Exploring regulatory networks in plants: transcription factors of starch metabolism

The Human Transcription Factors

(2018) Samuel A. Lambert et al.   CELL

Where does Münch flow begin? Sucrose transport in the pre-phloem path

(2018) Fulton E Rockwell et al.   CURRENT OPINION IN PLANT BIOLOGY

Molecular characterization and identification of facilitative glucose transporter 2 (GLUT2) and its expression and of the related glycometabolism enzymes in response to different starch levels in blunt snout bream (Megalobrama amblycephala)

(2018) Hualiang Liang et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Ethylene Responsive Factor MeERF72 Negatively Regulates Sucrose synthase 1 Gene in Cassava

(2018) Chen Liu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Photoperiodic control of the Arabidopsis proteome reveals a translational coincidence mechanism

(2018) Daniel D Seaton et al.   Molecular Systems Biology

Two plastidial coiled-coil proteins are essential for normal starch granule initiation in Arabidopsis

(2018) David Seung et al.   PLANT CELL

Combinatorial interaction of two adjacent cis -active promoter regions mediates the synergistic induction of Bt2 gene by sucrose and ABA in maize endosperm

(2018) Yangping Li et al.   PLANT SCIENCE

Novel transcription factors PvBMY1 and PvBMY3 increase biomass yield in greenhouse-grown switchgrass ( Panicum virgatum L.)

(2018) Madana M.R. Ambavaram et al.   PLANT SCIENCE

Improving biomass and starch accumulation of bioenergy crop duckweed (Landoltia punctata) by abscisic acid application

(2018) Yang Liu et al.   Scientific Reports

The fluorescent blue glow of banana fruits is not due to symplasmic plastidial catabolism but arises from insoluble phenols estherified to the cell wall

(2018) Axel Tiessen   PLANT SCIENCE

Down-regulation of the sucrose transporters HvSUT1 and HvSUT2 affects sucrose homeostasis along its delivery path in barley grains

(2017) Volodymyr Radchuk et al.   JOURNAL OF EXPERIMENTAL BOTANY

The plasma membrane H+-ATPase gene family in Solanum tuberosum L. Role of PHA1 in tuberization

(2017) Margarita Stritzler et al.   JOURNAL OF EXPERIMENTAL BOTANY

Homologs of PROTEIN TARGETING TO STARCH Control Starch Granule Initiation in Arabidopsis Leaves

(2017) David Seung et al.   PLANT CELL

Starch Synthase 4 and Plastidal Phosphorylase Differentially Affect Starch Granule Number and Morphology

(2017) Irina Malinova et al.   PLANT PHYSIOLOGY

Characterization of the functional interactions of plastidial starch phosphorylase and starch branching enzymes from rice endosperm during reserve starch biosynthesis

(2017) Yasunori Nakamura et al.   PLANT SCIENCE

Signaling and Gene Regulatory Networks in Mammalian Lens Development

(2017) Ales Cvekl et al.   TRENDS IN GENETICS

Coexpression analysis identifies nuclear reprogramming barriers of somatic cell nuclear transfer embryos

(2017) Yongchun Zuo et al.   Oncotarget

Photoperiod-dependent changes in the phase of core clock transcripts and global transcriptional outputs at dawn and dusk inArabidopsis

(2016) Anna Flis et al.   PLANT CELL AND ENVIRONMENT

Plant Proteins Are Smaller Because They Are Encoded by Fewer Exons than Animal Proteins

(2016) Obed Ramírez-Sánchez et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Sucrose and ABA regulate starch biosynthesis in maize through a novel transcription factor, ZmEREB156

(2016) Huanhuan Huang et al.   Scientific Reports

REGULATOR: a database of metazoan transcription factors and maternal factors for developmental studies

(2015) Kai Wang et al.   BMC BIOINFORMATICS

Amylopectin biosynthetic enzymes from developing rice seed form enzymatically active protein complexes

(2015) Naoko Crofts et al.   JOURNAL OF EXPERIMENTAL BOTANY

ZmbZIP91 regulates expression of starch synthesis-related genes by binding to ACTCAT elements in their promoters

(2015) Jiang Chen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Temporal kinetics of the transcriptional response to carbon depletion and sucrose readdition inArabidopsisseedlings

(2015) Sarah Jane Cookson et al.   PLANT CELL AND ENVIRONMENT

Transcription Factor Arabidopsis Activating Factor1 Integrates Carbon Starvation Responses with Trehalose Metabolism

(2015) Prashanth Garapati et al.   PLANT PHYSIOLOGY

CO2-Responsive CONSTANS, CONSTANS-Like, and Time of Chlorophylla/bBinding Protein Expression1 Protein Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice

(2015) Ryutaro Morita et al.   PLANT PHYSIOLOGY

Transcriptional coordination and abscisic acid mediated regulation of sucrose transport and sucrose-to-starch metabolism related genes during grain filling in wheat (Triticum aestivum L.)

(2015) Shalini Mukherjee et al.   PLANT SCIENCE

Intracellular and cell-to-apoplast compartmentation of carbohydrate metabolism

(2015) Joerg Fettke et al.   TRENDS IN PLANT SCIENCE

PROTEIN TARGETING TO STARCH Is Required for Localising GRANULE-BOUND STARCH SYNTHASE to Starch Granules and for Normal Amylose Synthesis in Arabidopsis

(2015) David Seung et al.   PLOS BIOLOGY

Plastidic Phosphoglucose Isomerase Is an Important Determinant of Starch Accumulation in Mesophyll Cells, Growth, Photosynthetic Capacity, and Biosynthesis of Plastidic Cytokinins in Arabidopsis

(2015) Abdellatif Bahaji et al.   PLoS One

The Maize TFome - development of a transcription factor open reading frame collection for functional genomics

(2014) Brett Burdo et al.   PLANT JOURNAL

Functions of Multiple Genes Encoding ADP-Glucose Pyrophosphorylase Subunits in Maize Endosperm, Embryo, and Leaf

(2014) B. Huang et al.   PLANT PHYSIOLOGY

Regulatory Properties of ADP Glucose Pyrophosphorylase Are Required for Adjustment of Leaf Starch Synthesis in Different Photoperiods

(2014) S. T. Mugford et al.   PLANT PHYSIOLOGY

Loss of Cytosolic Phosphoglucose Isomerase Affects Carbohydrate Metabolism in Leaves and Is Essential for Fertility of Arabidopsis

(2014) H.-H. Kunz et al.   PLANT PHYSIOLOGY

The Role of cis Regulatory Evolution in Maize Domestication

(2014) Zachary H. Lemmon et al.   PLoS Genetics

The Spatial Organization of Metabolism Within the Plant Cell

(2013) Lee J. Sweetlove et al.   Annual Review of Plant Biology

OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm

(2013) Jie-Chen Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Expression and functional analysis of rice plastidic maltose transporter, OsMEX1

(2013) Nayeon Ryoo et al.   Journal of the Korean Society for Applied Biological Chemistry

Adjustment of carbon fluxes to light conditions regulates the daily turnover of starch in plants: a computational model

(2013) Alexandra Pokhilko et al.   Molecular BioSystems

Arabidopsis Coordinates the Diurnal Regulation of Carbon Allocation and Growth across a Wide Range of Photoperiods

(2013) Ronan Sulpice et al.   Molecular Plant

SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice

(2013) Romy Schmidt et al.   Molecular Plant

Novel role of ZmaNAC36 in co-expression of starch synthetic genes in maize endosperm

(2013) Junjie Zhang et al.   PLANT MOLECULAR BIOLOGY

Increasing the starch content and grain weight of common wheat by overexpression of the cytosolic AGPase large subunit gene

(2013) Guozhang Kang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Transcriptional regulation of the ADP-glucose pyrophosphorylase isoforms in the leaf and the stem under long and short photoperiod in lentil

(2013) Ayse Bengisu Seferoglu et al.   PLANT SCIENCE

The role of the DNA-binding One Zinc Finger (DOF) transcription factor family in plants

(2013) Mélanie Noguero et al.   PLANT SCIENCE

Leaves of the Arabidopsis maltose exporter1 Mutant Exhibit a Metabolic Profile with Features of Cold Acclimation in the Warm

(2013) Sarah J. Purdy et al.   PLoS One

Subcellular compartmentation of sugar signaling: links among carbon cellular status, route of sucrolysis, sink-source allocation, and metabolic partitioning

(2013) Axel Tiessen et al.   Frontiers in Plant Science

Inferring transcriptional gene regulation network of starch metabolism in Arabidopsis thaliana leaves using graphical Gaussian model

(2012) Papapit Ingkasuwan et al.   BMC Systems Biology

Starch turnover: pathways, regulation and role in growth

(2012) Mark Stitt et al.   CURRENT OPINION IN PLANT BIOLOGY

The plastidial glucan, water dikinase (GWD) catalyses multiple phosphotransfer reactions

(2012) Mahdi Hejazi et al.   FEBS Journal

Regulation of AtSUS2 and AtSUS3 by glucose and the transcription factor LEC2 in different tissues and at different stages of Arabidopsis seed development

(2012) Juan Gabriel Angeles-Núñez et al.   PLANT MOLECULAR BIOLOGY

Starch in the Arabidopsis plant

(2012) Alison M. Smith   STARCH-STARKE

Genome-Wide Transcriptional Analysis of Yield and Heterosis-Associated Genes in Maize (Zea mays L.)

(2012) Ti-fu ZHANG et al.   Journal of Integrative Agriculture

Subcellular analysis of starch metabolism in developing barley seeds using a non-aqueous fractionation method

(2011) Axel Tiessen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Regulation of expression of starch synthesis genes by ethylene and ABA in relation to the development of rice inferior and superior spikelets

(2011) Guohui Zhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Microbial Volatile-Induced Accumulation of Exceptionally High Levels of Starch inArabidopsisLeaves Is a Process Involving NTRC and Starch Synthase Classes III and IV

(2011) Jun Li et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The sucrose-regulated Arabidopsis transcription factor bZIP11 reprograms metabolism and regulates trehalose metabolism

(2011) Jingkun Ma et al.   NEW PHYTOLOGIST

Enhancing the expression of starch synthase class IV results in increased levels of both transitory and long-term storage starch

(2011) Francisco M. Gámez-Arjona et al.   PLANT BIOTECHNOLOGY JOURNAL

Regulation of Starch Biosynthesis in Response to a Fluctuating Environment

(2011) P. Geigenberger   PLANT PHYSIOLOGY

Overexpression of transcription factor ZmPTF1 improves low phosphate tolerance of maize by regulating carbon metabolism and root growth

(2011) Zhaoxia Li et al.   PLANTA

Starch and the clock: the dark side of plant productivity

(2011) Alexander Graf et al.   TRENDS IN PLANT SCIENCE

Progress in Arabidopsis starch research and potential biotechnological applications

(2010) Diana Santelia et al.   CURRENT OPINION IN BIOTECHNOLOGY

Regulation of starch metabolism: the age of enlightenment?

(2010) Oliver Kötting et al.   CURRENT OPINION IN PLANT BIOLOGY

A Novel FactorFLOURY ENDOSPERM2Is Involved in Regulation of Rice Grain Size and Starch Quality

(2010) Kao-Chih She et al.   PLANT CELL

Modulation of sugar metabolism by an INDETERMINATE DOMAIN transcription factor contributes to photoperiodic flowering in Arabidopsis

(2010) Pil Joon Seo et al.   PLANT JOURNAL

Coexpression Analysis Identifies Rice Starch Regulator1, a Rice AP2/EREBP Family Transcription Factor, as a Novel Rice Starch Biosynthesis Regulator

(2010) F.-F. Fu et al.   PLANT PHYSIOLOGY

Over-expression of AGPase genes enhances seed weight and starch content in transgenic maize

(2010) Ning Li et al.   PLANTA

A decade of improvements in quantification of gene expression and internal standard selection

(2009) Olivier Thellin et al.   BIOTECHNOLOGY ADVANCES

The evolution of the starch biosynthetic pathway in cereals and other grasses

(2009) S. Comparot-Moss et al.   JOURNAL OF EXPERIMENTAL BOTANY

A census of human transcription factors: function, expression and evolution

(2009) Juan M. Vaquerizas et al.   NATURE REVIEWS GENETICS

The Ethylene Receptor ETR2 Delays Floral Transition and Affects Starch Accumulation in Rice

(2009) H. Wuriyanghan et al.   PLANT CELL

Starch Synthesis in Arabidopsis Is Achieved by Spatial Cotranscription of Core Starch Metabolism Genes

(2009) H.-L. Tsai et al.   PLANT PHYSIOLOGY

Proteins from Multiple Metabolic Pathways Associate with Starch Biosynthetic Enzymes in High Molecular Weight Complexes: A Model for Regulation of Carbon Allocation in Maize Amyloplasts

(2009) T. A. Hennen-Bierwagen et al.   PLANT PHYSIOLOGY

Altered carbohydrate metabolism in the storage roots of sweetpotato plants overexpressing the SRF1 gene, which encodes a Dof zinc finger transcription factor

(2009) Masaru Tanaka et al.   PLANTA

NTRC links built-in thioredoxin to light and sucrose in regulating starch synthesis in chloroplasts and amyloplasts

(2009) J. Michalska et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Starch as a major integrator in the regulation of plant growth

(2009) R. Sulpice et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cloning, characterisation and comparative analysis of a starch synthase IV gene in wheat: functional and evolutionary implications

(2008) Marina Leterrier et al.   BMC PLANT BIOLOGY

Mutation of the Plastidial  -Glucan Phosphorylase Gene in Rice Affects the Synthesis and Structure of Starch in the Endosperm

(2008) H. Satoh et al.   PLANT CELL

Comprehensive Flavonol Profiling and Transcriptome Coexpression Analysis Leading to Decoding Gene-Metabolite Correlations in Arabidopsis

(2008) K. Yonekura-Sakakibara et al.   PLANT CELL

Prospects for increasing starch and sucrose yields for bioethanol production

(2008) Alison M. Smith   PLANT JOURNAL

GRASSIUS: A Platform for Comparative Regulatory Genomics across the Grasses

(2008) A. Yilmaz et al.   PLANT PHYSIOLOGY

The gene encoding starch synthase IIc exists in maize and wheat

(2008) Hongbo Yan et al.   PLANT SCIENCE