Genome-scale metabolic reconstruction of the symbiosis between a leguminous plant and a nitrogen-fixing bacterium
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Title
Genome-scale metabolic reconstruction of the symbiosis between a leguminous plant and a nitrogen-fixing bacterium
Authors
Keywords
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Journal
Nature Communications
Volume 11, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-05-22
DOI
10.1038/s41467-020-16484-2
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Related references
Note: Only part of the references are listed.- MEMOTE for standardized genome-scale metabolic model testing
- (2020) Christian Lieven et al. NATURE BIOTECHNOLOGY
- Global plant–symbiont organization and emergence of biogeochemical cycles resolved by evolution-based trait modelling
- (2019) Mingzhen Lu et al. Nature Ecology & Evolution
- A synthetic ecosystem for the multi-level modelling of heterotroph-phototroph metabolic interactions
- (2019) Marco Fondi et al. ECOLOGICAL MODELLING
- Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease
- (2019) Almut Heinken et al. Microbiome
- A Genome-Scale Metabolic Model of Soybean (Glycine max) Highlights Metabolic Fluxes in Seedlings
- (2019) Thiago Batista Moreira et al. PLANT PHYSIOLOGY
- Modeling trophic dependencies and exchanges among insects’ bacterial symbionts in a host-simulated environment
- (2018) Itai Opatovsky et al. BMC GENOMICS
- Robustness encoded across essential and accessory replicons of the ecologically versatile bacterium Sinorhizobium meliloti
- (2018) George C. diCenzo et al. PLoS Genetics
- The Symbiosome: Legume and Rhizobia Co-evolution toward a Nitrogen-Fixing Organelle?
- (2018) Teodoro Coba de la Peña et al. Frontiers in Plant Science
- From Network Analysis to Functional Metabolic Modeling of the Human Gut Microbiota
- (2018) Eugen Bauer et al. mSystems
- The intertwined metabolism during symbiotic nitrogen fixation elucidated by metabolic modelling
- (2018) Thomas Pfau et al. Scientific Reports
- Symbiotic performance of Sinorhizobium meliloti lacking ppGpp depends on the Medicago host species
- (2018) Kathrin Wippel et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Tn-Core: A Toolbox for Integrating Tn-seq Gene Essentiality Data and Constraint-Based Metabolic Modeling
- (2018) George C. diCenzo et al. ACS Synthetic Biology
- Interaction and Regulation of Carbon, Nitrogen, and Phosphorus Metabolisms in Root Nodules of Legumes
- (2018) Ailin Liu et al. Frontiers in Plant Science
- Construction and simulation of the Bradyrhizobium diazoefficiens USDA110 metabolic network: a comparison between free-living and symbiotic states
- (2017) Yi Yang et al. Molecular BioSystems
- Heterologous Complementation Reveals a Specialized Activity for BacA in the Medicago–Sinorhizobium meliloti Symbiosis
- (2017) George C. diCenzo et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Trade, Diplomacy, and Warfare: The Quest for Elite Rhizobia Inoculant Strains
- (2017) Alice Checcucci et al. Frontiers in Microbiology
- Perspectives and Challenges in Microbial Communities Metabolic Modeling
- (2017) Emanuele Bosi et al. Frontiers in Genetics
- Host–Microbiota Mutualism in Metabolic Diseases
- (2017) Salvatore Fabbiano et al. Frontiers in Endocrinology
- Symbiotic Nitrogen Fixation and the Challenges to Its Extension to Nonlegumes
- (2016) Florence Mus et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- A putative 3-hydroxyisobutyryl-CoA hydrolase is required for efficient symbiotic nitrogen fixation inSinorhizobium melilotiandSinorhizobium frediiNGR234
- (2016) Maryam Zamani et al. ENVIRONMENTAL MICROBIOLOGY
- Metabolic modelling reveals the specialization of secondary replicons for niche adaptation in Sinorhizobium meliloti
- (2016) George C. diCenzo et al. Nature Communications
- Mixed Nodule Infection in Sinorhizobium meliloti–Medicago sativa Symbiosis Suggest the Presence of Cheating Behavior
- (2016) Alice Checcucci et al. Frontiers in Plant Science
- Getting the Hologenome Concept Right: an Eco-Evolutionary Framework for Hosts and Their Microbiomes
- (2016) Kevin R. Theis et al. mSystems
- Proline auxotrophy in Sinorhizobium meliloti results in a plant-specific symbiotic phenotype
- (2015) George C. diCenzo et al. MICROBIOLOGY-SGM
- The importance of the microbiome of the plant holobiont
- (2015) Philippe Vandenkoornhuyse et al. NEW PHYTOLOGIST
- Phytoplankton–bacterial interactions mediate micronutrient colimitation at the coastal Antarctic sea ice edge
- (2015) Erin M. Bertrand et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Key roles of microsymbiont amino acid metabolism in rhizobia-legume interactions
- (2014) Michael Frederick Dunn CRITICAL REVIEWS IN MICROBIOLOGY
- Synthetic biology approaches to engineering the nitrogen symbiosis in cereals
- (2014) C. Rogers et al. JOURNAL OF EXPERIMENTAL BOTANY
- An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser-capture microdissection coupled to RNA sequencing
- (2014) Brice Roux et al. PLANT JOURNAL
- Global metaanalysis of the nonlinear response of soil nitrous oxide (N2O) emissions to fertilizer nitrogen
- (2014) I. Shcherbak et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Fast Reconstruction of Compact Context-Specific Metabolic Network Models
- (2014) Nikos Vlassis et al. PLoS Computational Biology
- Examination of Prokaryotic Multipartite Genome Evolution through Experimental Genome Reduction
- (2014) George C. diCenzo et al. PLoS Genetics
- Why model?
- (2014) Olaf Wolkenhauer Frontiers in Physiology
- Transport and Metabolism in Legume-Rhizobia Symbioses
- (2013) Michael Udvardi et al. Annual Review of Plant Biology
- The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism
- (2013) Gijs den Besten et al. JOURNAL OF LIPID RESEARCH
- Interactions between Diatoms and Bacteria
- (2012) S. A. Amin et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- In Silico Insights into the Symbiotic Nitrogen Fixation in Sinorhizobium meliloti via Metabolic Reconstruction
- (2012) Hansheng Zhao et al. PLoS One
- Functional Modules, Structural Topology, and Optimal Activity in Metabolic Networks
- (2012) Osbaldo Resendis-Antonio et al. PLoS Computational Biology
- Molecular mechanisms controlling legume autoregulation of nodulation
- (2011) Dugald E. Reid et al. ANNALS OF BOTANY
- Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti
- (2011) Marco Galardini et al. BMC GENOMICS
- TIGER: Toolbox for integrating genome-scale metabolic models, expression data, and transcriptional regulatory networks
- (2011) Paul A Jensen et al. BMC Systems Biology
- Systems biology of bacterial nitrogen fixation: High-throughput technology and its integrative description with constraint-based modeling
- (2011) Osbaldo Resendis-Antonio et al. BMC Systems Biology
- Life Histories of Symbiotic Rhizobia and Mycorrhizal Fungi
- (2011) R. Ford Denison et al. CURRENT BIOLOGY
- The Medicago genome provides insight into the evolution of rhizobial symbioses
- (2011) Nevin D. Young et al. NATURE
- Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0
- (2011) Jan Schellenberger et al. Nature Protocols
- Roles of Arbuscular Mycorrhizas in Plant Phosphorus Nutrition: Interactions between Pathways of Phosphorus Uptake in Arbuscular Mycorrhizal Roots Have Important Implications for Understanding and Manipulating Plant Phosphorus Acquisition
- (2011) S. E. Smith et al. PLANT PHYSIOLOGY
- Sinorhizobium melilotiRequires a Cobalamin-Dependent Ribonucleotide Reductase for Symbiosis With Its Plant Host
- (2010) Michiko E. Taga et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- What is flux balance analysis?
- (2010) Jeffrey D Orth et al. NATURE BIOTECHNOLOGY
- Metabolic Capacity of Sinorhizobium (Ensifer) meliloti Strains as Determined by Phenotype MicroArray Analysis
- (2009) E. G. Biondi et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Host plant genome overcomes the lack of a bacterial gene for symbiotic nitrogen fixation
- (2009) Tsuneo Hakoyama et al. NATURE
- Convergent evolution of metabolic roles in bacterial co-symbionts of insects
- (2009) J. P. McCutcheon et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Molecular Determinants of a Symbiotic Chronic Infection
- (2008) Katherine E. Gibson et al. Annual Review of Genetics
- LibSBML: an API Library for SBML
- (2008) B. J. Bornstein et al. BIOINFORMATICS
- Auxotrophy Accounts for Nodulation Defect of MostSinorhizobium melilotiMutants in the Branched-Chain Amino Acid Biosynthesis Pathway
- (2008) Maria de las Nieves Peltzer et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- How a century of ammonia synthesis changed the world
- (2008) Jan Willem Erisman et al. Nature Geoscience
- Learning how to live together: genomic insights into prokaryote–animal symbioses
- (2008) Andrés Moya et al. NATURE REVIEWS GENETICS
- Reconstruction of biochemical networks in microorganisms
- (2008) Adam M. Feist et al. NATURE REVIEWS MICROBIOLOGY
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