Integrated analysis of rice transcriptomic and metabolomic responses to elevated night temperatures identifies sensitivity- and tolerance-related profiles

Molecular cloning and identification of a flavanone 3-hydroxylase gene from Lycium chinense, and its overexpression enhances drought stress in tobacco

(2016) Xinyu Song et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Linking Metabolism to Membrane Signaling: The GABA–Malate Connection

(2016) Matthew Gilliham et al.   TRENDS IN PLANT SCIENCE

Integrated metabolomics and phytochemical genomics approaches for studies on rice

(2016) Yozo Okazaki et al.   GigaScience

Transcriptome changes in rice (Oryza sativa L.) in response to high night temperature stress at the early milky stage

(2015) Jiang-Lin Liao et al.   BMC GENOMICS

RNA-seq reveals differentially expressed genes of rice (Oryza sativa) spikelet in response to temperature interacting with nitrogen at meiosis stage

(2015) Jun Yang et al.   BMC GENOMICS

Effects ofPHENYLALANINE AMMONIA LYASE(PAL) knockdown on cell wall composition, biomass digestibility, and biotic and abiotic stress responses inBrachypodium

(2015) Cynthia L. Cass et al.   JOURNAL OF EXPERIMENTAL BOTANY

High night temperature strongly impacts TCA cycle, amino acid and polyamine biosynthetic pathways in rice in a sensitivity-dependent manner

(2015) Ulrike Glaubitz et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification and characterization of TIFY family genes in Brachypodium distachyon

(2015) Lihua Zhang et al.   JOURNAL OF PLANT RESEARCH

Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress

(2015) Xia Li et al.   PLANT CELL AND ENVIRONMENT

Overexpression of a tomato flavanone 3-hydroxylase-like protein gene improves chilling tolerance in tobacco

(2015) Chen Meng et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

GABA signalling modulates plant growth by directly regulating the activity of plant-specific anion transporters

(2015) Sunita A. Ramesh et al.   Nature Communications

MarVis-Pathway: integrative and exploratory pathway analysis of non-targeted metabolomics data

(2014) Alexander Kaever et al.   Metabolomics

Rice responses to rising temperatures - challenges, perspectives and future directions

(2014) S. V. K. JAGADISH et al.   PLANT CELL AND ENVIRONMENT

Integrated Analysis of the Effects of Cold and Dehydration on Rice Metabolites, Phytohormones, and Gene Transcripts

(2014) K. Maruyama et al.   PLANT PHYSIOLOGY

Possible roles of basic helix-loop-helix transcription factors in adaptation to drought

(2014) Graciela Castilhos et al.   PLANT SCIENCE

Comparative Metabolite Profiling of Two Rice Genotypes with Contrasting Salt Stress Tolerance at the Seedling Stage

(2014) Xiuqin Zhao et al.   PLoS One

Differential physiological responses of different rice (Oryza sativa) cultivars to elevated night temperature during vegetative growth

(2013) Ulrike Glaubitz et al.   FUNCTIONAL PLANT BIOLOGY

Spatio-Temporal Transcript Profiling of Rice Roots and Shoots in Response to Phosphate Starvation and Recovery

(2013) D. Secco et al.   PLANT CELL

Stress-Induced Cytokinin Synthesis Increases Drought Tolerance through the Coordinated Regulation of Carbon and Nitrogen Assimilation in Rice

(2013) M. Reguera et al.   PLANT PHYSIOLOGY

Identification of Drought Tolerance Markers in a Diverse Population of Rice Cultivars by Expression and Metabolite Profiling

(2013) Thomas Degenkolbe et al.   PLoS One

Rice suspension cultured cells are evaluated as a model system to study salt responsive networks in plants using a combined proteomic and metabolomic profiling approach

(2013) Dawei Liu et al.   PROTEOMICS

Overexpression of a Rice TIFY Gene Increases Grain Size through Enhanced Accumulation of Carbohydrates in the Stem

(2012) Makoto HAKATA et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

The use of metabolomics to dissect plant responses to abiotic stresses

(2012) Toshihiro Obata et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Drought, salt, and temperature stress-induced metabolic rearrangements and regulatory networks

(2012) J. Krasensky et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparison of GC-MS and NMR for Metabolite Profiling of Rice Subjected to Submergence Stress

(2012) Gregory A. Barding et al.   JOURNAL OF PROTEOME RESEARCH

Metabolomics in Agriculture

(2012) K.D. Nadella et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Differential Metabolic Regulation Governed by the Rice SUB1A Gene during Submergence Stress and Identification of Alanylglycine by 1H NMR Spectroscopy

(2011) Gregory A. Barding et al.   JOURNAL OF PROTEOME RESEARCH

Comparative analysis between plant species of transcriptional and metabolic responses to hypoxia

(2011) Reena Narsai et al.   NEW PHYTOLOGIST

The cellular language of myo-inositol signaling

(2011) Glenda E. Gillaspy   NEW PHYTOLOGIST

Corn hybrids display lower metabolite variability and complex metabolite inheritance patterns

(2011) Jan Lisec et al.   PLANT JOURNAL

Genetic, proteomic and metabolic analysis of the regulation of energy storage in rice seedlings in response to drought

(2011) Liebo Shu et al.   PROTEOMICS

‘Omics’ analyses of regulatory networks in plant abiotic stress responses

(2010) Kaoru Urano et al.   CURRENT OPINION IN PLANT BIOLOGY

Effects of Night Temperature, Spikelet Position and Salicylic Acid on Yield and Yield-Related Parameters of Rice (Oryza sativa L.) Plants

(2010) A. R. Mohammed et al.   JOURNAL OF AGRONOMY AND CROP SCIENCE

Jasmonate perception by inositol-phosphate-potentiated COI1–JAZ co-receptor

(2010) Laura B. Sheard et al.   NATURE

Atlas of Rice Grain Filling-Related Metabolism under High Temperature: Joint Analysis of Metabolome and Transcriptome Demonstrated Inhibition of Starch Accumulation and Induction of Amino Acid Accumulation

(2010) H. Yamakawa et al.   PLANT AND CELL PHYSIOLOGY

Overexpression of a homopeptide repeat-containing bHLH protein gene (OrbHLH001) from Dongxiang Wild Rice confers freezing and salt tolerance in transgenic Arabidopsis

(2010) Fei Li et al.   PLANT CELL REPORTS

Functional Analysis of the Arabidopsis PAL Gene Family in Plant Growth, Development, and Response to Environmental Stress

(2010) J. Huang et al.   PLANT PHYSIOLOGY

Salt stress differentially affects growth-mediating β-expansins in resistant and sensitive maize (Zea mays L.)

(2010) Christoph-Martin Geilfus et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

The CBFs: Three arabidopsis transcription factors to cold acclimate

(2010) Joaquín Medina et al.   PLANT SCIENCE

Polyamines: molecules with regulatory functions in plant abiotic stress tolerance

(2010) Rubén Alcázar et al.   PLANTA

NMR Techniques Coupled with Multivariate Statistical Analysis: Tools to AnalyseOryza sativaMetabolic Content under Stress Conditions

(2009) E. Fumagalli et al.   JOURNAL OF AGRONOMY AND CROP SCIENCE

Metabolome Analysis of Response to Oxidative Stress in Rice Suspension Cells Overexpressing Cell Death Suppressor Bax Inhibitor-1

(2009) Toshiki Ishikawa et al.   PLANT AND CELL PHYSIOLOGY

Heat stress activates phospholipase D and triggers PIP2accumulation at the plasma membrane and nucleus

(2009) Michael Mishkind et al.   PLANT JOURNAL

High night temperature stimulates photosynthesis, biomass production and growth during the vegetative stage of rice plants

(2009) Keiichi Kanno et al.   SOIL SCIENCE AND PLANT NUTRITION

Transplastomic expression of bacterial l-aspartate-α-decarboxylase enhances photosynthesis and biomass production in response to high temperature stress

(2009) W. M. Fouad et al.   TRANSGENIC RESEARCH

Metabolite-based clustering and visualization of mass spectrometry data using one-dimensional self-organizing maps

(2008) Peter Meinicke et al.   Algorithms for Molecular Biology

Integrated Transcriptomics, Proteomics, and Metabolomics Analyses To Survey Ozone Responses in the Leaves of Rice Seedling

(2008) Kyoungwon Cho et al.   JOURNAL OF PROTEOME RESEARCH

Comparative genomic and physiological analysis of nutrient response to NH4+, NH4+:NO3− and NO3− in barley seedlings

(2008) Marta S. Lopes et al.   PHYSIOLOGIA PLANTARUM

Arabidopsis DMR6 encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew

(2008) Mireille van Damme et al.   PLANT JOURNAL

Expression profiling of rice cultivars differing in their tolerance to long-term drought stress

(2008) Thomas Degenkolbe et al.   PLANT MOLECULAR BIOLOGY

Metabolomics-assisted breeding: a viable option for crop improvement?

(2008) Alisdair R. Fernie et al.   TRENDS IN GENETICS

Rice Metabolomics

(2008) Akira Oikawa et al.   Rice

Highway or byway: the metabolic role of the GABA shunt in plants

(2007) Aaron Fait et al.   TRENDS IN PLANT SCIENCE