Comparative and parallel genome-wide association studies for metabolic and agronomic traits in cereals

Metabolite-based genome-wide association studies in plants

(2015) Jie Luo   CURRENT OPINION IN PLANT BIOLOGY

Spatiotemporal Distribution of Phenolamides and the Genetics of Natural Variation of Hydroxycinnamoyl Spermidine in Rice

(2015) Xuekui Dong et al.   Molecular Plant

Identification and Mode of Inheritance of Quantitative Trait Loci for Secondary Metabolite Abundance in Tomato

(2015) Saleh Alseekh et al.   PLANT CELL

Genetic Determinants of the Network of Primary Metabolism and Their Relationships to Plant Performance in a Maize Recombinant Inbred Line Population

(2015) Weiwei Wen et al.   PLANT CELL

Detection of QTL for metabolic and agronomic traits in wheat with adjustments for variation at genetic loci that affect plant phenology

(2015) Camilla B. Hill et al.   PLANT SCIENCE

Molecular Genetic Dissection of Quantitative Trait Loci Regulating Rice Grain Size

(2014) Jianru Zuo et al.   Annual Review of Genetics

Synthetic biology of metabolism: using natural variation to reverse engineer systems

(2014) Daniel J Kliebenstein   CURRENT OPINION IN PLANT BIOLOGY

Comparative analyses of C4 and C3 photosynthesis in developing leaves of maize and rice

(2014) Lin Wang et al.   NATURE BIOTECHNOLOGY

Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism

(2014) Wei Chen et al.   NATURE GENETICS

RiceVarMap: a comprehensive database of rice genomic variations

(2014) Hu Zhao et al.   NUCLEIC ACIDS RESEARCH

Metabolome-genome-wide association study dissects genetic architecture for generating natural variation in rice secondary metabolism

(2014) Fumio Matsuda et al.   PLANT JOURNAL

Genome-Wide Association in Tomato Reveals 44 Candidate Loci for Fruit Metabolic Traits

(2014) C. Sauvage et al.   PLANT PHYSIOLOGY

Metabolic variation between japonica and indica rice cultivars as revealed by non-targeted metabolomics

(2014) Chaoyang Hu et al.   Scientific Reports

Natural Variations and Genome-Wide Association Studies in Crop Plants

(2013) Xuehui Huang et al.   Annual Review of Plant Biology

Phytochemical genomics — a new trend

(2013) Kazuki Saito   CURRENT OPINION IN PLANT BIOLOGY

A Novel Integrated Method for Large-Scale Detection, Identification, and Quantification of Widely Targeted Metabolites: Application in the Study of Rice Metabolomics

(2013) Wei Chen et al.   Molecular Plant

Comprehensive Dissection of Spatiotemporal Metabolic Shifts in Primary, Secondary, and Lipid Metabolism during Developmental Senescence in Arabidopsis

(2013) M. Watanabe et al.   PLANT PHYSIOLOGY

Genetic analysis of the metabolome exemplified using a rice population

(2013) L. Gong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic analysis of metabolites in apple fruits indicates an mQTL hotspot for phenolic compounds on linkage group 16

(2012) Sabaz Ali Khan et al.   JOURNAL OF EXPERIMENTAL BOTANY

A mixed-model approach for genome-wide association studies of correlated traits in structured populations

(2012) Arthur Korte et al.   NATURE GENETICS

Genomic and metabolic prediction of complex heterotic traits in hybrid maize

(2012) Christian Riedelsheimer et al.   NATURE GENETICS

Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis

(2012) Fumio Matsuda et al.   PLANT JOURNAL

Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize

(2012) C. Riedelsheimer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic analysis of metabolome–phenotype interactions: from model to crop species

(2012) Natalia Carreno-Quintero et al.   TRENDS IN GENETICS

Metabolic Profiling of a Mapping Population Exposes New Insights in the Regulation of Seed Metabolism and Seed, Fruit, and Plant Relations

(2012) David Toubiana et al.   PLoS Genetics

Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data

(2011) Jan Krumsiek et al.   BMC Systems Biology

Evaluating the effective numbers of independent tests and significant p-value thresholds in commercial genotyping arrays and public imputation reference datasets

(2011) Miao-Xin Li et al.   HUMAN GENETICS

Human metabolic individuality in biomedical and pharmaceutical research

(2011) Karsten Suhre et al.   NATURE

FaST linear mixed models for genome-wide association studies

(2011) Christoph Lippert et al.   NATURE METHODS

Tissue- and Cell-Type Specific Transcriptome Profiling of Expanding Tomato Fruit Provides Insights into Metabolic and Regulatory Specialization and Cuticle Formation

(2011) Antonio J. Matas et al.   PLANT CELL

Identification of Enzyme Activity Quantitative Trait Loci in a Solanum lycopersicum x Solanum pennellii Introgression Line Population

(2011) M.-C. Steinhauser et al.   PLANT PHYSIOLOGY

Combining Genome-Wide Association Mapping and Transcriptional Networks to Identify Novel Genes Controlling Glucosinolates in Arabidopsis thaliana

(2011) Eva K. F. Chan et al.   PLOS BIOLOGY

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

CYP93G2 Is a Flavanone 2-Hydroxylase Required for C -Glycosylflavone Biosynthesis in Rice

(2010) Yegang Du et al.   PLANT PHYSIOLOGY

The Complex Genetic Architecture of the Metabolome

(2010) Eva K. F. Chan et al.   PLoS Genetics

Metabolomics for Functional Genomics, Systems Biology, and Biotechnology

(2009) Kazuki Saito et al.   Annual Review of Plant Biology

Establishing an adjusted p-value threshold to control the family-wide type 1 error in genome wide association studies

(2009) Priya Duggal et al.   BMC GENOMICS

Genetical metabolomics: closing in on phenotypes

(2009) Joost JB Keurentjes   CURRENT OPINION IN PLANT BIOLOGY

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Identification of heterotic metabolite QTL inArabidopsis thalianaRIL and IL populations

(2009) Jan Lisec et al.   PLANT JOURNAL

Comparative Genomics of Grasses Promises a Bountiful Harvest

(2009) A. H. Paterson et al.   PLANT PHYSIOLOGY

The expression of Orysa;CycB1;1 is essential for endosperm formation and causes embryo enlargement in rice

(2009) Jing Guo et al.   PLANTA

Starch as a major integrator in the regulation of plant growth

(2009) R. Sulpice et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mode of Inheritance of Primary Metabolic Traits in Tomato

(2008) N. Schauer et al.   PLANT CELL

MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites

(2008) Fumio Matsuda et al.   PLANT JOURNAL

Metabolomics-assisted breeding: a viable option for crop improvement?

(2008) Alisdair R. Fernie et al.   TRENDS IN GENETICS

Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana

(2008) Joost JB Keurentjes et al.   GENOME BIOLOGY