Use of transcriptomics and co-expression networks to analyze the interconnections between nitrogen assimilation and photorespiratory metabolism

Organizer-Derived WOX5 Signal Maintains Root Columella Stem Cells through Chromatin-Mediated Repression of CDF4 Expression

(2015) Limin Pi et al.   DEVELOPMENTAL CELL

Ribonuclease J is required for chloroplast and embryo development in Arabidopsis

(2015) Hongyu Chen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Reassimilation of Photorespiratory Ammonium in Lotus japonicus Plants Deficient in Plastidic Glutamine Synthetase

(2015) Carmen M. Pérez-Delgado et al.   PLoS One

Modulation of phenolic metabolism under stress conditions in a Lotus japonicus mutant lacking plastidic glutamine synthetase

(2015) Margarita García-Calderón et al.   Frontiers in Plant Science

Reassimilation of ammonium in Lotus japonicus

(2014) M. Betti et al.   JOURNAL OF EXPERIMENTAL BOTANY

Photorespiration and nitrate assimilation: a major intersection between plant carbon and nitrogen

(2014) Arnold J. Bloom   PHOTOSYNTHESIS RESEARCH

A plant-specificHUA2-LIKE(HULK) gene family inArabidopsis thalianais essential for development

(2014) Sathya S. Jali et al.   PLANT JOURNAL

Systems approach identifies TGA1 and TGA4 transcription factors as important regulatory components of the nitrate response ofArabidopsis thalianaroots

(2014) José M. Alvarez et al.   PLANT JOURNAL

Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light

(2014) Y. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Systems analysis of transcriptome data provides new hypotheses about Arabidopsis root response to nitrate treatments

(2014) Javier Canales et al.   Frontiers in Plant Science

Do plants need nitrate? The mechanisms by which nitrogen form affects plants

(2013) M. Andrews et al.   ANNALS OF APPLIED BIOLOGY

ATML1 promotes epidermal cell differentiation in Arabidopsis shoots

(2013) S. Takada et al.   DEVELOPMENT

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

(2013) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

Transcriptomic and Metabolic Changes Associated with Photorespiratory Ammonium Accumulation in the Model Legume Lotus japonicus

(2013) C. M. Perez-Delgado et al.   PLANT PHYSIOLOGY

ROOT HAIR DEFECTIVE3 Family of Dynamin-Like GTPases Mediates Homotypic Endoplasmic Reticulum Fusion and Is Essential for Arabidopsis Development

(2013) M. Zhang et al.   PLANT PHYSIOLOGY

Glutamine Synthetase in Legumes: Recent Advances in Enzyme Structure and Functional Genomics

(2012) Marco Betti et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Topological analysis and interactive visualization of biological networks and protein structures

(2012) Nadezhda T Doncheva et al.   Nature Protocols

Flavonoids: biosynthesis, biological functions, and biotechnological applications

(2012) María L. Falcone Ferreyra et al.   Frontiers in Plant Science

Cellular Stress Following Water Deprivation in the Model Legume Lotus japonicus

(2012) Marco Betti et al.   Cells

Photorespiratory Metabolism and Nodule Function: Behavior of Lotus japonicus Mutants Deficient in Plastid Glutamine Synthetase

(2011) Margarita García-Calderón et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

TheArabidopsisNAC Transcription Factor VNI2 Integrates Abscisic Acid Signals into Leaf Senescence via theCOR/RDGenes

(2011) So-Dam Yang et al.   PLANT CELL

Arabidopsis RUGOSA2 encodes an mTERF family member required for mitochondrion, chloroplast and leaf development

(2011) Víctor Quesada et al.   PLANT JOURNAL

Comparative Functional Genomics of Salt Stress in Related Model and Cultivated Plants Identifies and Overcomes Limitations to Translational Genomics

(2011) Diego H. Sanchez et al.   PLoS One

Polycomb group proteins are required to couple seed coat initiation to fertilization

(2011) P. Roszak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Alleviation of low temperature sweetening in potato by expressing Arabidopsis pyruvate decarboxylase gene and stress-inducible rd29A: A preliminary study

(2011) Reena Pinhero et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Nitrogen uptake, assimilation and remobilization in plants: challenges for sustainable and productive agriculture

(2010) Céline Masclaux-Daubresse et al.   ANNALS OF BOTANY

Expander: from expression microarrays to networks and functions

(2010) Igor Ulitsky et al.   Nature Protocols

Deficiency in plastidic glutamine synthetase alters proline metabolism and transcriptomic response in Lotus japonicus under drought stress

(2010) Pedro Díaz et al.   NEW PHYTOLOGIST

Jumonji domain protein JMJD5 functions in both the plant and human circadian systems

(2010) M. A. Jones et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Photorespiration: players, partners and origin

(2010) Hermann Bauwe et al.   TRENDS IN PLANT SCIENCE

Gene networks for nitrogen sensing, signaling, and response in Arabidopsis thaliana

(2010) Elena A. Vidal et al.   Wiley Interdisciplinary Reviews-Systems Biology and Medicine

Photorespiratory Metabolism: Genes, Mutants, Energetics, and Redox Signaling

(2009) Christine H. Foyer et al.   Annual Review of Plant Biology

Dissection of Symbiosis and Organ Development by Integrated Transcriptome Analysis of Lotus japonicus Mutant and Wild-Type Plants

(2009) Niels Høgslund et al.   PLoS One

How relevant are flavonoids as antioxidants in plants?

(2009) Iker Hernández et al.   TRENDS IN PLANT SCIENCE

A Small Subfamily ofArabidopsis RADIALIS-LIKE SANT/MYBGenes: A Link to HOOKLESS1-Mediated Signal Transduction during Early Morphogenesis

(2008) Aya HAMAGUCHI et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

LZF1, a HY5-regulated transcriptional factor, functions in Arabidopsis de-etiolation

(2008) Chiung-swey Joanne Chang et al.   PLANT JOURNAL

Systemic Signaling of the Plant Nitrogen Status Triggers Specific Transcriptome Responses Depending on the Nitrogen Source in Medicago truncatula

(2008) S. Ruffel et al.   PLANT PHYSIOLOGY