Elemental formula annotation of polar and lipophilic metabolites using13C,15N and34S isotope labelling, in combination with high-resolution mass spectrometry

A Topological Map of the Compartmentalized Arabidopsis thaliana Leaf Metabolome

(2011) Stephan Krueger et al.   PLoS One

Metabolomic Analysis via Reversed-Phase Ion-Pairing Liquid Chromatography Coupled to a Stand Alone Orbitrap Mass Spectrometer

(2010) Wenyun Lu et al.   ANALYTICAL CHEMISTRY

Correction of mass calibration gaps in liquid chromatography–mass spectrometry metabolomics data

(2010) H. Paul Benton et al.   BIOINFORMATICS

MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

(2010) Tomáš Pluskal et al.   BMC BIOINFORMATICS

Hydrophilic interaction chromatography coupled to MS for metabonomic/metabolomic studies

(2010) Konstantina Spagou et al.   JOURNAL OF SEPARATION SCIENCE

Involvement of AtNAP1 in the regulation of chlorophyll degradation in Arabidopsis thaliana

(2010) Tomohiro Nagane et al.   PLANTA

MetAlign: Interface-Driven, Versatile Metabolomics Tool for Hyphenated Full-Scan Mass Spectrometry Data Preprocessing

(2009) Arjen Lommen   ANALYTICAL CHEMISTRY

13C Isotope-Labeled Metabolomes Allowing for Improved Compound Annotation and Relative Quantification in Liquid Chromatography-Mass Spectrometry-based Metabolomic Research

(2009) Patrick Giavalisco et al.   ANALYTICAL CHEMISTRY

Metabolomics for Functional Genomics, Systems Biology, and Biotechnology

(2009) Kazuki Saito et al.   Annual Review of Plant Biology

Plant PA signaling via diacylglycerol kinase

(2009) Steven A. Arisz et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS

Mass spectrometry: from proteomics to metabolomics and lipidomics

(2009) William J. Griffiths et al.   CHEMICAL SOCIETY REVIEWS

Metabolic systems biology

(2009) Bernhard Palsson   FEBS LETTERS

PubChem: a public information system for analyzing bioactivities of small molecules

(2009) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

An introduction to liquid chromatography–mass spectrometry instrumentation applied in plant metabolomic analyses

(2009) J. William Allwood et al.   PHYTOCHEMICAL ANALYSIS

Sample preparation for plant metabolomics

(2009) Hye Kyong Kim et al.   PHYTOCHEMICAL ANALYSIS

Metabolomics-oriented isolation and structure elucidation of 37 compounds including two anthocyanins from Arabidopsis thaliana

(2009) Ryo Nakabayashi et al.   PHYTOCHEMISTRY

Web-based resources for mass-spectrometry-based metabolomics: A user’s guide

(2009) Takayuki Tohge et al.   PHYTOCHEMISTRY

Pheophytin Pheophorbide Hydrolase (Pheophytinase) Is Involved in Chlorophyll Breakdown during Leaf Senescence in Arabidopsis

(2009) S. Schelbert et al.   PLANT CELL

Use of reverse-phase liquid chromatography, linked to tandem mass spectrometry, to profile the Calvin cycle and other metabolic intermediates in Arabidopsis rosettes at different carbon dioxide concentrations

(2009) Stéphanie Arrivault et al.   PLANT JOURNAL

Assessment of Metabolome Annotation Quality: A Method for Evaluating the False Discovery Rate of Elemental Composition Searches

(2009) Fumio Matsuda et al.   PLoS One

High-Resolution Direct Infusion-Based Mass Spectrometry in Combination with Whole13C Metabolome Isotope Labeling Allows Unambiguous Assignment of Chemical Sum Formulas

(2008) Patrick Giavalisco et al.   ANALYTICAL CHEMISTRY

Metabonomics in cancer diagnosis: mass spectrometry-based profiling of urinary nucleosides from breast cancer patients

(2008) Antje Frickenschmidt et al.   BIOMARKERS

Spatial and Temporal Dynamics of Jasmonate Synthesis and Accumulation inArabidopsisin Response to Wounding

(2008) Gaetan Glauser et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

LC–MS metabolic profiling of Arabidopsis thaliana plant leaves and cell cultures: Optimization of pre-LC–MS procedure parameters

(2008) Ruben t’Kindt et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Lipid extraction by methyl-tert-butyl ether for high-throughput lipidomics

(2008) Vitali Matyash et al.   JOURNAL OF LIPID RESEARCH

Comprehensive Flavonol Profiling and Transcriptome Coexpression Analysis Leading to Decoding Gene-Metabolite Correlations in Arabidopsis

(2008) K. Yonekura-Sakakibara et al.   PLANT CELL

MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites

(2008) Fumio Matsuda et al.   PLANT JOURNAL

Metabolome Analysis of Biosynthetic Mutants Reveals a Diversity of Metabolic Changes and Allows Identification of a Large Number of New Compounds in Arabidopsis

(2008) C. Bottcher et al.   PLANT PHYSIOLOGY

The very-long-chain hydroxy fatty acyl-CoA dehydratase PASTICCINO2 is essential and limiting for plant development

(2008) L. Bach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA