Comparative genomics of the nonlegumeParasponiareveals insights into evolution of nitrogen-fixing rhizobium symbioses
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Comparative genomics of the nonlegumeParasponiareveals insights into evolution of nitrogen-fixing rhizobium symbioses
Authors
Keywords
-
Journal
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 115, Issue 20, Pages E4700-E4709
Publisher
Proceedings of the National Academy of Sciences
Online
2018-05-11
DOI
10.1073/pnas.1721395115
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Ancestral alliances: Plant mutualistic symbioses with fungi and bacteria
- (2017) Francis M. Martin et al. SCIENCE
- Differential regulation of the Epr3 receptor coordinates membrane-restricted rhizobial colonization of root nodule primordia
- (2017) Yasuyuki Kawaharada et al. Nature Communications
- Chasing unicorns: Nodulation origins and the paradox of novelty
- (2016) Jeff J. Doyle AMERICAN JOURNAL OF BOTANY
- An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH
- (2016) Thanh Van Nguyen et al. BMC GENOMICS
- Multiple mutualist effects on genomewide expression in the tripartite association betweenMedicago truncatula,nitrogen-fixing bacteria and mycorrhizal fungi
- (2016) Michelle E. Afkhami et al. MOLECULAR ECOLOGY
- Biology and evolution of arbuscular mycorrhizal symbiosis in the light of genomics
- (2016) Laurent Kamel et al. NEW PHYTOLOGIST
- The nitrogen fix
- (2016) E. Stokstad SCIENCE
- What Does It Take to Evolve A Nitrogen-Fixing Endosymbiosis?
- (2016) Rene Geurts et al. TRENDS IN PLANT SCIENCE
- The Jujube Genome Provides Insights into Genome Evolution and the Domestication of Sweetness/Acidity Taste in Fruit Trees
- (2016) Jian Huang et al. PLoS Genetics
- BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS: Table 1.
- (2015) Katharina J. Hoff et al. BIOINFORMATICS
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Receptor-mediated exopolysaccharide perception controls bacterial infection
- (2015) Y. Kawaharada et al. NATURE
- HISAT: a fast spliced aligner with low memory requirements
- (2015) Daehwan Kim et al. NATURE METHODS
- Bacterial-induced calcium oscillations are common to nitrogen-fixing associations of nodulating legumes and non-legumes
- (2015) Emma Granqvist et al. NEW PHYTOLOGIST
- TheCasuarina NINgene is transcriptionally activated throughoutFrankiaroot infection as well as in response to bacterial diffusible signals
- (2015) Fernando Clavijo et al. NEW PHYTOLOGIST
- The NIN Transcription Factor Coordinates Diverse Nodulation Programs in Different Tissues of the Medicago truncatula Root
- (2015) Tatiana Vernié et al. PLANT CELL
- A phylogenetically conserved group of NF-Y transcription factors interact to control nodulation in legumes
- (2015) Maël Baudin et al. PLANT PHYSIOLOGY
- Algal ancestor of land plants was preadapted for symbiosis
- (2015) Pierre-Marc Delaux et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Large-scale phylogenetic analyses reveal multiple gains of actinorhizal nitrogen-fixing symbioses in angiosperms associated with climate change
- (2015) Hong-Lei Li et al. Scientific Reports
- Repbase Update, a database of repetitive elements in eukaryotic genomes
- (2015) Weidong Bao et al. Mobile DNA
- Synthetic biology approaches to engineering the nitrogen symbiosis in cereals
- (2014) C. Rogers et al. JOURNAL OF EXPERIMENTAL BOTANY
- The genome of Eucalyptus grandis
- (2014) Alexander A. Myburg et al. NATURE
- Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm
- (2014) Alexandre Lomsadze et al. NUCLEIC ACIDS RESEARCH
- UniProt: a hub for protein information
- (2014) NUCLEIC ACIDS RESEARCH
- The Draft Genome of Hop (Humulus lupulus), an Essence for Brewing
- (2014) S. Natsume et al. PLANT AND CELL PHYSIOLOGY
- An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser-capture microdissection coupled to RNA sequencing
- (2014) Brice Roux et al. PLANT JOURNAL
- Lignin Modification Leads to Increased Nodule Numbers in Alfalfa
- (2014) L. Gallego-Giraldo et al. PLANT PHYSIOLOGY
- SoybeanSAT1(Symbiotic Ammonium Transporter 1) encodes a bHLH transcription factor involved in nodule growth and NH4+transport
- (2014) David M. Chiasson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A single evolutionary innovation drives the deep evolution of symbiotic N2-fixation in angiosperms
- (2014) Gijsbert D. A. Werner et al. Nature Communications
- Transport and Metabolism in Legume-Rhizobia Symbioses
- (2013) Michael Udvardi et al. Annual Review of Plant Biology
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- GenomeTools: A Comprehensive Software Library for Efficient Processing of Structured Genome Annotations
- (2013) Gordon Gremme et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution
- (2013) Ignazio Verde et al. NATURE GENETICS
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- Speak, friend and enter: signalling systems that promote beneficial symbiotic associations in plants
- (2013) Giles E. D. Oldroyd NATURE REVIEWS MICROBIOLOGY
- MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations
- (2013) M. S. Campbell et al. PLANT PHYSIOLOGY
- Molecular phylogenetics and character evolution of Cannabaceae
- (2013) Mei-Qing Yang et al. TAXON
- Copy number polymorphism in plant genomes
- (2013) Agnieszka Żmieńko et al. THEORETICAL AND APPLIED GENETICS
- Draft genome sequence of the mulberry tree Morus notabilis
- (2013) Ningjia He et al. Nature Communications
- NODULE INCEPTION Directly Targets NF-Y Subunit Genes to Regulate Essential Processes of Root Nodule Development in Lotus japonicus
- (2013) Takashi Soyano et al. PLoS Genetics
- NonlegumeParasponia andersoniiDeploys a Broad Rhizobium Host Range Strategy Resulting in Largely Variable Symbiotic Effectiveness
- (2012) Rik H. M. Op den Camp et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Efficiency of Agrobacterium rhizogenes–mediated root transformation of Parasponia and Trema is temperature dependent
- (2012) Qingqin Cao et al. PLANT GROWTH REGULATION
- Functional Domain Analysis of the Remorin Protein LjSYMREM1 in Lotus japonicus
- (2012) Katalin Tóth et al. PLoS One
- One-Step Agrobacterium Mediated Transformation of Eight Genes Essential for Rhizobium Symbiotic Signaling Using the Novel Binary Vector System pHUGE
- (2012) Andreas Untergasser et al. PLoS One
- Legume receptors perceive the rhizobial lipochitin oligosaccharide signal molecules by direct binding
- (2012) A. Broghammer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Crystal Structures ofParasponiaandTremaHemoglobins: Differential Heme Coordination Is Linked to Quaternary Structure
- (2011) Smita Kakar et al. BIOCHEMISTRY
- Medicago truncatula IPD3Is a Member of the Common Symbiotic Signaling Pathway Required for Rhizobial and Mycorrhizal Symbioses
- (2011) Beatrix Horváth et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Phylogenetic Perspectives on the Origins of Nodulation
- (2011) Jeff J. Doyle MOLECULAR PLANT-MICROBE INTERACTIONS
- The Medicago genome provides insight into the evolution of rhizobial symbioses
- (2011) Nevin D. Young et al. NATURE
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- RATT: Rapid Annotation Transfer Tool
- (2011) Thomas D. Otto et al. NUCLEIC ACIDS RESEARCH
- TremaandParasponiaHemoglobins Reveal Convergent Evolution of Oxygen Transport in Plants
- (2010) Ryan Sturms et al. BIOCHEMISTRY
- Scaffolding pre-assembled contigs using SSPACE
- (2010) Marten Boetzer et al. BIOINFORMATICS
- Genome sequence of the palaeopolyploid soybean
- (2010) Jeremy Schmutz et al. NATURE
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- The genome of woodland strawberry (Fragaria vesca)
- (2010) Vladimir Shulaev et al. NATURE GENETICS
- The genome of the domesticated apple (Malus × domestica Borkh.)
- (2010) Riccardo Velasco et al. NATURE GENETICS
- MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences
- (2010) Y. Han et al. NUCLEIC ACIDS RESEARCH
- Vapyrin, a gene essential for intracellular progression of arbuscular mycorrhizal symbiosis, is also essential for infection by rhizobia in the nodule symbiosis of Medicago truncatula
- (2010) Jeremy D. Murray et al. PLANT JOURNAL
- High-quality draft assemblies of mammalian genomes from massively parallel sequence data
- (2010) S. Gnerre et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- LysM-Type Mycorrhizal Receptor Recruited for Rhizobium Symbiosis in Nonlegume Parasponia
- (2010) R. Op den Camp et al. SCIENCE
- Medicago truncatulaVapyrin is a novel protein required for arbuscular mycorrhizal symbiosis
- (2009) Nathan Pumplin et al. PLANT JOURNAL
- Using native and syntenically mapped cDNA alignments to improve de novo gene finding
- (2008) Mario Stanke et al. BIOINFORMATICS
- Phylogenetic patterns and diversification in the caesalpinioid legumesThis paper is one of a selection of papers published in the Special Issue on Systematics Research.
- (2008) Anne Bruneau et al. Botany
- Arbuscular mycorrhiza: the mother of plant root endosymbioses
- (2008) Martin Parniske NATURE REVIEWS MICROBIOLOGY
- CYCLOPS, a mediator of symbiotic intracellular accommodation
- (2008) K. Yano et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The RPG gene of Medicago truncatula controls Rhizobium-directed polar growth during infection
- (2008) J.-F. Arrighi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
- (2008) Brian J Haas et al. GENOME BIOLOGY
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started