Metabolomics as a Tool to Investigate Abiotic Stress Tolerance in Plants

Metabolomics of forage plants: a review

(2012) Susanne Rasmussen et al.   ANNALS OF BOTANY

Comparison of freezing tolerance, compatible solutes and polyamines in geographically diverse collections of Thellungiella sp. and Arabidopsis thaliana accessions

(2012) Yang Lee et al.   BMC PLANT BIOLOGY

Phenolic profiles of cherry tomatoes as influenced by hydric stress and rootstock technique

(2012) Eva Sánchez-Rodríguez et al.   FOOD CHEMISTRY

Exploring the plastic response to cold acclimation through metabolomics

(2012) Hervé Colinet et al.   FUNCTIONAL ECOLOGY

A Fast and Precise Method To Identify Indolic Glucosinolates and Camalexin in Plants by Combining Mass Spectrometric and Biological Information

(2012) Sara Izquierdo Zandalinas et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Drought, salt, and temperature stress-induced metabolic rearrangements and regulatory networks

(2012) J. Krasensky et al.   JOURNAL OF EXPERIMENTAL BOTANY

Responses of growth and primary metabolism of water-stressed barley roots to rehydration

(2012) Richard C. Sicher et al.   JOURNAL OF PLANT PHYSIOLOGY

Ectopic expression of a fruit phytoene synthase from Citrus paradisi Macf. promotes abiotic stress tolerance in transgenic tobacco

(2012) Luciana C. Cidade et al.   MOLECULAR BIOLOGY REPORTS

Metabolome 2.0: quantitative genetics and network biology of metabolic phenotypes

(2012) Marc-Emmanuel Dumas   Molecular BioSystems

Contribution of Genomics to Gene Discovery in Plant Abiotic Stress Responses

(2012) Yun Ma et al.   Molecular Plant

UVR8 Mediates UV-B-Induced Arabidopsis Defense Responses against Botrytis cinerea by Controlling Sinapate Accumulation

(2012) Patricia V. Demkura et al.   Molecular Plant

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

The draft genome of sweet orange (Citrus sinensis)

(2012) Qiang Xu et al.   NATURE GENETICS

Mechanisms associated with Fe-deficiency tolerance and signaling in shoots ofPisum sativum

(2012) Ahmad H. Kabir et al.   PHYSIOLOGIA PLANTARUM

Elemental and metabolite profiling of nickel hyperaccumulators from New Caledonia

(2012) Damien L. Callahan et al.   PHYTOCHEMISTRY

Administration of isothiocyanates enhances heat tolerance in Arabidopsis thaliana

(2012) Masakazu Hara et al.   PLANT GROWTH REGULATION

Physiological and molecular changes in plants grown at low temperatures

(2012) Andreas Theocharis et al.   PLANTA

Water Stress and Aphid Feeding Differentially Influence Metabolite Composition in Arabidopsis thaliana (L.)

(2012) Inga Mewis et al.   PLoS One

How do plants feel the heat?

(2012) Ron Mittler et al.   TRENDS IN BIOCHEMICAL SCIENCES

Effects of cadmium on gas exchange and phytohormone contents in citrus

(2011) M. F. López-Climent et al.   BIOLOGIA PLANTARUM

Polyamines: Natural and engineered abiotic and biotic stress tolerance in plants

(2011) Syed Sarfraz Hussain et al.   BIOTECHNOLOGY ADVANCES

Drought, metabolites, and Arabidopsis natural variation: a promising combination for understanding adaptation to water-limited environments

(2011) Paul E Verslues et al.   CURRENT OPINION IN PLANT BIOLOGY

Cell Identity Regulators Link Development and Stress Responses in the Arabidopsis Root

(2011) Anjali S. Iyer-Pascuzzi et al.   DEVELOPMENTAL CELL

Drought tolerance and antioxidant enzymatic activity in transgenic ‘Swingle’ citrumelo plants over-accumulating proline

(2011) Marília Kaphan Freitas de Campos et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis

(2011) N. W. Breakfield et al.   GENOME RESEARCH

Elevated CO2 Increases Constitutive Phenolics and Trichomes, but Decreases Inducibility of Phenolics in Brassica rapa (Brassicaceae)

(2011) David N. Karowe et al.   JOURNAL OF CHEMICAL ECOLOGY

Heme Oxygenase is Involved in the Protection Exerted by Jasmonic Acid Against Cadmium Stress in Soybean Roots

(2011) Guillermo Noriega et al.   JOURNAL OF PLANT GROWTH REGULATION

Metabolic and Phenotypic Responses of Greenhouse-Grown Maize Hybrids to Experimentally Controlled Drought Stress

(2011) Sandra Witt et al.   Molecular Plant

Selective lignin downregulation leads to constitutive defense response expression in alfalfa (Medicago sativa L.)

(2011) Lina Gallego-Giraldo et al.   NEW PHYTOLOGIST

Proteome analysis of wheat leaf under salt stress by two-dimensional difference gel electrophoresis (2D-DIGE)

(2011) L. Gao et al.   PHYTOCHEMISTRY

Comparative ionomics and metabolomics in extremophile and glycophytic Lotus species under salt stress challenge the metabolic pre-adaptation hypothesis

(2011) DIEGO H. SANCHEZ et al.   PLANT CELL AND ENVIRONMENT

Comparative metabolomics of drought acclimation in model and forage legumes

(2011) DIEGO H. SANCHEZ et al.   PLANT CELL AND ENVIRONMENT

Plant responses to insect herbivory: interactions between photosynthesis, reactive oxygen species and hormonal signalling pathways

(2011) PAVEL I. KERCHEV et al.   PLANT CELL AND ENVIRONMENT

Crosstalk between abiotic ultraviolet-B stress and biotic (flg22) stress signalling in Arabidopsis prevents flavonol accumulation in favor of pathogen defence compound production

(2011) DIRK SCHENKE et al.   PLANT CELL AND ENVIRONMENT

Corn hybrids display lower metabolite variability and complex metabolite inheritance patterns

(2011) Jan Lisec et al.   PLANT JOURNAL

Proline Accumulation Is Inhibitory to Arabidopsis Seedlings during Heat Stress

(2011) W.-T. Lv et al.   PLANT PHYSIOLOGY

New insights into the role of spermine in Arabidopsis thaliana under long-term salt stress

(2011) Analía I. Alet et al.   PLANT SCIENCE

Visualization of molecular processes associated with seed dormancy and germination using MapMan

(2011) Ronny V.L. Joosen et al.   SEED SCIENCE RESEARCH

Computational Mass Spectrometry–Based Proteomics

(2011) Lukas Käll et al.   PLoS Computational Biology

Pleiotropy, plasticity, and the evolution of plant abiotic stress tolerance

(2010) David L. Des Marais et al.   Annals of the New York Academy of Sciences

Comprehensive proteomics

(2010) Martin Beck et al.   CURRENT OPINION IN BIOTECHNOLOGY

‘Omics’ analyses of regulatory networks in plant abiotic stress responses

(2010) Kaoru Urano et al.   CURRENT OPINION IN PLANT BIOLOGY

Mechanisms of ozone tolerance in rice: characterization of two QTLs affecting leaf bronzing by gene expression profiling and biochemical analyses

(2010) Michael Frei et al.   JOURNAL OF EXPERIMENTAL BOTANY

Thioredoxin-regulated β-amylase (BAM1) triggers diurnal starch degradation in guard cells, and in mesophyll cells under osmotic stress

(2010) Concetta Valerio et al.   JOURNAL OF EXPERIMENTAL BOTANY

Abiotic and Biotic Stresses and Changes in the Lignin Content and Composition in Plants

(2010) Jullyana Cristina Magalhães Silva Moura et al.   Journal of Integrative Plant Biology

Common and divergent physiological, hormonal and metabolic responses of Arabidopsis thaliana and Thellungiella halophila to water and salt stress

(2010) Vicent Arbona et al.   JOURNAL OF PLANT PHYSIOLOGY

Proteogenomics to discover the full coding content of genomes: A computational perspective

(2010) Natalie Castellana et al.   Journal of Proteomics

Application of NMR-based metabolomics to the investigation of salt stress in maize (Zea mays)

(2010) Claire L. Gavaghan et al.   PHYTOCHEMICAL ANALYSIS

Discovering plant metabolic biomarkers for phenotype prediction using an untargeted approach

(2010) Matthias Steinfath et al.   PLANT BIOTECHNOLOGY JOURNAL

Putrescine accumulation confers drought tolerance in transgenic Arabidopsis plants over-expressing the homologous Arginine decarboxylase 2 gene

(2010) Rubén Alcázar et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Biosynthesis and emission of insect-induced methyl salicylate and methyl benzoate from rice

(2010) Nan Zhao et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants

(2010) Sarvajeet Singh Gill et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Plant molecular stress responses face climate change

(2010) Ishita Ahuja et al.   TRENDS IN PLANT SCIENCE

Metabolomics for Functional Genomics, Systems Biology, and Biotechnology

(2009) Kazuki Saito et al.   Annual Review of Plant Biology

Integrated omics approaches in plant systems biology

(2009) Atsushi Fukushima et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Untargeted metabolite analysis of healthy and Huanglongbing-infected orange leaves by CE-DAD

(2009) Juan Manuel Cevallos-Cevallos et al.   ELECTROPHORESIS

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

(2009) S. A. Filichkin et al.   GENOME RESEARCH

A powerful and flexible linear mixed model framework for the analysis of relative quantification RT-PCR data

(2009) Juan Pedro Steibel et al.   GENOMICS

Plant Phenotype Demarcation Using Nontargeted LC-MS and GC-MS Metabolite Profiling

(2009) Vicent Arbona et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Effect of Genotype and Environment on Citrus Juice Carotenoid Content

(2009) Claudie Dhuique-Mayer et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Differential gene expression analysis provides new insights into the molecular basis of iron deficiency stress response in the citrus rootstock Poncirus trifoliata (L.) Raf.

(2009) M. A. Forner-Giner et al.   JOURNAL OF EXPERIMENTAL BOTANY

Metabolic responses to salt stress of barley (Hordeum vulgare L.) cultivars, Sahara and Clipper, which differ in salinity tolerance

(2009) Widodo et al.   JOURNAL OF EXPERIMENTAL BOTANY

COMPOSITION OF MAJOR FLAVANONE GLYCOSIDES AND ANTIOXIDANT CAPACITY OF THREE CITRUS VARIETIES

(2009) GUIHUA XU et al.   JOURNAL OF FOOD BIOCHEMISTRY

Modulation of the antioxidant system in citrus under waterlogging and subsequent drainage

(2009) Zahed Hossain et al.   JOURNAL OF PLANT PHYSIOLOGY

Predicting Arabidopsis Freezing Tolerance and Heterosis in Freezing Tolerance from Metabolite Composition

(2009) Marina Korn et al.   Molecular Plant

Sample preparation for plant metabolomics

(2009) Hye Kyong Kim et al.   PHYTOCHEMICAL ANALYSIS

Cold stress and acclimation - what is important for metabolic adjustment?

(2009) A. Janská et al.   PLANT BIOLOGY

Identification of heterotic metabolite QTL inArabidopsis thalianaRIL and IL populations

(2009) Jan Lisec et al.   PLANT JOURNAL

Plant MetGenMAP: An Integrative Analysis System for Plant Systems Biology

(2009) J.-G. Joung et al.   PLANT PHYSIOLOGY

VirtualPlant: A Software Platform to Support Systems Biology Research

(2009) M. S. Katari et al.   PLANT PHYSIOLOGY

Upgrading Root Physiology for Stress Tolerance by Ectomycorrhizas: Insights from Metabolite and Transcriptional Profiling into Reprogramming for Stress Anticipation

(2009) Z.-B. Luo et al.   PLANT PHYSIOLOGY

Proline: a multifunctional amino acid

(2009) László Szabados et al.   TRENDS IN PLANT SCIENCE

Photosynthesis under drought and salt stress: regulation mechanisms from whole plant to cell

(2008) M. M. Chaves et al.   ANNALS OF BOTANY

Flooding Stress: Acclimations and Genetic Diversity

(2008) J. Bailey-Serres et al.   Annual Review of Plant Biology

Mechanisms of Salinity Tolerance

(2008) Rana Munns et al.   Annual Review of Plant Biology

TagFinder for the quantitative analysis of gas chromatography—mass spectrometry (GC-MS)-based metabolite profiling experiments

(2008) Alexander Luedemann et al.   BIOINFORMATICS

Maintenance of a high photosynthetic performance is linked to flooding tolerance in citrus

(2008) Vicent Arbona et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Flavonoid Profiling in Leaves of Citrus Genotypes under Different Environmental Situations

(2008) Jules D. Djoukeng et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Instrumental and experimental effects in LC–MS-based metabolomics

(2008) Lyle Burton et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

UPLC–TOF-MS for plant metabolomics: A sequential approach for wound marker analysis in Arabidopsis thaliana

(2008) Elia Grata et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Trehalose Biosynthesis in Response to Abiotic Stresses

(2008) Mihaela Iordachescu et al.   Journal of Integrative Plant Biology

Hormonal Modulation of Citrus Responses to Flooding

(2008) Vicent Arbona et al.   JOURNAL OF PLANT GROWTH REGULATION

Integration of Metabolomic and Proteomic Phenotypes

(2008) Stefanie Wienkoop et al.   MOLECULAR & CELLULAR PROTEOMICS

Heat stress: an overview of molecular responses in photosynthesis

(2008) Suleyman I. Allakhverdiev et al.   PHOTOSYNTHESIS RESEARCH

Antioxidant enzymatic activity is linked to waterlogging stress tolerance in citrus

(2008) Vicent Arbona et al.   PHYSIOLOGIA PLANTARUM

Metabolome and water status phenotyping ofArabidopsisunder abiotic stress cues reveals new insight intoESK1function

(2008) RAPHAEL LUGAN et al.   PLANT CELL AND ENVIRONMENT

Quality control for plant metabolomics: reporting MSI-compliant studies

(2008) Oliver Fiehn et al.   PLANT JOURNAL

Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics

(2008) Kaoru Urano et al.   PLANT JOURNAL

MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites

(2008) Fumio Matsuda et al.   PLANT JOURNAL

Galactinol and Raffinose Constitute a Novel Function to Protect Plants from Oxidative Damage

(2008) A. Nishizawa et al.   PLANT PHYSIOLOGY

A Central Role of Abscisic Acid in Stress-Regulated Carbohydrate Metabolism

(2008) Stefan Kempa et al.   PLoS One

Cell Identity Mediates the Response of Arabidopsis Roots to Abiotic Stress

(2008) J. R. Dinneny et al.   SCIENCE

Metabolomics-assisted breeding: a viable option for crop improvement?

(2008) Alisdair R. Fernie et al.   TRENDS IN GENETICS

GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function

(2008) Sara Mostafavi et al.   GENOME BIOLOGY

Visualization of GC/TOF-MS-Based Metabolomics Data for Identification of Biochemically Interesting Compounds Using OPLS Class Models

(2007) Susanne Wiklund et al.   ANALYTICAL CHEMISTRY

Drought tolerance improvement in crop plants: An integrated view from breeding to genomics

(2007) Luigi Cattivelli et al.   FIELD CROPS RESEARCH

Comparative salt tolerance analysis between Arabidopsis thaliana and Thellungiella halophila, with special emphasis on K+/Na+ selectivity and proline accumulation

(2007) Mohamed Ali Ghars et al.   JOURNAL OF PLANT PHYSIOLOGY