Metabolomic analysis of tomato seed germination

Environmental and genetic effects on tomato seed metabolic balance and its association with germination vigor

(2016) Leah Rosental et al.   BMC GENOMICS

Integrated bioinformatics to decipher the ascorbic acid metabolic network in tomato

(2016) Valentino Ruggieri et al.   PLANT MOLECULAR BIOLOGY

Correlation-Based Network Analysis of Metabolite and Enzyme Profiles Reveals a Role of Citrate Biosynthesis in Modulating N and C Metabolism in Zea mays

(2016) David Toubiana et al.   Frontiers in Plant Science

Identification and Mode of Inheritance of Quantitative Trait Loci for Secondary Metabolite Abundance in Tomato

(2015) Saleh Alseekh et al.   PLANT CELL

A Systems Genetics Approach Identifies Gene Regulatory Networks Associated with Fatty Acid Composition in Brassica rapa Seed

(2015) Ram Kumar Basnet et al.   PLANT PHYSIOLOGY

Combined correlation-based network and mQTL analyses efficiently identified loci for branched-chain amino acid, serine to threonine, and proline metabolism in tomato seeds

(2014) David Toubiana et al.   PLANT JOURNAL

Activation and regulation of primary metabolism during seed germination

(2014) Leah Rosental et al.   SEED SCIENCE RESEARCH

Expression Quantitative Trait Locus Mapping across Water Availability Environments Reveals Contrasting Associations with Genomic Features in Arabidopsis

(2013) D. B. Lowry et al.   PLANT CELL

Identifying Genotype-by-Environment Interactions in the Metabolism of Germinating Arabidopsis Seeds Using Generalized Genetical Genomics

(2013) R. V. L. Joosen et al.   PLANT PHYSIOLOGY

Expression variation in connected recombinant populations of Arabidopsis thaliana highlights distinct transcriptome architectures

(2012) Francisco A Cubillos et al.   BMC GENOMICS

Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis

(2012) Fumio Matsuda et al.   PLANT JOURNAL

Untargeted Metabolic Quantitative Trait Loci Analyses Reveal a Relationship between Primary Metabolism and Potato Tuber Quality

(2012) N. Carreno-Quintero et al.   PLANT PHYSIOLOGY

Unravelling the complex trait of seed quality: using natural variation through a combination of physiology, genetics and -omics technologies

(2012) Wilco Ligterink et al.   SEED SCIENCE RESEARCH

Metabolic Profiling of a Mapping Population Exposes New Insights in the Regulation of Seed Metabolism and Seed, Fruit, and Plant Relations

(2012) David Toubiana et al.   PLoS Genetics

Metabolomic correlation-network modules in Arabidopsis based on a graph-clustering approach

(2011) Atsushi Fukushima et al.   BMC Systems Biology

MSClust: a tool for unsupervised mass spectra extraction of chromatography-mass spectrometry ion-wise aligned data

(2011) Y. M. Tikunov et al.   Metabolomics

Characterizing gene coexpression modules in Oryza sativa based on a graph-clustering approach

(2011) Atsushi Fukushima et al.   Plant Biotechnology

Principal transcriptional regulation and genome-wide system interactions of the Asp-family and aromatic amino acid networks of amino acid metabolism in plants

(2010) Hadar Less et al.   AMINO ACIDS

R/qtl: high-throughput multiple QTL mapping: Fig. 1.

(2010) Danny Arends et al.   BIOINFORMATICS

Impact of Genetics and Environment on the Metabolite Composition of Maize Grain

(2010) Kirsten Skogerson et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Metabolic and Signaling Aspects Underpinning the Regulation of Plant Carbon Nitrogen Interactions

(2010) Adriano Nunes-Nesi et al.   Molecular Plant

Network Analysis of Enzyme Activities and Metabolite Levels and Their Relationship to Biomass in a Large Panel of Arabidopsis Accessions

(2010) R. Sulpice et al.   PLANT CELL

Relationships between Growth, Growth Response to Nutrient Supply, and Ion Content Using a Recombinant Inbred Line Population in Arabidopsis

(2010) A. E. Prinzenberg et al.   PLANT PHYSIOLOGY

Cross-Platform Comparison of Methods for Quantitative Metabolomics of Primary Metabolism

(2009) Jörg Martin Büscher et al.   ANALYTICAL CHEMISTRY

MetAlign: Interface-Driven, Versatile Metabolomics Tool for Hyphenated Full-Scan Mass Spectrometry Data Preprocessing

(2009) Arjen Lommen   ANALYTICAL CHEMISTRY

designGG: an R-package and web tool for the optimal design of genetical genomics experiments

(2009) Yang Li et al.   BMC BIOINFORMATICS

Coordinations between gene modules control the operation of plant amino acid metabolic networks

(2009) Hadar Less et al.   BMC Systems Biology

Genetical metabolomics: closing in on phenotypes

(2009) Joost JB Keurentjes   CURRENT OPINION IN PLANT BIOLOGY

Metabolomic Screening Applied to Rice FOX Arabidopsis Lines Leads to the Identification of a Gene-Changing Nitrogen Metabolism

(2009) Doris Albinsky et al.   Molecular Plant

KEGG for representation and analysis of molecular networks involving diseases and drugs

(2009) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Advancing Genetic Theory and Application by Metabolic Quantitative Trait Loci Analysis

(2009) DanielJ. Kliebenstein   PLANT CELL

Identification of heterotic metabolite QTL inArabidopsis thalianaRIL and IL populations

(2009) Jan Lisec et al.   PLANT JOURNAL

Retention index thresholds for compound matching in GC–MS metabolite profiling

(2008) Nadine Strehmel et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Epistasis — the essential role of gene interactions in the structure and evolution of genetic systems

(2008) Patrick C. Phillips   NATURE REVIEWS GENETICS

Biochemical Networks and Epistasis Shape the Arabidopsis thaliana Metabolome

(2008) H. C. Rowe et al.   PLANT CELL

Mode of Inheritance of Primary Metabolic Traits in Tomato

(2008) N. Schauer et al.   PLANT CELL

Generalizing genetical genomics: getting added value from environmental perturbation

(2008) Yang Li et al.   TRENDS IN GENETICS

Convergent energy and stress signaling

(2008) Elena Baena-González et al.   TRENDS IN PLANT SCIENCE

Genetical Genomics: Spotlight on QTL Hotspots

(2008) Rainer Breitling et al.   PLoS Genetics

Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana

(2008) Joost JB Keurentjes et al.   GENOME BIOLOGY