Recent Advances in Carbon and Nitrogen Metabolism in C3 Plants

Transcriptome Analysis Reveals Differences in Key Genes and Pathways Regulating Carbon and Nitrogen Metabolism in Cotton Genotypes under N Starvation and Resupply

(2020) Asif Iqbal et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Tissue-Specific Regulation of Plastid Protein Import Is Implemented through Transit-Peptide Motifs

(2020) Chiung-Chih Chu et al.   PLANT CELL

Scent of a Killer: Microbial Volatilome and Its Role in the Biological Control of Plant Pathogens

(2020) Bruno Tilocca et al.   Frontiers in Microbiology

Functional Analysis of Rice Long-Chain Acyl-CoA Synthetase 9 (OsLACS9) in the Chloroplast Envelope Membrane

(2020) Aya Kitajima-Koga et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Oryza sativa Lysine‐Histidine‐type Transporter 1 functions in root uptake and root‐to‐shoot allocation of amino acids in rice

(2020) Nan Guo et al.   PLANT JOURNAL

Genome-scale metabolic reconstruction of the symbiosis between a leguminous plant and a nitrogen-fixing bacterium

(2020) George C. diCenzo et al.   Nature Communications

Photosynthesis in a Changing Global Climate: Scaling Up and Scaling Down in Crops

(2020) Marouane Baslam et al.   Frontiers in Plant Science

Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality

(2020) Nan Guo et al.   Frontiers in Plant Science

Effects of Different Chemical Forms of Nitrogen on the Quick and Reversible Inhibition of Soybean Nodule Growth and Nitrogen Fixation Activity

(2019) Natsumi Yamashita et al.   Frontiers in Plant Science

Single-cell RNA sequencing resolves molecular relationships among individual plant cells

(2019) Kook Hui Ryu et al.   PLANT PHYSIOLOGY

Triose phosphate utilization and beyond: from photosynthesis to end product synthesis

(2019) Alan M McClain et al.   JOURNAL OF EXPERIMENTAL BOTANY

An Integrated Analysis of the Rice Transcriptome and Metabolome Reveals Differential Regulation of Carbon and Nitrogen Metabolism in Response to Nitrogen Availability

(2019) Wei Xin et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Ammonium mediated changes in carbon and nitrogen metabolisms induce resistance against Pseudomonas syringae in tomato plants

(2019) Ana Isabel González-Hernández et al.   JOURNAL OF PLANT PHYSIOLOGY

Unravelling hidden components of the chloroplast envelope proteome: opportunities and limits of better MS sensitivity

(2019) Imen Bouchnak et al.   MOLECULAR & CELLULAR PROTEOMICS

Transcriptomic and metabolomic profiling of drought-tolerant and susceptible sesame genotypes in response to drought stress

(2019) Jun You et al.   BMC PLANT BIOLOGY

Transcripts and low nitrogen tolerance: Regulatory and metabolic pathways in sugarcane under low nitrogen stress

(2019) Yingying Yang et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Plant responses to fungal volatiles involve global posttranslational thiol redox proteome changes that affect photosynthesis

(2019) Kinia Ameztoy et al.   PLANT CELL AND ENVIRONMENT

Root exudates: from plant to rhizosphere and beyond

(2019) Vicente Vives-Peris et al.   PLANT CELL REPORTS

A protein complex required for polar growth of rhizobial infection threads

(2019) Cheng-Wu Liu et al.   Nature Communications

Exploring regulatory networks in plants: transcription factors of starch metabolism

(2019) Cristal López-González et al.   PeerJ

Transcriptomic and Metabolomics Analysis of Different Endosperm Region under Nitrogen Treatments

(2019) Dongyun Ma et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change

(2019) Ashish A. Malik et al.   ISME Journal

Autophagy controls reactive oxygen species homeostasis in guard cells that is essential for stomatal opening

(2019) Shota Yamauchi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular mechanisms underlying phytochrome-controlled morphogenesis in plants

(2019) Martina Legris et al.   Nature Communications

Proteomic and metabolomic analysis of desiccation tolerance in wheat young seedlings

(2019) Parisa Koobaz et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Essential roles of autophagy in metabolic regulation in endosperm development during rice seed maturation

(2019) Yuri Sera et al.   Scientific Reports

De Novo Transcriptome Analysis of Durum Wheat Flag Leaves Provides New Insights Into the Regulatory Response to Elevated CO2 and High Temperature

(2019) Rubén Vicente et al.   Frontiers in Plant Science

Chloroplast Protein Turnover: The Influence of Extraplastidic Processes, Including Autophagy

(2018) Masanori Izumi et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The Role of Sugar Transporter Genes during Early Infection by Root-Knot Nematodes

(2018) Dan Zhao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Ethylene Responsive Factor MeERF72 Negatively Regulates Sucrose synthase 1 Gene in Cassava

(2018) Chen Liu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Comparative Methods for Molecular Determination of Host-Specificity Factors in Plant-Pathogenic Fungi

(2018) et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Protein Activity of the Fusarium fujikuroi Rhodopsins CarO and OpsA and Their Relation to Fungus–Plant Interaction

(2018) Alexander Adam et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Storage nitrogen co-ordinates leaf expansion and photosynthetic capacity in winter oilseed rape

(2018) Tao Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Sugars en route to the roots. Transport, metabolism and storage within plant roots and towards microorganisms of the rhizosphere

(2018) Nils Hennion et al.   PHYSIOLOGIA PLANTARUM

Unveiling the molecular mechanisms of plant autophagy – from autophagosomes to vacuoles in plants

(2018) Kohki Yoshimoto* et al.   PLANT AND CELL PHYSIOLOGY

Novel transcription factors PvBMY1 and PvBMY3 increase biomass yield in greenhouse-grown switchgrass ( Panicum virgatum L.)

(2018) Madana M.R. Ambavaram et al.   PLANT SCIENCE

Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota

(2018) Lingfei Hu et al.   Nature Communications

Improving biomass and starch accumulation of bioenergy crop duckweed (Landoltia punctata) by abscisic acid application

(2018) Yang Liu et al.   Scientific Reports

Optimized Method of Extracting Rice Chloroplast DNA for High-Quality Plastome Resequencing and de Novo Assembly

(2018) Takeshi Takamatsu et al.   Frontiers in Plant Science

The Chemistry of Plant–Microbe Interactions in the Rhizosphere and the Potential for Metabolomics to Reveal Signaling Related to Defense Priming and Induced Systemic Resistance

(2018) Msizi I. Mhlongo et al.   Frontiers in Plant Science

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly

(2018) Kateryna Zhalnina et al.   Nature Microbiology

Time-Course of Metabolic and Proteomic Responses to Different Nitrate/Ammonium Availabilities in Roots and Leaves of Maize

(2018) Bhakti Prinsi et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Proteomics Analysis Reveals Non-Controlled Activation of Photosynthesis and Protein Synthesis in a Rice npp1 Mutant under High Temperature and Elevated CO2 Conditions

(2018) Takuya Inomata et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Modulating plant growth–metabolism coordination for sustainable agriculture

(2018) Shan Li et al.   NATURE

Impairment of FtsHi5 Function Affects Cellular Redox Balance and Photorespiratory Metabolism in Arabidopsis

(2018) Ting Wang et al.   PLANT AND CELL PHYSIOLOGY

Monitoring ratio of carbon to nitrogen (C/N) in wheat and barley leaves by using spectral slope features with branch-and-bound algorithm

(2018) Xingang Xu et al.   Scientific Reports

Fungi Indirectly Affect Plant Root Architecture by Modulating Soil Volatile Organic Compounds

(2018) Denis Schenkel et al.   Frontiers in Microbiology

Redox Regulation of Starch Metabolism

(2018) Katsiaryna Skryhan et al.   Frontiers in Plant Science

Domestication of wild tomato is accelerated by genome editing

(2018) Tingdong Li et al.   NATURE BIOTECHNOLOGY

Laser microdissection-based tissue specific transcriptome analyses reveals novel regulatory network of genes involved in heat-induced grain chalk in rice endosperm

(2018) Tsutomu Ishimaru et al.   PLANT AND CELL PHYSIOLOGY

NF ‐ YB 1‐ YC 12‐ bHLH 144 complex directly activates Wx to regulate grain quality in rice ( Oryza sativa L.)

(2018) Babatunde Kazeem Bello et al.   PLANT BIOTECHNOLOGY JOURNAL

Volatile compounds other than CO2 emitted by different microorganisms promote distinct posttranscriptionally regulated responses in plants

(2018) Pablo García-Gómez et al.   PLANT CELL AND ENVIRONMENT

Carbon/Nitrogen Metabolic Balance: Lessons from Cyanobacteria

(2018) Cheng-Cai Zhang et al.   TRENDS IN PLANT SCIENCE

Interaction and Regulation of Carbon, Nitrogen, and Phosphorus Metabolisms in Root Nodules of Legumes

(2018) Ailin Liu et al.   Frontiers in Plant Science

Transcriptome Analysis of Tomato Leaf Spot Pathogen Fusarium proliferatum: De novo Assembly, Expression Profiling, and Identification of Candidate Effectors

(2017) Meiling Gao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Identification and Initial Characterization of the Effectors of an Anther Smut Fungus and Potential Host Target Proteins

(2017) Venkata Kuppireddy et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Reduced Drought Tolerance by CRISPR/Cas9-Mediated SlMAPK3 Mutagenesis in Tomato Plants

(2017) Liu Wang et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

How do plants sense their nitrogen status?

(2017) Lucas Gent et al.   JOURNAL OF EXPERIMENTAL BOTANY

Fluxomics links cellular functional analyses to whole-plant phenotyping

(2017) Christophe Salon et al.   JOURNAL OF EXPERIMENTAL BOTANY

Nutrient Exchange and Regulation in Arbuscular Mycorrhizal Symbiosis

(2017) Wanxiao Wang et al.   Molecular Plant

Arbuscular mycorrhiza-specific enzymes FatM and RAM2 fine-tune lipid biosynthesis to promote development of arbuscular mycorrhiza

(2017) Armando Bravo et al.   NEW PHYTOLOGIST

Plant Signaling and Metabolic Pathways Enabling Arbuscular Mycorrhizal Symbiosis

(2017) Allyson M. MacLean et al.   PLANT CELL

Effects of discrete bioactive microbial volatiles on plants and fungi

(2017) Birgit Piechulla et al.   PLANT CELL AND ENVIRONMENT

Growth rate correlates negatively with protein turnover in Arabidopsis accessions

(2017) Hirofumi Ishihara et al.   PLANT JOURNAL

A SIMPLE Pipeline for Mapping Point Mutations

(2017) Guy Wachsman et al.   PLANT PHYSIOLOGY

Fatty acids in arbuscular mycorrhizal fungi are synthesized by the host plant

(2017) Leonie H. Luginbuehl et al.   SCIENCE

Plants transfer lipids to sustain colonization by mutualistic mycorrhizal and parasitic fungi

(2017) Yina Jiang et al.   SCIENCE

Analysis of Microbial Functions in the Rhizosphere Using a Metabolic-Network Based Framework for Metagenomics Interpretation

(2017) Shany Ofaim et al.   Frontiers in Microbiology

Microbial Volatiles: Small Molecules with an Important Role in Intra- and Inter-Kingdom Interactions

(2017) Kristin Schulz-Bohm et al.   Frontiers in Microbiology

Metabolomics for Plant Improvement: Status and Prospects

(2017) Rakesh Kumar et al.   Frontiers in Plant Science

Metabolomics Reveals Distinct Carbon and Nitrogen Metabolic Responses to Magnesium Deficiency in Leaves and Roots of Soybean [Glycine max (Linn.) Merr.]

(2017) Na Yang et al.   Frontiers in Plant Science

High Temperature-Induced Expression of Rice α-Amylases in Developing Endosperm Produces Chalky Grains

(2017) Masaru Nakata et al.   Frontiers in Plant Science

Application of CRISPR/Cas9 in plant biology

(2017) Xuan Liu et al.   Acta Pharmaceutica Sinica B

Metabolic Flux Redirection and Transcriptomic Reprogramming in the Albino Tea Cultivar ‘Yu-Jin-Xiang’ with an Emphasis on Catechin Production

(2017) Guo-Feng Liu et al.   Scientific Reports

Plant fluid proteomics: Delving into the xylem sap, phloem sap and apoplastic fluid proteomes

(2016) Jorge Rodríguez-Celma et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Transcriptome sequencing and metabolite analysis for revealing the blue flower formation in waterlily

(2016) Qian Wu et al.   BMC GENOMICS

Shoot-to-Root Mobile Transcription Factor HY5 Coordinates Plant Carbon and Nitrogen Acquisition

(2016) Xiangbin Chen et al.   CURRENT BIOLOGY

Mathematical models of plant metabolism

(2016) Hai Shi et al.   CURRENT OPINION IN BIOTECHNOLOGY

Plant Metabolomics: An Indispensable System Biology Tool for Plant Science

(2016) Jun Hong et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Use of transcriptomics and co-expression networks to analyze the interconnections between nitrogen assimilation and photorespiratory metabolism

(2016) Carmen M. Pérez-Delgado et al.   JOURNAL OF EXPERIMENTAL BOTANY

Perspectives for a better understanding of the metabolic integration of photorespiration within a complex plant primary metabolism network

(2016) Michael Hodges et al.   JOURNAL OF EXPERIMENTAL BOTANY

Network analysis of the metabolome and transcriptome reveals novel regulation of potato pigmentation

(2016) Kyoungwon Cho et al.   JOURNAL OF EXPERIMENTAL BOTANY

Microbial symbionts affect Pisum sativum proteome and metabolome under Didymella pinodes infection

(2016) G. Desalegn et al.   Journal of Proteomics

Root-emitted volatile organic compounds: can they mediate belowground plant-plant interactions?

(2016) Benjamin M. Delory et al.   PLANT AND SOIL

Fusarium oxysporummediates systems metabolic reprogramming of chickpea roots as revealed by a combination of proteomics and metabolomics

(2016) Yashwant Kumar et al.   PLANT BIOTECHNOLOGY JOURNAL

Identification and characterization of a fusarium head blight resistance geneTaACTin wheat QTL-2DL

(2016) Udaykumar Kage et al.   PLANT BIOTECHNOLOGY JOURNAL

Volatile compounds emitted by diverse phytopathogenic microorganisms promote plant growth and flowering through cytokinin action

(2016) Ángela María Sánchez-López et al.   PLANT CELL AND ENVIRONMENT

Integrated analysis of rice transcriptomic and metabolomic responses to elevated night temperatures identifies sensitivity- and tolerance-related profiles

(2016) Ulrike Glaubitz et al.   PLANT CELL AND ENVIRONMENT

Arabidopsis Responds to Alternaria alternata Volatiles by Triggering Plastid Phosphoglucose Isomerase-Independent Mechanisms

(2016) Ángela María Sánchez-López et al.   PLANT PHYSIOLOGY

Transcriptomic Analysis of Responses to Imbalanced Carbon: Nitrogen Availabilities in Rice Seedlings

(2016) Aobo Huang et al.   PLoS One

Crop responses to nitrogen overfertilization: A review

(2016) Francisco Albornoz   SCIENTIA HORTICULTURAE

Proteomic and Glycomic Characterization of Rice Chalky Grains Produced Under Moderate and High-temperature Conditions in Field System

(2016) Kentaro Kaneko et al.   Rice

H2O2 treatment or serum deprivation induces autophagy and apoptosis in naked mole-rat skin fibroblasts by inhibiting the PI3K/Akt signaling pathway

(2016) Shanmin Zhao et al.   Oncotarget

Proteome quantification of cotton xylem sap suggests the mechanisms of potassium-deficiency-induced changes in plant resistance to environmental stresses

(2016) Zhiyong Zhang et al.   Scientific Reports

Manipulating the Biosynthesis of Bioactive Compound Alkaloids for Next-Generation Metabolic Engineering in Opium Poppy Using CRISPR-Cas 9 Genome Editing Technology

(2016) Yagiz Alagoz et al.   Scientific Reports

Changes in SBPase activity influence photosynthetic capacity, growth, and tolerance to chilling stress in transgenic tomato plants

(2016) Fei Ding et al.   Scientific Reports

Genome-Wide Association Study Identifies Candidate Genes for Starch Content Regulation in Maize Kernels

(2016) Na Liu et al.   Frontiers in Plant Science

Vascular Sap Proteomics: Providing Insight into Long-Distance Signaling during Stress

(2016) Philip Carella et al.   Frontiers in Plant Science

A Natural Light/Dark Cycle Regulation of Carbon-Nitrogen Metabolism and Gene Expression in Rice Shoots

(2016) Haixing Li et al.   Frontiers in Plant Science

Burkholderia phytofirmans PsJN Confers Grapevine Resistance against Botrytis cinerea via a Direct Antimicrobial Effect Combined with a Better Resource Mobilization

(2016) Lidiane Miotto-Vilanova et al.   Frontiers in Plant Science

Carbon: Nitrogen Interaction Regulates Expression of Genes Involved in N-Uptake and Assimilation in Brassica juncea L.

(2016) Parul Goel et al.   PLoS One

Sucrose and ABA regulate starch biosynthesis in maize through a novel transcription factor, ZmEREB156

(2016) Huanhuan Huang et al.   Scientific Reports

Phenotypic and metabolic responses to drought and salinity of four contrasting lentil accessions

(2015) A. Muscolo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Fruit growth-related genes in tomato

(2015) Lamia Azzi et al.   JOURNAL OF EXPERIMENTAL BOTANY

ZmbZIP91 regulates expression of starch synthesis-related genes by binding to ACTCAT elements in their promoters

(2015) Jiang Chen et al.   JOURNAL OF EXPERIMENTAL BOTANY

How can we make plants grow faster? A source–sink perspective on growth rate

(2015) Angela C. White et al.   JOURNAL OF EXPERIMENTAL BOTANY

New Insights into the Mechanism of Chloroplast Protein Import and Its Integration with Protein Quality Control, Organelle Biogenesis and Development

(2015) Yamuna D. Paila et al.   JOURNAL OF MOLECULAR BIOLOGY

Comparative proteomic analysis of melon phloem exudates in response to viral infection

(2015) Marta Serra-Soriano et al.   Journal of Proteomics

iTRAQ-based quantitative proteomics analysis of Brassica napus leaves reveals pathways associated with chlorophyll deficiency

(2015) Pu Chu et al.   Journal of Proteomics

The Emergence of 2-Oxoglutarate as a Master Regulator Metabolite

(2015) Luciano F. Huergo et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

MutMap accelerates breeding of a salt-tolerant rice cultivar

(2015) Hiroki Takagi et al.   NATURE BIOTECHNOLOGY

The unravelling of the ubiquitin system

(2015) Aaron Ciechanover   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The carbon (formerly dark) reactions of photosynthesis

(2015) Bob B. Buchanan   PHOTOSYNTHESIS RESEARCH

Golgi/plastid-type manganese superoxide dismutase involved in heat-stress tolerance during grain filling of rice

(2015) Takeshi Shiraya et al.   PLANT BIOTECHNOLOGY JOURNAL

Differential CO2effect on primary carbon metabolism of flag leaves in durum wheat (Triticum durumDesf.)

(2015) Iker Aranjuelo et al.   PLANT CELL AND ENVIRONMENT

The Arabidopsis vacuolar sugar transporter SWEET2 limits carbon sequestration from roots and restrictsPythiuminfection

(2015) Hsin-Yi Chen et al.   PLANT JOURNAL

Establishment of Monitoring Methods for Autophagy in Rice Reveals Autophagic Recycling of Chloroplasts and Root Plastids during Energy Limitation

(2015) Masanori Izumi et al.   PLANT PHYSIOLOGY

CO2-Responsive CONSTANS, CONSTANS-Like, and Time of Chlorophylla/bBinding Protein Expression1 Protein Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice

(2015) Ryutaro Morita et al.   PLANT PHYSIOLOGY

Genome-Wide Association of Carbon and Nitrogen Metabolism in the Maize Nested Association Mapping Population

(2015) Nengyi Zhang et al.   PLANT PHYSIOLOGY

Integrated Metabolomics and Transcriptomics Reveal Enhanced Specialized Metabolism inMedicago truncatulaRoot Border Cells

(2015) Bonnie S. Watson et al.   PLANT PHYSIOLOGY

The quest for tolerant varieties: the importance of integrating “omics” techniques to phenotyping

(2015) Michel Zivy et al.   Frontiers in Plant Science

Chemical diversity of microbial volatiles and their potential for plant growth and productivity

(2015) Chidananda Nagamangala Kanchiswamy et al.   Frontiers in Plant Science

Nitrogen stress-induced alterations in the leaf proteome of two wheat varieties grown at different nitrogen levels

(2015) Ruby Chandna et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

OsATG7 is required for autophagy-dependent lipid metabolism in rice postmeiotic anther development

(2014) Takamitsu Kurusu et al.   Autophagy

Proteomic analysis of proteins related to rice grain chalkiness using iTRAQ and a novel comparison system based on a notched-belly mutant with white-belly

(2014) Zhaomiao Lin et al.   BMC PLANT BIOLOGY

The role of the large subunit in redox regulation of the rice endosperm ADP-glucose pyrophosphorylase

(2014) Aytug Tuncel et al.   FEBS Journal

Leaf senescence and nitrogen remobilization efficiency in oilseed rape (Brassica napus L.)

(2014) J.-C. Avice et al.   JOURNAL OF EXPERIMENTAL BOTANY

Nitrogen metabolism meets phytopathology

(2014) M. Fagard et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparative analysis of metabolic proteome variation in ascorbate-primed and unprimed wheat seeds during germination under salt stress

(2014) Azzedine Fercha et al.   Journal of Proteomics

Analysis of flooding-responsive proteins localized in the nucleus of soybean root tips

(2014) Setsuko Komatsu et al.   MOLECULAR BIOLOGY REPORTS

Flux profiling of photosynthetic carbon metabolism in intact plants

(2014) Robert Heise et al.   Nature Protocols

Exploring the transfer of recent plant photosynthates to soil microbes: mycorrhizal pathway vs direct root exudation

(2014) Christina Kaiser et al.   NEW PHYTOLOGIST

Plant Metabolic Modeling: Achieving New Insight into Metabolism and Metabolic Engineering

(2014) K. Baghalian et al.   PLANT CELL

GLUTELIN PRECURSOR ACCUMULATION3 Encodes a Regulator of Post-Golgi Vesicular Traffic Essential for Vacuolar Protein Sorting in Rice Endosperm

(2014) Y. Ren et al.   PLANT CELL

The inter-kingdom volatile signal indole promotes root development by interfering with auxin signalling

(2014) Aurélien Bailly et al.   PLANT JOURNAL

Additional Nitrogen Fertilization at Heading Time of Rice Down-Regulates Cellulose Synthesis in Seed Endosperm

(2014) Keiko Midorikawa et al.   PLoS One

HPLC-MS/MS Analyses Show That the Near-Starchless aps1 and pgm Leaves Accumulate Wild Type Levels of ADPglucose: Further Evidence for the Occurrence of Important ADPglucose Biosynthetic Pathway(s) Alternative to the pPGI-pPGM-AGP Pathway

(2014) Abdellatif Bahaji et al.   PLoS One

Calcineurin suppresses AMPK-dependent cytoprotective autophagy in cardiomyocytes under oxidative stress

(2014) H He et al.   Cell Death & Disease

Adjustment of microbial nitrogen use efficiency to carbon:nitrogen imbalances regulates soil nitrogen cycling

(2014) Maria Mooshammer et al.   Nature Communications

Niche and host-associated functional signatures of the root surface microbiome

(2014) Maya Ofek-Lalzar et al.   Nature Communications

Gel-free proteomic analysis of soybean root proteins affected by calcium under flooding stress

(2014) MyeongWon Oh et al.   Frontiers in Plant Science

Regulation of primary plant metabolism during plant-pathogen interactions and its contribution to plant defense

(2014) Clemencia M. Rojas et al.   Frontiers in Plant Science

Changes in alfalfa forage quality and stem carbohydrates induced by arbuscular mycorrhizal fungi and elevated atmospheric CO2

(2013) M. Baslam et al.   ANNALS OF APPLIED BIOLOGY

Transport and Metabolism in Legume-Rhizobia Symbioses

(2013) Michael Udvardi et al.   Annual Review of Plant Biology

Local inhibition of nitrogen fixation and nodule metabolism in drought-stressed soybean

(2013) Erena Gil-Quintana et al.   JOURNAL OF EXPERIMENTAL BOTANY

OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm

(2013) Jie-Chen Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Harvest index, a parameter conditioning responsiveness of wheat plants to elevated CO2

(2013) Iker Aranjuelo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Glutamate signalling in roots

(2013) Brian G. Forde   JOURNAL OF EXPERIMENTAL BOTANY

Local and Systemic Proteomic Changes in Medicago Truncatula at an Early Phase of Sinorhizobium meliloti Infection

(2013) Barbara Molesini et al.   JOURNAL OF PROTEOME RESEARCH

Investigating the Role of Respiration in Plant Salinity Tolerance by Analyzing Mitochondrial Proteomes from Wheat and a Salinity-Tolerant Amphiploid (Wheat × Lophopyrum elongatum)

(2013) Richard P. Jacoby et al.   JOURNAL OF PROTEOME RESEARCH

The wheat chloroplastic proteome

(2013) Abu Hena Mostafa Kamal et al.   Journal of Proteomics

Publishing 13C metabolic flux analysis studies: A review and future perspectives

(2013) Scott B. Crown et al.   METABOLIC ENGINEERING

SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice

(2013) Romy Schmidt et al.   Molecular Plant

mVOC: a database of microbial volatiles

(2013) Marie Chantal Lemfack et al.   NUCLEIC ACIDS RESEARCH

The metabolic flux phenotype of heterotrophic Arabidopsis cells reveals a complex response to changes in nitrogen supply

(2013) Shyam K. Masakapalli et al.   PLANT JOURNAL

Transcriptomic and Metabolic Changes Associated with Photorespiratory Ammonium Accumulation in the Model Legume Lotus japonicus

(2013) C. M. Perez-Delgado et al.   PLANT PHYSIOLOGY

A Guanine Nucleotide Exchange Factor for Rab5 Proteins Is Essential for Intracellular Transport of the Proglutelin from the Golgi Apparatus to the Protein Storage Vacuole in Rice Endosperm

(2013) M. Fukuda et al.   PLANT PHYSIOLOGY

The role of the DNA-binding One Zinc Finger (DOF) transcription factor family in plants

(2013) Mélanie Noguero et al.   PLANT SCIENCE

Bacterial Ammonia Causes Significant Plant Growth Inhibition

(2013) Teresa Weise et al.   PLoS One

An essential role for chloroplast heat shock protein 90 (Hsp90C) in protein import into chloroplasts

(2013) H. Inoue et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coupling mutagenesis and parallel deep sequencing to probe essential residues in a genome or gene

(2013) William P. Robins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Uncovering the Protein Translocon at the Chloroplast Inner Envelope Membrane

(2013) S. Kikuchi et al.   SCIENCE

Transit peptide design and plastid import regulation

(2013) Hsou-min Li et al.   TRENDS IN PLANT SCIENCE

Does Don Fisher's high-pressure manifold model account for phloem transport and resource partitioning?

(2013) John W. Patrick   Frontiers in Plant Science

Elevated CO2 may impair the beneficial effect of arbuscular mycorrhizal fungi on the mineral and phytochemical quality of lettuce

(2012) Marouane Baslam et al.   ANNALS OF APPLIED BIOLOGY

Inferring transcriptional gene regulation network of starch metabolism in Arabidopsis thaliana leaves using graphical Gaussian model

(2012) Papapit Ingkasuwan et al.   BMC Systems Biology

The use of metabolomics to dissect plant responses to abiotic stresses

(2012) Toshihiro Obata et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Volatile Mediated Interactions Between Bacteria and Fungi in the Soil

(2012) Uta Effmert et al.   JOURNAL OF CHEMICAL ECOLOGY

The use of metabolomics integrated with transcriptomic and proteomic studies for identifying key steps involved in the control of nitrogen metabolism in crops such as maize

(2012) Nardjis Amiour et al.   JOURNAL OF EXPERIMENTAL BOTANY

Changes in physiology and protein abundance in salt-stressed wheat chloroplasts

(2012) Abu Hena Mostafa Kamal et al.   MOLECULAR BIOLOGY REPORTS

The Medicago truncatula Sucrose Transporter Family: Characterization and Implication of Key Members in Carbon Partitioning towards Arbuscular Mycorrhizal Fungi

(2012) Joan Doidy et al.   Molecular Plant

The mechanism of phloem loading in rice (Oryza sativa)

(2012) Joon-Seob Eom et al.   MOLECULES AND CELLS

Genome sequencing reveals agronomically important loci in rice using MutMap

(2012) Akira Abe et al.   NATURE BIOTECHNOLOGY

Senescence-associated proteases in plants

(2012) Irma N. Roberts et al.   PHYSIOLOGIA PLANTARUM

Beginning to Understand Autophagy, an Intracellular Self-Degradation System in Plants

(2012) K. Yoshimoto   PLANT AND CELL PHYSIOLOGY

Identification of systemic responses in soybean nodulation by xylem sap feeding and complete transcriptome sequencing reveal a novel component of the autoregulation pathway

(2012) Dugald E. Reid et al.   PLANT BIOTECHNOLOGY JOURNAL

Suppression of α-amylase genes improves quality of rice grain ripened under high temperature

(2012) Makoto Hakata et al.   PLANT BIOTECHNOLOGY JOURNAL

Metabolomics reveals herbivore-induced metabolites of resistance and susceptibility in maize leaves and roots

(2012) GUILLAUME MARTI et al.   PLANT CELL AND ENVIRONMENT

Differential remodeling of the lipidome during cold acclimation in natural accessions ofArabidopsis thaliana

(2012) Thomas Degenkolbe et al.   PLANT JOURNAL

Regulation of AtSUS2 and AtSUS3 by glucose and the transcription factor LEC2 in different tissues and at different stages of Arabidopsis seed development

(2012) Juan Gabriel Angeles-Núñez et al.   PLANT MOLECULAR BIOLOGY

Proteomic Analysis of Chloroplast-to-Chromoplast Transition in Tomato Reveals Metabolic Shifts Coupled with Disrupted Thylakoid Biogenesis Machinery and Elevated Energy-Production Components

(2012) C. Barsan et al.   PLANT PHYSIOLOGY

Autophagy: a multifaceted intracellular system for bulk and selective recycling

(2012) Faqiang Li et al.   TRENDS IN PLANT SCIENCE

Natural leaf senescence: probed by chlorophyll fluorescence, CO2 photosynthetic rate and antioxidant enzyme activities during grain filling in different rice cultivars

(2012) Debabrata Panda et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Excessive nitrogen application decreases grain yield and increases nitrogen loss in a wheat–soil system

(2011) Dong Wang et al.   ACTA AGRICULTURAE SCANDINAVICA SECTION B-SOIL AND PLANT SCIENCE

Arbuscular Mycorrhizal Fungi (AMF) Improved Growth and Nutritional Quality of Greenhouse-Grown Lettuce

(2011) Marouane Baslam et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Photochemical processes, carbon assimilation and RNA accumulation of sucrose transporter genes in tomato arbuscular mycorrhiza

(2011) Katja Boldt et al.   JOURNAL OF PLANT PHYSIOLOGY

Plant Sucrose Transporters from a Biophysical Point of View

(2011) Dietmar Geiger   Molecular Plant

Coordination of Plastid and Light Signaling Pathways upon Development of Arabidopsis Leaves under Various Photoperiods

(2011) Anna Lepistö et al.   Molecular Plant

Microbial Volatile-Induced Accumulation of Exceptionally High Levels of Starch inArabidopsisLeaves Is a Process Involving NTRC and Starch Synthase Classes III and IV

(2011) Jun Li et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Coordinated Gene Networks RegulatingArabidopsisPlant Metabolism in Response to Various Stresses and Nutritional Cues

(2011) Hadar Less et al.   PLANT CELL

Root-to-shoot signalling when soil moisture is heterogeneous: increasing the proportion of root biomass in drying soil inhibits leaf growth and increases leaf abscisic acid concentration

(2011) ANA ISABEL MARTIN-VERTEDOR et al.   PLANT CELL AND ENVIRONMENT

Mutagenesis of cysteine 81 prevents dimerization of the APS1 subunit of ADP-glucose pyrophosphorylase and alters diurnal starch turnover in Arabidopsis thaliana leaves

(2011) Nadja Hädrich et al.   PLANT JOURNAL

Elemental formula annotation of polar and lipophilic metabolites using13C,15N and34S isotope labelling, in combination with high-resolution mass spectrometry

(2011) Patrick Giavalisco et al.   PLANT JOURNAL

Volatiles of two growth-inhibiting rhizobacteria commonly engage AtWRKY18 function

(2011) Katrin Wenke et al.   PLANT JOURNAL

Genetic Architecture of Maize Kernel Composition in the Nested Association Mapping and Inbred Association Panels

(2011) J. P. Cook et al.   PLANT PHYSIOLOGY

ABI4 Activates DGAT1 Expression in Arabidopsis Seedlings during Nitrogen Deficiency

(2011) Y. Yang et al.   PLANT PHYSIOLOGY

Arabidopsis Roots and Shoots Show Distinct Temporal Adaptation Patterns toward Nitrogen Starvation

(2011) A. Krapp et al.   PLANT PHYSIOLOGY

A label-free quantitative shotgun proteomics analysis of rice grain development

(2011) Joohyun Lee et al.   Proteome Science

Reboot the system thanks to protein post-translational modifications and proteome diversity: How quiescent seeds restart their metabolism to prepare seedling establishment

(2011) Erwann Arc et al.   PROTEOMICS

Reciprocal Rewards Stabilize Cooperation in the Mycorrhizal Symbiosis

(2011) E. T. Kiers et al.   SCIENCE

A framework integrating plant growth with hormones and nutrients

(2011) Gabriel Krouk et al.   TRENDS IN PLANT SCIENCE

Comparative proteomics analysis of differentially expressed proteins in soybean cell wall during flooding stress

(2010) Setsuko Komatsu et al.   AMINO ACIDS

Methods in Mammalian Autophagy Research

(2010) Noboru Mizushima et al.   CELL

Regulation of starch metabolism: the age of enlightenment?

(2010) Oliver Kötting et al.   CURRENT OPINION IN PLANT BIOLOGY

Comparative proteomic analysis provides new insights into the regulation of carbon metabolism during leaf senescence of rice grown under field conditions

(2010) Aihong Zhang et al.   JOURNAL OF PLANT PHYSIOLOGY

Arabidopsis thaliana as a model organism for plant proteome research

(2010) Stefanie Wienkoop et al.   Journal of Proteomics

Global Proteomics Reveal an Atypical Strategy for Carbon/Nitrogen Assimilation by a Cyanobacterium Under Diverse Environmental Perturbations

(2010) Kimberly M. Wegener et al.   MOLECULAR & CELLULAR PROTEOMICS

Metabolic and Signaling Aspects Underpinning the Regulation of Plant Carbon Nitrogen Interactions

(2010) Adriano Nunes-Nesi et al.   Molecular Plant

Sugar transporters for intercellular exchange and nutrition of pathogens

(2010) Li-Qing Chen et al.   NATURE

Microbial Volatile Emissions Promote Accumulation of Exceptionally High Levels of Starch in Leaves in Mono- and Dicotyledonous Plants

(2010) Ignacio Ezquer et al.   PLANT AND CELL PHYSIOLOGY

Atlas of Rice Grain Filling-Related Metabolism under High Temperature: Joint Analysis of Metabolome and Transcriptome Demonstrated Inhibition of Starch Accumulation and Induction of Amino Acid Accumulation

(2010) Hiromoto Yamakawa et al.   PLANT AND CELL PHYSIOLOGY

Modulation of sugar metabolism by an INDETERMINATE DOMAIN transcription factor contributes to photoperiodic flowering in Arabidopsis

(2010) Pil Joon Seo et al.   PLANT JOURNAL

The metabolic transition during disease following infection of Arabidopsis thaliana by Pseudomonas syringae pv. tomato

(2010) Jane L. Ward et al.   PLANT JOURNAL

Arabidopsis has a cytosolic fumarase required for the massive allocation of photosynthate into fumaric acid and for rapid plant growth on high nitrogen

(2010) Itsara Pracharoenwattana et al.   PLANT JOURNAL

Coexpression Analysis Identifies Rice Starch Regulator1, a Rice AP2/EREBP Family Transcription Factor, as a Novel Rice Starch Biosynthesis Regulator

(2010) F.-F. Fu et al.   PLANT PHYSIOLOGY

Fine Quantitative Trait Loci Mapping of Carbon and Nitrogen Metabolism Enzyme Activities and Seedling Biomass in the Maize IBM Mapping Population

(2010) N. Zhang et al.   PLANT PHYSIOLOGY

Genetic Analysis of Central Carbon Metabolism Unveils an Amino Acid Substitution That Alters Maize NAD-Dependent Isocitrate Dehydrogenase Activity

(2010) Nengyi Zhang et al.   PLoS One

Phosphoenolpyruvate carboxylase intrinsically located in the chloroplast of rice plays a crucial role in ammonium assimilation

(2010) C. Masumoto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana

(2010) E. A. Vidal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ozone stress-induced proteomic changes in leaf total soluble and chloroplast proteins of soybean reveal that carbon allocation is involved in adaptation in the early developmental stage

(2010) Nagib Ahsan et al.   PROTEOMICS

Carbon Dioxide Enrichment Inhibits Nitrate Assimilation in Wheat and Arabidopsis

(2010) A. J. Bloom et al.   SCIENCE

Mechanisms underlying beneficial plant–fungus interactions in mycorrhizal symbiosis

(2010) Paola Bonfante et al.   Nature Communications

Regulation Mechanisms and Signaling Pathways of Autophagy

(2009) Congcong He et al.   Annual Review of Genetics

Metabolomics for Functional Genomics, Systems Biology, and Biotechnology

(2009) Kazuki Saito et al.   Annual Review of Plant Biology

Evaluation of protein pattern changes in roots and leaves of Zea mays plants in response to nitrate availability by two-dimensional gel electrophoresis analysis

(2009) Bhakti Prinsi et al.   BMC PLANT BIOLOGY

Molecular cloning and characterization of granule bound starch synthase I cDNA from a grain amaranth (Amaranthus cruentus L.)

(2009) Young-Jun Park et al.   BREEDING SCIENCE

Formation of grain chalkiness and changes in water distribution in developing rice caryopses grown under high-temperature stress

(2009) Tsutomu Ishimaru et al.   JOURNAL OF CEREAL SCIENCE

Differential gel electrophoresis (DIGE) to quantitatively monitor early symbiosis- and pathogenesis-induced changes of the Medicago truncatula root proteome

(2009) Leif Schenkluhn et al.   Journal of Proteomics

Metabolomic Screening Applied to Rice FOX Arabidopsis Lines Leads to the Identification of a Gene-Changing Nitrogen Metabolism

(2009) Doris Albinsky et al.   Molecular Plant

The ubiquitin–26S proteasome system at the nexus of plant biology

(2009) Richard D. Vierstra   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Metabolic profiling of maize mutants deficient for two glutamine synthetase isoenzymes using 1H-NMR-based metabolomics

(2009) Caroline Broyart et al.   PHYTOCHEMICAL ANALYSIS

Carbon flow in the rhizosphere: carbon trading at the soil–root interface

(2009) D. L. Jones et al.   PLANT AND SOIL

Transcriptome analysis of nitrogen-efficient rice over-expressing alanine aminotransferase

(2009) Perrin H. Beatty et al.   PLANT BIOTECHNOLOGY JOURNAL

The Rice  -Amylase Glycoprotein Is Targeted from the Golgi Apparatus through the Secretory Pathway to the Plastids

(2009) A. Kitajima et al.   PLANT CELL

STARCH-EXCESS4 Is a Laforin-Like Phosphoglucan Phosphatase Required for Starch Degradation in Arabidopsis thaliana

(2009) O. Kotting et al.   PLANT CELL

The Ethylene Receptor ETR2 Delays Floral Transition and Affects Starch Accumulation in Rice

(2009) H. Wuriyanghan et al.   PLANT CELL

Members of the LBD Family of Transcription Factors Repress Anthocyanin Synthesis and Affect Additional Nitrogen Responses in Arabidopsis

(2009) G. Rubin et al.   PLANT CELL

GDP-d-mannose 3,5-epimerase (GME) plays a key role at the intersection of ascorbate and non-cellulosic cell-wall biosynthesis in tomato

(2009) Louise Gilbert et al.   PLANT JOURNAL

Pleiotropic Modulation of Carbon and Nitrogen Metabolism in Arabidopsis Plants Overexpressing the NAD kinase2 Gene

(2009) H. Takahashi et al.   PLANT PHYSIOLOGY

Large-Scale Phosphoprotein Analysis in Medicago truncatula Roots Provides Insight into in Vivo Kinase Activity in Legumes

(2009) P. A. Grimsrud et al.   PLANT PHYSIOLOGY

Phloem Loading Strategies in Three Plant Species That Transport Sugar Alcohols

(2009) E. J. Reidel et al.   PLANT PHYSIOLOGY

Mitochondrial proteome during salt stress-induced programmed cell death in rice

(2009) Xi Chen et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Altered carbohydrate metabolism in the storage roots of sweetpotato plants overexpressing the SRF1 gene, which encodes a Dof zinc finger transcription factor

(2009) Masaru Tanaka et al.   PLANTA

Impact of clock-associated Arabidopsis pseudo-response regulators in metabolic coordination

(2009) A. Fukushima et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A comprehensive picture of phloem loading strategies

(2009) E. A. Rennie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

NTRC links built-in thioredoxin to light and sucrose in regulating starch synthesis in chloroplasts and amyloplasts

(2009) J. Michalska et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Starch as a major integrator in the regulation of plant growth

(2009) R. Sulpice et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Downregulating the sucrose transporter VpSUT1 in Verbascum phoeniceum does not inhibit phloem loading

(2009) C. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Are the rates of photosynthesis stimulated by the carbon sink strength of rhizobial and arbuscular mycorrhizal symbioses?

(2009) Glaciela Kaschuk et al.   SOIL BIOLOGY & BIOCHEMISTRY

Arginine and nitrogen storage

(2008) José L Llácer et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Integration of Metabolomic and Proteomic Phenotypes

(2008) Stefanie Wienkoop et al.   MOLECULAR & CELLULAR PROTEOMICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Arbuscular mycorrhiza: the mother of plant root endosymbioses

(2008) Martin Parniske   NATURE REVIEWS MICROBIOLOGY

Targeting of nucleus-encoded proteins to chloroplasts in plants

(2008) Paul Jarvis   NEW PHYTOLOGIST

Jasmonic acid influences mycorrhizal colonization in tomato plants by modifying the expression of genes involved in carbohydrate partitioning

(2008) Miriam Tejeda-Sartorius et al.   PHYSIOLOGIA PLANTARUM

Arabidopsis Nuclear-Encoded Plastid Transit Peptides Contain Multiple Sequence Subgroups with Distinctive Chloroplast-Targeting Sequence Motifs

(2008) D. W. Lee et al.   PLANT CELL

 -AMYLASE4, a Noncatalytic Protein Required for Starch Breakdown, Acts Upstream of Three Active  -Amylases in Arabidopsis Chloroplasts

(2008) D. C. Fulton et al.   PLANT CELL

Adjustment of growth and central metabolism to a mild but sustained nitrogen-limitation inArabidopsis

(2008) HENDRIK TSCHOEP et al.   PLANT CELL AND ENVIRONMENT

Soil bacteria augment Arabidopsis photosynthesis by decreasing glucose sensing and abscisic acid levels in planta

(2008) Huiming Zhang et al.   PLANT JOURNAL

Dynamic Proteomic Analysis Reveals a Switch between Central Carbon Metabolism and Alcoholic Fermentation in Rice Filling Grains

(2008) S. B. Xu et al.   PLANT PHYSIOLOGY

Cell-specific nitrogen responses mediate developmental plasticity

(2008) M. L. Gifford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolite profiling of mycorrhizal roots of Medicago truncatula

(2007) Willibald Schliemann et al.   PHYTOCHEMISTRY