

CRISPR-Mediated Engineering across the Central Dogma in Plant Biology for Basic Research and Crop Improvement

(2020) Dibyajyoti Pramanik et al.   Molecular Plant

Metabolomic Profiling of Drought-Tolerant and Susceptible Peanut (Arachis hypogaea L.) Genotypes in Response to Drought Stress

(2020) Srutiben A. Gundaraniya et al.   ACS Omega

SlMYB75, an MYB-type transcription factor, promotes anthocyanin accumulation and enhances volatile aroma production in tomato fruits

(2019) Wei Jian et al.   Horticulture Research

CRISPR/Cas9-mediated targeted mutagenesis of GmSPL9 genes alters plant architecture in soybean

(2019) Aili Bao et al.   BMC PLANT BIOLOGY

Advances in genomic, transcriptomic, proteomic, and metabolomic approaches to study biotic stress in fruit crops

(2019) Tong Li et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

Enzymatic biosynthesis and immobilization of polyprotein verified at the single-molecule level

(2019) Yibing Deng et al.   Nature Communications

Dryas as a Model for Studying the Root Symbioses of the Rosaceae

(2019) Benjamin Billault-Penneteau et al.   Frontiers in Plant Science

Genetic strategies for improving crop yields

(2019) Julia Bailey-Serres et al.   NATURE

Multiplex CRISPR/Cas9‐mediated metabolic engineering increases soya bean isoflavone content and resistance to soya bean mosaic virus

(2019) Peipei Zhang et al.   PLANT BIOTECHNOLOGY JOURNAL

Applications of metabolomics in the research of soybean plant under abiotic stress

(2019) Zhe Feng et al.   FOOD CHEMISTRY

NAC-NOR mutations in tomato Penjar accessions attenuate multiple metabolic processes and prolong the fruit shelf life

(2018) Rakesh Kumar et al.   FOOD CHEMISTRY

Identification of genomic ATP binding cassette (ABC) transporter genes and Cd-responsive ABCs in Brassica napus

(2018) Xian Duo Zhang et al.   GENE

Functional characterization of calcium-dependent protein kinase (CPK) 2 gene from oilseed rape ( Brassica napus L.) in regulating reactive oxygen species signaling and cell death control

(2018) Weihuan Wang et al.   GENE

Metabolomics activity screening for identifying metabolites that modulate phenotype

(2018) Carlos Guijas et al.   NATURE BIOTECHNOLOGY

Genome-wide analysis and expression profiling of the HMA gene family in Brassica napus under cd stress

(2018) Nannan Li et al.   PLANT AND SOIL

Overexpressing the H-protein of the glycine cleavage system increases biomass yield in glasshouse and field grown transgenic tobacco plants

(2018) Patricia E. Lopez-Calcagno et al.   PLANT BIOTECHNOLOGY JOURNAL

Mutations in a subfamily of abscisic acid receptor genes promote rice growth and productivity

(2018) Chunbo Miao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative genomics of the nonlegumeParasponiareveals insights into evolution of nitrogen-fixing rhizobium symbioses

(2018) Robin van Velzen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis

(2018) Maximilian Griesmann et al.   SCIENCE

Photosystem II Subunit S overexpression increases the efficiency of water use in a field-grown crop

(2018) Katarzyna Głowacka et al.   Nature Communications

Lycopene Is Enriched in Tomato Fruit by CRISPR/Cas9-Mediated Multiplex Genome Editing

(2018) Xindi Li et al.   Frontiers in Plant Science

Introgression of UfCyt c6, a thylakoid lumen protein from a green seaweed Ulva fasciata Delile enhanced photosynthesis and growth in tobacco

(2018) Sweta K. Yadav et al.   MOLECULAR BIOLOGY REPORTS

A single transcription factor promotes both yield and immunity in rice

(2018) Jing Wang et al.   SCIENCE

Nitrogen Fixation in Cereals

(2018) Mónica Rosenblueth et al.   Frontiers in Microbiology

A Resurrected Scenario: Single Gain and Massive Loss of Nitrogen-Fixing Nodulation

(2018) Robin van Velzen et al.   TRENDS IN PLANT SCIENCE

Natural variation in folate levels among tomato ( Solanum lycopersicum ) accessions

(2017) Pallawi Upadhyaya et al.   FOOD CHEMISTRY

Reduced Drought Tolerance by CRISPR/Cas9-Mediated SlMAPK3 Mutagenesis in Tomato Plants

(2017) Liu Wang et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Functional characterization of BnHSFA4a as a heat shock transcription factor in controlling the re-establishment of desiccation tolerance in seeds

(2017) Sirui Lang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Metabolite profiling of barley flag leaves under drought and combined heat and drought stress reveals metabolic QTLs for metabolites associated with antioxidant defense

(2017) Sven Eduard Templer et al.   JOURNAL OF EXPERIMENTAL BOTANY

Metabolomic analysis of tomato seed germination

(2017) Rashid H. Kazmi et al.   Metabolomics

mlo-Based Resistance: An Apparently Universal “Weapon” to Defeat Powdery Mildew Disease

(2017) Stefan Kusch et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

uORF-mediated translation allows engineered plant disease resistance without fitness costs

(2017) Guoyong Xu et al.   NATURE

Increased SBPase activity improves photosynthesis and grain yield in wheat grown in greenhouse conditions

(2017) Steven M. Driever et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The wheat Lr34 multipathogen resistance gene confers resistance to anthracnose and rust in sorghum

(2017) Wendelin Schnippenkoetter et al.   PLANT BIOTECHNOLOGY JOURNAL

Canalization of Tomato Fruit Metabolism

(2017) Saleh Alseekh et al.   PLANT CELL

Knockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition

(2017) Rohit Joshi et al.   PLANT CELL AND ENVIRONMENT

Drought-related secondary metabolites of barley (Hordeum vulgareL.) leaves and their metabolomic quantitative trait loci

(2017) Anna Piasecka et al.   PLANT JOURNAL

Advances in detection of stress tolerance in plants through metabolomics approaches

(2017) Naeem Khan et al.   Plant Omics

Overexpression of the RieskeFeS Protein Increases Electron Transport Rates and Biomass Yield

(2017) Andrew J. Simkin et al.   PLANT PHYSIOLOGY

T-protein is present in large excess over the other proteins of the glycine cleavage system in leaves of Arabidopsis

(2017) Stefan Timm et al.   PLANTA

BRASSINOSTEROID INSENSITIVE2 negatively regulates cellulose synthesis inArabidopsisby phosphorylating cellulose synthase 1

(2017) Clara Sánchez-Rodríguez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differentially evolved glucosyltransferases determine natural variation of rice flavone accumulation and UV-tolerance

(2017) Meng Peng et al.   Nature Communications

Lutein and Zeaxanthin—Food Sources, Bioavailability and Dietary Variety in Age‐Related Macular Degeneration Protection

(2017) Bronwyn Eisenhauer et al.   Nutrients

OsSAPK2 Confers Abscisic Acid Sensitivity and Tolerance to Drought Stress in Rice

(2017) Dengji Lou et al.   Frontiers in Plant Science

Enhanced Bacterial Wilt Resistance in Potato Through Expression of Arabidopsis EFR and Introgression of Quantitative Resistance from Solanum commersonii

(2017) Federico Boschi et al.   Frontiers in Plant Science

Metabolomics for Plant Improvement: Status and Prospects

(2017) Rakesh Kumar et al.   Frontiers in Plant Science

A Review of Recent Advancement in Integrating Omics Data with Literature Mining towards Biomedical Discoveries

(2017) Kalpana Raja et al.   International Journal of Genomics

Global causes of blindness and distance vision impairment 1990–2020: a systematic review and meta-analysis

(2017) Seth R Flaxman et al.   Lancet Global Health

Symbiotic Nitrogen Fixation and the Challenges to Its Extension to Nonlegumes

(2016) Florence Mus et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Using lipidomics for expanding the knowledge on lipid metabolism in plants

(2016) Hezi Tenenboim et al.   BIOCHIMIE

Genome–metabolite associations revealed low heritability, high genetic complexity, and causal relations for leaf metabolites in winter wheat (Triticum aestivum)

(2016) Andrea Matros et al.   JOURNAL OF EXPERIMENTAL BOTANY

Increased abscisic acid levels in transgenic maize overexpressingAtLOS5mediated root ion fluxes and leaf water status under salt stress

(2016) Juan Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Integrated analysis of metabolites and proteins reveal aspects of the tissue-specific function of synthetic cytokinin in kiwifruit development and ripening

(2016) Aggeliki Ainalidou et al.   Journal of Proteomics

Fortune telling: metabolic markers of plant performance

(2016) Olivier Fernandez et al.   Metabolomics

Evolutionary Metabolomics Reveals Domestication-Associated Changes in Tetraploid Wheat Kernels

(2016) Romina Beleggia et al.   MOLECULAR BIOLOGY AND EVOLUTION

AtMYB12 regulates flavonoids accumulation and abiotic stress tolerance in transgenic Arabidopsis thaliana

(2016) Feibing Wang et al.   MOLECULAR GENETICS AND GENOMICS

Transgenic barley overexpressing a cytokinin dehydrogenase gene shows greater tolerance to drought stress

(2016) Hana Pospíšilová et al.   New Biotechnology

Evaluation of the Role of the LysM Receptor-Like Kinase, OsNFR5/OsRLK2 for AM Symbiosis in Rice

(2016) Kana Miyata et al.   PLANT AND CELL PHYSIOLOGY

ARGOS8 variants generated by CRISPR-Cas9 improve maize grain yield under field drought stress conditions

(2016) Jinrui Shi et al.   PLANT BIOTECHNOLOGY JOURNAL

Lipid signalling in plant responses to abiotic stress

(2016) Quancan Hou et al.   PLANT CELL AND ENVIRONMENT

Brassica napus Cycling Dof Factor1 (BnCDF1) is involved in flowering time and freezing tolerance

(2016) Jiying Xu et al.   PLANT GROWTH REGULATION

Genomics-based strategies for the use of natural variation in the improvement of crop metabolism

(2016) Federico Scossa et al.   PLANT SCIENCE

Elevated vitamin E content improves all-transβ-carotene accumulation and stability in biofortified sorghum

(2016) Ping Che et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improving photosynthesis and crop productivity by accelerating recovery from photoprotection

(2016) Johannes Kromdijk et al.   SCIENCE

Comparative and parallel genome-wide association studies for metabolic and agronomic traits in cereals

(2016) Wei Chen et al.   Nature Communications

Identification of Conserved and Diverse Metabolic Shifts during Rice Grain Development

(2016) Chaoyang Hu et al.   Scientific Reports

Genome-Wide Analysis and Expression Profiling of the SUC and SWEET Gene Families of Sucrose Transporters in Oilseed Rape (Brassica napus L.)

(2016) Hongju Jian et al.   Frontiers in Plant Science

Integrated metabolomics and phytochemical genomics approaches for studies on rice

(2016) Yozo Okazaki et al.   GigaScience

Mitogen-activated protein kinase kinase kinase (MAPKKK) 4 from rapeseed (Brassica napus L.) is a novel member inducing ROS accumulation and cell death

(2015) Liang Li et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Integrated metabolomics for abiotic stress responses in plants

(2015) Ryo Nakabayashi et al.   CURRENT OPINION IN PLANT BIOLOGY

Cloning of the Lycopene β-cyclase Gene in Nicotiana tabacum and Its Overexpression Confers Salt and Drought Tolerance

(2015) Yanmei Shi et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Metabolic Engineering of Wheat Provitamin A by Simultaneously Overexpressing CrtB and Silencing Carotenoid Hydroxylase (TaHYD)

(2015) Jian Zeng et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Phenotypic and metabolic responses to drought and salinity of four contrasting lentil accessions

(2015) A. Muscolo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Expression ofBrassica napus TTG2, a regulator of trichome development, increases plant sensitivity to salt stress by suppressing the expression of auxin biosynthesis genes

(2015) Qingyuan Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Multigene manipulation of photosynthetic carbon assimilation increases CO2 fixation and biomass yield in tobacco

(2015) Andrew J. Simkin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Mass spectrometry-based plant metabolomics: Metabolite responses to abiotic stress

(2015) Tiago F. Jorge et al.   MASS SPECTROMETRY REVIEWS

Using Metabolomic Approaches to Explore Chemical Diversity in Rice

(2015) Miyako Kusano et al.   Molecular Plant

Spatiotemporal Distribution of Phenolamides and the Genetics of Natural Variation of Hydroxycinnamoyl Spermidine in Rice

(2015) Xuekui Dong et al.   Molecular Plant

MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis

(2015) Hiroshi Tsugawa et al.   NATURE METHODS

Temperature determines size and direction of effects of elevated CO2and nitrogen form on yield quantity and quality of Chinese cabbage

(2015) M. Reich et al.   PLANT BIOLOGY

The Regulatory Status of Genome-edited Crops

(2015) Jeffrey D. Wolt et al.   PLANT BIOTECHNOLOGY JOURNAL

Mitochondrial Dihydrolipoyl Dehydrogenase Activity Shapes Photosynthesis and Photorespiration ofArabidopsis thaliana

(2015) Stefan Timm et al.   PLANT CELL

Identification and Mode of Inheritance of Quantitative Trait Loci for Secondary Metabolite Abundance in Tomato

(2015) Saleh Alseekh et al.   PLANT CELL

Genetic Determinants of the Network of Primary Metabolism and Their Relationships to Plant Performance in a Maize Recombinant Inbred Line Population

(2015) Weiwei Wen et al.   PLANT CELL

The role of photorespiration during H2 photoproduction in Chlorella protothecoides under nitrogen limitation

(2015) Litao Zhang et al.   PLANT CELL REPORTS

A ‘golden’ SNP inCmOrgoverns the fruit flesh color of melon (Cucumis melo)

(2015) Galil Tzuri et al.   PLANT JOURNAL

Identification and characterization of plant-specific NAC gene family in canola (Brassica napus L.) reveal novel members involved in cell death

(2015) Boya Wang et al.   PLANT MOLECULAR BIOLOGY

Combining Quantitative Genetics Approaches with Regulatory Network Analysis to Dissect the Complex Metabolism of the Maize Kernel

(2015) Weiwei Wen et al.   PLANT PHYSIOLOGY

Overexpression of ARGOS Genes Modifies Plant Sensitivity to Ethylene, Leading to Improved Drought Tolerance in Both Arabidopsis and Maize

(2015) Jinrui Shi et al.   PLANT PHYSIOLOGY

Transgenic poplar expressing Arabidopsis YUCCA6 exhibits auxin-overproduction phenotypes and increased tolerance to abiotic stress

(2015) Qingbo Ke et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Down-regulation of BdBRI1, a putative brassinosteroid receptor gene produces a dwarf phenotype with enhanced drought tolerance in Brachypodium distachyon

(2015) Ying Feng et al.   PLANT SCIENCE

Detection of QTL for metabolic and agronomic traits in wheat with adjustments for variation at genetic loci that affect plant phenology

(2015) Camilla B. Hill et al.   PLANT SCIENCE

OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth

(2015) Harin Jung et al.   PLANT SCIENCE

Multi-level engineering facilitates the production of phenylpropanoid compounds in tomato

(2015) Yang Zhang et al.   Nature Communications

Unsaturation of Very-Long-Chain Ceramides Protects Plant from Hypoxia-Induced Damages by Modulating Ethylene Signaling in Arabidopsis

(2015) Li-Juan Xie et al.   PLoS Genetics

Understanding Water-Stress Responses in Soybean Using Hydroponics System—A Systems Biology Perspective

(2015) Prateek Tripathi et al.   Frontiers in Plant Science

A Sweetpotato Geranylgeranyl Pyrophosphate Synthase Gene, IbGGPS, Increases Carotenoid Content and Enhances Osmotic Stress Tolerance in Arabidopsis thaliana

(2015) Wei Chen et al.   PLoS One

Transgenic Rice Expressing Ictb and FBP/Sbpase Derived from Cyanobacteria Exhibits Enhanced Photosynthesis and Mesophyll Conductance to CO2

(2015) Han Yu Gong et al.   PLoS One

Isolation and characterization of BnMKK1 responsive to multiple stresses and affecting plant architecture in tobacco

(2014) Shunwu Yu et al.   ACTA PHYSIOLOGIAE PLANTARUM

Rising atmospheric CO2 may affect oil quality and seed yield of sunflower (Helianthus annus L.)

(2014) Madan Pal et al.   ACTA PHYSIOLOGIAE PLANTARUM

A Foundation for Provitamin A Biofortification of Maize: Genome-Wide Association and Genomic Prediction Models of Carotenoid Levels

(2014) Brenda F. Owens et al.   GENETICS

The Role of Symbiotic Nitrogen Fixation in Sustainable Production of Biofuels

(2014) Bandana Biswas et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Enrichment of provitamin A content in wheat (Triticum aestivum L.) by introduction of the bacterial carotenoid biosynthetic genes CrtB and CrtI

(2014) Cheng Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification and functional analysis of mitogen-activated protein kinase kinase kinase (MAPKKK) genes in canola (Brassica napus L.)

(2014) Yun Sun et al.   JOURNAL OF EXPERIMENTAL BOTANY

Gas chromatography mass spectrometry based metabolic profiling reveals biomarkers involved in rice-gall midge interactions

(2014) Ruchi Agarrwal et al.   Journal of Integrative Plant Biology

Comparative proteomic and metabolomic analyses reveal mechanisms of improved cold stress tolerance in bermudagrass (Cynodon dactylon(L.) Pers.) by exogenous calcium

(2014) Haitao Shi et al.   Journal of Integrative Plant Biology

Transgenic Brassica juncea Plants Expressing MsrA1, a Synthetic Cationic Antimicrobial Peptide, Exhibit Resistance to Fungal Phytopathogens

(2014) Anjana Rustagi et al.   MOLECULAR BIOTECHNOLOGY

Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism

(2014) Wei Chen et al.   NATURE GENETICS

The Bifunctional Plant Receptor, OsCERK1, Regulates Both Chitin-Triggered Immunity and Arbuscular Mycorrhizal Symbiosis in Rice

(2014) Kana Miyata et al.   PLANT AND CELL PHYSIOLOGY

Transgenic alteration of ethylene biosynthesis increases grain yield in maize under field drought-stress conditions

(2014) Jeffrey E. Habben et al.   PLANT BIOTECHNOLOGY JOURNAL

The Root Hair “Infectome” ofMedicago truncatulaUncovers Changes in Cell Cycle Genes and Reveals a Requirement for Auxin Signaling in Rhizobial Infection

(2014) Andrew Breakspear et al.   PLANT CELL

Overexpression of UDP-glucose pyrophosphorylase from Larix gmelinii enhances vegetative growth in transgenic Arabidopsis thaliana

(2014) Ningning Li et al.   PLANT CELL REPORTS

Overexpression of Folate Biosynthesis Genes in Rice (Oryza sativa L.) and Evaluation of Their Impact on Seed Folate Content

(2014) Wei Dong et al.   PLANT FOODS FOR HUMAN NUTRITION

An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser-capture microdissection coupled to RNA sequencing

(2014) Brice Roux et al.   PLANT JOURNAL

Metabolome-genome-wide association study dissects genetic architecture for generating natural variation in rice secondary metabolism

(2014) Fumio Matsuda et al.   PLANT JOURNAL

Genome-Wide Association in Tomato Reveals 44 Candidate Loci for Fruit Metabolic Traits

(2014) C. Sauvage et al.   PLANT PHYSIOLOGY

Challenges to develop nitrogen-fixing cereals by direct nif-gene transfer

(2014) Leonardo Curatti et al.   PLANT SCIENCE

Identification of Metabolic QTLs and Candidate Genes for Glucosinolate Synthesis in Brassica oleracea Leaves, Seeds and Flower Buds

(2014) Tamara Sotelo et al.   PLoS One

Cytosolic glutamine synthetase: a target for improvement of crop nitrogen use efficiency?

(2014) Hanne C. Thomsen et al.   TRENDS IN PLANT SCIENCE

Metabolome-based genome-wide association study of maize kernel leads to novel biochemical insights

(2014) Weiwei Wen et al.   Nature Communications

Metabolic variation between japonica and indica rice cultivars as revealed by non-targeted metabolomics

(2014) Chaoyang Hu et al.   Scientific Reports

Physiological analysis of nitrogen-efficient rice overexpressing alanine aminotransferase under different N regimes

(2013) Perrin H. Beatty et al.   Botany

Rapid Cycling Recurrent Selection for Increased Carotenoids Content in Cassava Roots

(2013) H. Ceballos et al.   CROP SCIENCE

Metabolomics as a Tool to Investigate Abiotic Stress Tolerance in Plants

(2013) Vicent Arbona et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Enhancement of oxidative and drought tolerance in Arabidopsis by overaccumulation of antioxidant flavonoids

(2013) Ryo Nakabayashi et al.   PLANT JOURNAL

Manipulation of microRNA expression to improve nitrogen use efficiency

(2013) Jeffrey J. Fischer et al.   PLANT SCIENCE

Cell- and Tissue-Specific Transcriptome Analyses of Medicago truncatula Root Nodules

(2013) Erik Limpens et al.   PLoS One

Comparison of the Nodule vs. Root Transcriptome of the Actinorhizal Plant Datisca glomerata: Actinorhizal Nodules Contain a Specific Class of Defensins

(2013) Irina V. Demina et al.   PLoS One

Genetic analysis of the metabolome exemplified using a rice population

(2013) L. Gong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Post-embryonic root organogenesis in cereals: branching out from model plants

(2013) Beata Orman-Ligeza et al.   TRENDS IN PLANT SCIENCE

Genome-Wide Association Study and Pathway-Level Analysis of Tocochromanol Levels in Maize Grain

(2013) Alexander E. Lipka et al.   G3-Genes Genomes Genetics

Retention during Processing and Bioaccessibility of β-Carotene in High β-Carotene Transgenic Cassava Root

(2012) Mark L. Failla et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Introduction of β-Carotene–Rich Orange Sweet Potato in Rural Uganda Resulted in Increased Vitamin A Intakes among Children and Women and Improved Vitamin A Status among Children

(2012) Christine Hotz et al.   JOURNAL OF NUTRITION

Overexpression of Arabidopsis YUCCA6 in Potato Results in High-Auxin Developmental Phenotypes and Enhanced Resistance to Water Deficit

(2012) Jeong Im Kim et al.   Molecular Plant

Tissue-Specific Transcriptome Analysis in Nodules of Lotus japonicus

(2012) Kojiro Takanashi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

High-efficiency TALEN-based gene editing produces disease-resistant rice

(2012) Ting Li et al.   NATURE BIOTECHNOLOGY

Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels

(2012) Hui Li et al.   NATURE GENETICS

Addition of transcription activator-like effector binding sites to a pathogen strain-specific rice bacterial blight resistance gene makes it effective against additional strains and against bacterial leaf streak

(2012) Aaron W. Hummel et al.   NEW PHYTOLOGIST

Overexpression of a Wheat Aquaporin Gene, TaAQP8, Enhances Salt Stress Tolerance in Transgenic Tobacco

(2012) Wei Hu et al.   PLANT AND CELL PHYSIOLOGY

Engineering nitrogen use efficient crop plants: the current status

(2012) Chandra H. McAllister et al.   PLANT BIOTECHNOLOGY JOURNAL

Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis

(2012) Fumio Matsuda et al.   PLANT JOURNAL

RhNAC2 and RhEXPA4 Are Involved in the Regulation of Dehydration Tolerance during the Expansion of Rose Petals

(2012) F. Dai et al.   PLANT PHYSIOLOGY

Effect of the Citrus Lycopene β-Cyclase Transgene on Carotenoid Metabolism in Transgenic Tomato Fruits

(2012) Fei Guo et al.   PLoS One

Integrated Metabolo-Proteomic Approach to Decipher the Mechanisms by Which Wheat QTL (Fhb1) Contributes to Resistance against Fusarium graminearum

(2012) Raghavendra Gunnaiah et al.   PLoS One

Transgenic Resistance Confers Effective Field Level Control of Bacterial Spot Disease in Tomato

(2012) Diana M. Horvath et al.   PLoS One

Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize

(2012) C. Riedelsheimer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cytokinins: metabolism and function in plant adaptation to environmental stresses

(2012) Sukbong Ha et al.   TRENDS IN PLANT SCIENCE

Effects of Irrigation Water Quality and Drip Tape Arrangement on Soil Salinity, Soil Moisture Distribution, and Cotton Yield ( Gossypium hirsutum L.) Under Mulched Drip Irrigation in Xinjiang, China

(2012) Mei-xian LIU et al.   Journal of Integrative Agriculture

Metabolic Profiling of a Mapping Population Exposes New Insights in the Regulation of Seed Metabolism and Seed, Fruit, and Plant Relations

(2012) David Toubiana et al.   PLoS Genetics

The BioCassava Plus Program: Biofortification of Cassava for Sub-Saharan Africa

(2011) Richard Sayre et al.   Annual Review of Plant Biology

Construction of a potato consensus map and QTL meta-analysis offer new insights into the genetic architecture of late blight resistance and plant maturity traits

(2011) Sarah Danan et al.   BMC PLANT BIOLOGY

Root Nodulation: A Paradigm for How Plant-Microbe Symbiosis Influences Host Developmental Pathways

(2011) Guilhem J. Desbrosses et al.   Cell Host & Microbe

Expression of a radish defensin in transgenic wheat confers increased resistance to Fusarium graminearum and Rhizoctonia cerealis

(2011) Zhao Li et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Genome-wide association study of leaf architecture in the maize nested association mapping population

(2011) Feng Tian et al.   NATURE GENETICS

Characterization of metabolite quantitative trait loci and metabolic networks that control glucosinolate concentration in the seeds and leaves of Brassica napus

(2011) Ji Feng et al.   NEW PHYTOLOGIST

Down-regulation of β-carotene hydroxylase increases β-carotene and total carotenoids enhancing salt stress tolerance in transgenic cultured cells of sweetpotato

(2011) Sun Ha Kim et al.   PHYTOCHEMISTRY

Regulated Expression of an Isopentenyltransferase Gene (IPT) in Peanut Significantly Improves Drought Tolerance and Increases Yield Under Field Conditions

(2011) H. Qin et al.   PLANT AND CELL PHYSIOLOGY

Transformation of β-Lycopene Cyclase Genes from Salicornia europaea and Arabidopsis Conferred Salt Tolerance in Arabidopsis and Tobacco

(2011) Xianyang Chen et al.   PLANT AND CELL PHYSIOLOGY

Cytokinin-mediated source/sink modifications improve drought tolerance and increase grain yield in rice under water-stress

(2011) Zvi Peleg et al.   PLANT BIOTECHNOLOGY JOURNAL

Analysis of short-term changes in the Arabidopsis thaliana glycerolipidome in response to temperature and light

(2011) Asdrubal Burgos et al.   PLANT JOURNAL

A soybean β-expansin gene GmEXPB2 intrinsically involved in root system architecture responses to abiotic stresses

(2011) Wenbing Guo et al.   PLANT JOURNAL

Constitutive Overexpression of the OsNAS Gene Family Reveals Single-Gene Strategies for Effective Iron- and Zinc-Biofortification of Rice Endosperm

(2011) Alexander A. T. Johnson et al.   PLoS One

Future Prospects for Cereals That Fix Nitrogen

(2011) P. H. Beatty et al.   SCIENCE

Root-synthesized cytokinins improve shoot growth and fruit yield in salinized tomato (Solanum lycopersicum L.) plants

(2010) Michel Edmond Ghanem et al.   JOURNAL OF EXPERIMENTAL BOTANY

Evaluation and selection of tomato accessions (Solanum section Lycopersicon) for content of lycopene, β-carotene and ascorbic acid

(2010) Ana María Adalid et al.   JOURNAL OF FOOD COMPOSITION AND ANALYSIS

Metabolomic and transcriptomic analysis of the rice response to the bacterial blight pathogen Xanthomonas oryzae pv. oryzae

(2010) Theodore R. Sana et al.   Metabolomics

Provitamin A Accumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase Gene

(2010) Ralf Welsch et al.   PLANT CELL

Root-Specific Reduction of Cytokinin Causes Enhanced Root Growth, Drought Tolerance, and Leaf Mineral Enrichment inArabidopsisand Tobacco

(2010) Tomáš Werner et al.   PLANT CELL

Hybrid embryos of Vicia faba develop enhanced sink strength, which is established during early development

(2010) Tobias Meitzel et al.   PLANT JOURNAL

Coordinated Activation of Cellulose and Repression of Lignin Biosynthesis Pathways in Rice

(2010) M. M. R. Ambavaram et al.   PLANT PHYSIOLOGY

Expression of ethylene response factor JERF1 in rice improves tolerance to drought

(2010) Zhijin Zhang et al.   PLANTA

Differentiation of Symbiotic Cells and Endosymbionts in Medicago truncatula Nodulation Are Coupled to Two Transcriptome-Switches

(2010) Nicolas Maunoury et al.   PLoS One

Expression ofphytoene synthase1and Carotene DesaturasecrtIGenes Result in an Increase in the Total Carotenoids Content in Transgenic Elite Wheat (Triticum aestivumL.)

(2009) Ling Cong et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

TaSnRK2.4, an SNF1-type serine/threonine protein kinase of wheat (Triticum aestivum L.), confers enhanced multistress tolerance in Arabidopsis

(2009) Xinguo Mao et al.   JOURNAL OF EXPERIMENTAL BOTANY

Fruit cuticle lipid composition during development in tomato ripening mutants

(2009) Dylan K. Kosma et al.   PHYSIOLOGIA PLANTARUM

Effects of elevated CO2on grain yield and quality of wheat: results from a 3-year free-air CO2enrichment experiment

(2009) P. Högy et al.   PLANT BIOLOGY

Transcriptome analysis of nitrogen-efficient rice over-expressing alanine aminotransferase

(2009) Perrin H. Beatty et al.   PLANT BIOTECHNOLOGY JOURNAL

Enhancement of Carotenoid Biosynthesis in Transplastomic Tomatoes by Induced Lycopene-to-Provitamin A Conversion

(2009) W. Apel et al.   PLANT PHYSIOLOGY

Transgenic multivitamin corn through biofortification of endosperm with three vitamins representing three distinct metabolic pathways

(2009) S. Naqvi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Folate biofortification of lettuce by expression of a codon optimized chicken GTP cyclohydrolase I gene

(2009) Aline C. S. Nunes et al.   TRANSGENIC RESEARCH

Overexpression of the Barley Nicotianamine Synthase Gene HvNAS1 Increases Iron and Zinc Concentrations in Rice Grains

(2009) Hiroshi Masuda et al.   Rice

Biosynthesis of the Iron-Molybdenum Cofactor of Nitrogenase

(2008) Luis M. Rubio et al.   Annual Review of Microbiology

Gibberellin Metabolism and its Regulation

(2008) Shinjiro Yamaguchi   Annual Review of Plant Biology

Effect of the cauliflower Or transgene on carotenoid accumulation and chromoplast formation in transgenic potato tubers

(2008) A. B. Lopez et al.   JOURNAL OF EXPERIMENTAL BOTANY

Generation of transgenic maize with enhanced provitamin A content

(2008) Maneesha Aluru et al.   JOURNAL OF EXPERIMENTAL BOTANY

A Genome-Wide Meta-Analysis of Rice Blast Resistance Genes and Quantitative Trait Loci Provides New Insights into Partial and Complete Resistance

(2008) Elsa Ballini et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Enrichment of tomato fruit with health-promoting anthocyanins by expression of select transcription factors

(2008) Eugenio Butelli et al.   NATURE BIOTECHNOLOGY

Genetic engineering of improved nitrogen use efficiency in rice by the tissue-specific expression ofalanine aminotransferase

(2008) Ashok K. Shrawat et al.   PLANT BIOTECHNOLOGY JOURNAL

Reprogramming a maize plant: transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis

(2008) Gunther Doehlemann et al.   PLANT JOURNAL

Overexpression of the lemon basil α-zingiberene synthase gene increases both mono- and sesquiterpene contents in tomato fruit

(2008) Rachel Davidovich-Rikanati et al.   PLANT JOURNAL

Suppression of 4-Coumarate-CoA Ligase in the Coniferous Gymnosperm Pinus radiata

(2008) A. Wagner et al.   PLANT PHYSIOLOGY

Expressing a gene encoding wheat oxalate oxidase enhances resistance to Sclerotinia sclerotiorum in oilseed rape (Brassica napus)

(2008) Xiangbai Dong et al.   PLANTA

Combinatorial genetic transformation generates a library of metabolic phenotypes for the carotenoid pathway in maize

(2008) C. Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolomics-assisted breeding: a viable option for crop improvement?

(2008) Alisdair R. Fernie et al.   TRENDS IN GENETICS