Metabolome-genome-wide association study dissects genetic architecture for generating natural variation in rice secondary metabolism

Comprehensive profiling and natural variation of flavonoids in rice

(2014) Xuekui Dong et al.   Journal of Integrative Plant Biology

Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism

(2014) Wei Chen et al.   NATURE GENETICS

Metabolome-based genome-wide association study of maize kernel leads to novel biochemical insights

(2014) Weiwei Wen et al.   Nature Communications

Phytochemical genomics — a new trend

(2013) Kazuki Saito   CURRENT OPINION IN PLANT BIOLOGY

Toward better annotation in plant metabolomics: isolation and structure elucidation of 36 specialized metabolites from Oryza sativa (rice) by using MS/MS and NMR analyses

(2013) Zhigang Yang et al.   Metabolomics

PRIMe Update: Innovative Content for Plant Metabolomics and Integration of Gene Expression and Metabolite Accumulation

(2013) Tetsuya Sakurai et al.   PLANT AND CELL PHYSIOLOGY

Whole-Genome Mapping of Agronomic and Metabolic Traits to Identify Novel Quantitative Trait Loci in Bread Wheat Grown in a Water-Limited Environment

(2013) C. B. Hill et al.   PLANT PHYSIOLOGY

Genetic analysis of the metabolome exemplified using a rice population

(2013) L. Gong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MS/MS networking guided analysis of molecule and gene cluster families

(2013) D. D. Nguyen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plants vs. Cancer: A Review on Natural Phytochemicals in Preventing and Treating Cancers and Their Druggability

(2012) Hu Wang et al.   Anti-Cancer Agents in Medicinal Chemistry

RIKEN tandem mass spectral database (ReSpect) for phytochemicals: A plant-specific MS/MS-based data resource and database

(2012) Yuji Sawada et al.   PHYTOCHEMISTRY

Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis

(2012) Fumio Matsuda et al.   PLANT JOURNAL

Genome-Wide Haplotype Changes Produced by Artificial Selection during Modern Rice Breeding in Japan

(2012) Jun-ichi Yonemaru et al.   PLoS One

Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize

(2012) C. Riedelsheimer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mass spectral molecular networking of living microbial colonies

(2012) J. Watrous et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic analysis of metabolome–phenotype interactions: from model to crop species

(2012) Natalia Carreno-Quintero et al.   TRENDS IN GENETICS

Convergent Evolution in Plant Specialized Metabolism

(2011) Eran Pichersky et al.   Annual Review of Plant Biology

MetAlign 3.0: performance enhancement by efficient use of advances in computer hardware

(2011) Arjen Lommen et al.   Metabolomics

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm

(2011) Xuehui Huang et al.   NATURE GENETICS

KNApSAcK Family Databases: Integrated Metabolite–Plant Species Databases for Multifaceted Plant Research

(2011) Farit Mochamad Afendi et al.   PLANT AND CELL PHYSIOLOGY

Isolation, Characterization and Quantification of Tricin and Flavonolignans in the Medicinal Rice Njavara (Oryza sativa L.), as Compared to Staple Varieties

(2011) Smitha Mohanlal et al.   PLANT FOODS FOR HUMAN NUTRITION

Natural Variation in Arabidopsis: From Molecular Genetics to Ecological Genomics

(2011) D. Weigel   PLANT PHYSIOLOGY

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

(2011) Keyan Zhao et al.   Nature Communications

Combining Genome-Wide Association Mapping and Transcriptional Networks to Identify Novel Genes Controlling Glucosinolates in Arabidopsis thaliana

(2011) Eva K. F. Chan et al.   PLOS BIOLOGY

Mass Spectra-Based Framework for Automated Structural Elucidation of Metabolome Data to Explore Phytochemical Diversity

(2011) Fumio Matsuda et al.   Frontiers in Plant Science

Genome-wide association studies in plants: the missing heritability is in the field

(2011) Benjamin Brachi et al.   GENOME BIOLOGY

MassBank: a public repository for sharing mass spectral data for life sciences

(2010) Hisayuki Horai et al.   JOURNAL OF MASS SPECTROMETRY

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

The Complex Genetic Architecture of the Metabolome

(2010) Eva K. F. Chan et al.   PLoS Genetics

Metabolomics for Functional Genomics, Systems Biology, and Biotechnology

(2009) Kazuki Saito et al.   Annual Review of Plant Biology

Understanding the Evolution of Defense Metabolites in Arabidopsis thaliana Using Genome-wide Association Mapping

(2009) E. K. F. Chan et al.   GENETICS

TheC-Glycosylation of Flavonoids in Cereals

(2009) Melissa Brazier-Hicks et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Cardiovascular protective flavonolignans and flavonoids from Calamus quiquesetinervius

(2009) Chao-Lin Chang et al.   PHYTOCHEMISTRY

Advancing Genetic Theory and Application by Metabolic Quantitative Trait Loci Analysis

(2009) DanielJ. Kliebenstein   PLANT CELL

Identification of heterotic metabolite QTL inArabidopsis thalianaRIL and IL populations

(2009) Jan Lisec et al.   PLANT JOURNAL

AtMetExpress Development: A Phytochemical Atlas of Arabidopsis Development

(2009) F. Matsuda et al.   PLANT PHYSIOLOGY

Molecular characterization of flavonoid malonyltransferase from Oryza sativa

(2009) Dea Hwan Kim et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

(2009) K. L. McNally et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Efficient Control of Population Structure in Model Organism Association Mapping

(2008) H. M. Kang et al.   GENETICS

Heritability in the genomics era — concepts and misconceptions

(2008) Peter M. Visscher et al.   NATURE REVIEWS GENETICS

Biochemical Networks and Epistasis Shape the Arabidopsis thaliana Metabolome

(2008) H. C. Rowe et al.   PLANT CELL

Mode of Inheritance of Primary Metabolic Traits in Tomato

(2008) N. Schauer et al.   PLANT CELL

MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites

(2008) Fumio Matsuda et al.   PLANT JOURNAL

Metabolome Analysis of Biosynthetic Mutants Reveals a Diversity of Metabolic Changes and Allows Identification of a Large Number of New Compounds in Arabidopsis

(2008) C. Bottcher et al.   PLANT PHYSIOLOGY

The Impact of the Absence of Aliphatic Glucosinolates on Insect Herbivory in Arabidopsis

(2008) Jules Beekwilder et al.   PLoS One

Genetic dissection and pyramiding of quantitative traits for panicle architecture by using chromosomal segment substitution lines in rice

(2008) Tsuyu Ando et al.   THEORETICAL AND APPLIED GENETICS

Four glucosyltransferases from rice: cDNA cloning, expression, and characterization

(2007) Jae Hyung Ko et al.   JOURNAL OF PLANT PHYSIOLOGY