The Chemistry of Plant–Microbe Interactions in the Rhizosphere and the Potential for Metabolomics to Reveal Signaling Related to Defense Priming and Induced Systemic Resistance

Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?

(2018) Joelle Sasse et al.   TRENDS IN PLANT SCIENCE

Small molecules below-ground: the role of specialized metabolites in the rhizosphere

(2017) Hassan Massalha et al.   PLANT JOURNAL

Thirty-one years of rice-rice-green manure rotations shape the rhizosphere microbial community and enrich beneficial bacteria

(2017) Xiaoxia Zhang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Steering Soil Microbiomes to Suppress Aboveground Insect Pests

(2017) Ana Pineda et al.   TRENDS IN PLANT SCIENCE

Analysis of Microbial Functions in the Rhizosphere Using a Metabolic-Network Based Framework for Metagenomics Interpretation

(2017) Shany Ofaim et al.   Frontiers in Microbiology

Comparative analysis of bacterial community structure in the rhizosphere of maize by high-throughput pyrosequencing

(2017) Yi Yang et al.   PLoS One

Principles for designing synthetic microbial communities

(2016) Nathan I Johns et al.   CURRENT OPINION IN MICROBIOLOGY

CE-MS for metabolomics: Developments and applications in the period 2014-2016

(2016) Rawi Ramautar et al.   ELECTROPHORESIS

Beneficial effects of bacteria-plant communication based on quorum sensing molecules of the N -acyl homoserine lactone group

(2016) Adam Schikora et al.   PLANT MOLECULAR BIOLOGY

A perspective on inter-kingdom signaling in plant–beneficial microbe interactions

(2016) Amanda Rosier et al.   PLANT MOLECULAR BIOLOGY

Root–Root Interactions: Towards A Rhizosphere Framework

(2016) Liesje Mommer et al.   TRENDS IN PLANT SCIENCE

Omic Relief for the Biotically Stressed: Metabolomics of Plant Biotic Interactions

(2016) Hezi Tenenboim et al.   TRENDS IN PLANT SCIENCE

Signaling in the Rhizosphere

(2016) Vittorio Venturi et al.   TRENDS IN PLANT SCIENCE

Metabolomics in the Rhizosphere: Tapping into Belowground Chemical Communication

(2016) Nicole M. van Dam et al.   TRENDS IN PLANT SCIENCE

Bacterial-Plant-Interactions: Approaches to Unravel the Biological Function of Bacterial Volatiles in the Rhizosphere

(2016) Marco Kai et al.   Frontiers in Microbiology

Quorum Sensing Inhibiting Activity of Streptomyces coelicoflavus Isolated from Soil

(2016) Ramadan Hassan et al.   Frontiers in Microbiology

Profiling of Altered Metabolomic States in Nicotiana tabacum Cells Induced by Priming Agents

(2016) Msizi I. Mhlongo et al.   Frontiers in Plant Science

Systemic Responses of Barley to the 3-hydroxy-decanoyl-homoserine Lactone Producing Plant Beneficial Endophyte Acidovorax radicis N35

(2016) Shengcai Han et al.   Frontiers in Plant Science

Core-Shell Columns in High-Performance Liquid Chromatography: Food Analysis Applications

(2016) Raffaella Preti   International Journal of Analytical Chemistry

Applications of the Single-probe: Mass Spectrometry Imaging and Single Cell Analysis under Ambient Conditions

(2016) Wei Rao et al.   Jove-Journal of Visualized Experiments

Phenylpropanoid Defences in Nicotiana tabacum Cells: Overlapping Metabolomes Indicate Common Aspects to Priming Responses Induced by Lipopolysaccharides, Chitosan and Flagellin-22

(2016) Msizi I. Mhlongo et al.   PLoS One

Ambient Mass Spectrometry Imaging Metabolomics Method Provides Novel Insights into the Action Mechanism of Drug Candidates

(2015) Jingjing He et al.   ANALYTICAL CHEMISTRY

Priming for Enhanced Defense

(2015) Uwe Conrath et al.   Annual Review of Phytopathology

Metabolomics approaches for resolving and harnessing chemical diversity in grapes, yeast and wine

(2015) N. Lloyd et al.   AUSTRALIAN JOURNAL OF GRAPE AND WINE RESEARCH

Priming and memory of stress responses in organisms lacking a nervous system

(2015) Monika Hilker et al.   BIOLOGICAL REVIEWS

Significant improvements in the characterization of volatile compound profiles in squid using simultaneous distillation-extraction and GC×GC-TOFMS

(2015) Yafang Jin et al.   CyTA-Journal of Food

Evaluation of Monolithic and Core-Shell Columns for Separation of Triazine Herbicides by Reversed Phase High Performance Liquid Chromatography

(2015) Ricardo P. Urio et al.   JOURNAL OF THE BRAZILIAN CHEMICAL SOCIETY

Bacterial bioeffectors delay postharvest fungal growth and modify total phenolics, flavonoids and anthocyanins in blackberries

(2015) Beatriz Ramos-Solano et al.   LWT-FOOD SCIENCE AND TECHNOLOGY

Assessment of automated trimethylsilyl derivatization protocols for GC–MS-based untargeted metabolomic analysis of urine

(2015) Hayley Abbiss et al.   Metabolomics

Cyclic Lipopeptides ofBacillus amyloliquefacienssubsp.plantarumColonizing the Lettuce Rhizosphere Enhance Plant Defense Responses Toward the Bottom Rot PathogenRhizoctonia solani

(2015) Soumitra Paul Chowdhury et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The potential of mass spectrometry imaging in plant metabolomics: a review

(2015) Heino M. Heyman et al.   PHYTOCHEMISTRY REVIEWS

Single-cell mass spectrometry reveals small molecules that affect cell fates in the 16-cell embryo

(2015) Rosemary M. Onjiko et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

What lies beneath: belowground defense strategies in plants

(2015) Barbara De Coninck et al.   TRENDS IN PLANT SCIENCE

The ‘prime-ome’: towards a holistic approach to priming

(2015) Andrea Balmer et al.   TRENDS IN PLANT SCIENCE

Systems biology of host-microbe metabolomics

(2015) Almut Heinken et al.   Wiley Interdisciplinary Reviews-Systems Biology and Medicine

Multi-dimensional TOF-SIMS analysis for effective profiling of disease-related ions from the tissue surface

(2015) Ji-Won Park et al.   Scientific Reports

Significant improvements in the characterization of volatile compound profiles in squid using simultaneous distillation-extraction and GC×GC-TOFMS

(2015) Yafang Jin et al.   CyTA-Journal of Food

Volatiles in Inter-Specific Bacterial Interactions

(2015) Olaf Tyc et al.   Frontiers in Microbiology

Root inoculation with Pseudomonas putida KT2440 induces transcriptional and metabolic changes and systemic resistance in maize plants

(2015) Chantal Planchamp et al.   Frontiers in Plant Science

Chemical diversity of microbial volatiles and their potential for plant growth and productivity

(2015) Chidananda Nagamangala Kanchiswamy et al.   Frontiers in Plant Science

Analyses of chlorogenic acids and related cinnamic acid derivatives from Nicotiana tabacumtissues with the aid of UPLC-QTOF-MS/MS based on the in-source collision-induced dissociation method

(2014) Efficient N Ncube et al.   Chemistry Central Journal

CE-MS for metabolomics: Developments and applications in the period 2012-2014

(2014) Rawi Ramautar et al.   ELECTROPHORESIS

Potential role of phytohormones and plant growth-promoting rhizobacteria in abiotic stresses: consequences for changing environment

(2014) Shah Fahad et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Core–shell particles: Preparation, fundamentals and applications in high performance liquid chromatography

(2014) Richard Hayes et al.   JOURNAL OF CHROMATOGRAPHY A

Silencing the mob: disrupting quorum sensing as a means to fight plant disease

(2014) Yael Helman et al.   MOLECULAR PLANT PATHOLOGY

N-Acyl-Homoserine Lactone Primes Plants for Cell Wall Reinforcement and Induces Resistance to Bacterial Pathogens via the Salicylic Acid/Oxylipin Pathway

(2014) S. T. Schenk et al.   PLANT CELL

Molecular and physiological stages of priming: how plants prepare for environmental challenges

(2014) J. Gamir et al.   PLANT CELL REPORTS

Multi-Platform Metabolomic Analyses of Ergosterol-Induced Dynamic Changes in Nicotiana tabacum Cells

(2014) Fidele Tugizimana et al.   PLoS One

Root exudates mediated interactions belowground

(2014) Feth el Zahar Haichar et al.   SOIL BIOLOGY & BIOCHEMISTRY

Liquid chromatography-mass spectrometry for the determination of chemical contaminants in food

(2014) Simon J. Hird et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

Current and future trends in UHPLC

(2014) Szabolcs Fekete et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

Recent innovations in UHPLC columns and instrumentation

(2014) Thomas H. Walter et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

Analytical protocols based on LC–MS, GC–MS and CE–MS for nontargeted metabolomics of biological tissues

(2014) Shama Naz et al.   Bioanalysis

Development and Optimization of an UPLC-QTOF-MS/MS Method Based on an In-Source Collision Induced Dissociation Approach for Comprehensive Discrimination of Chlorogenic Acids Isomers fromMomordicaPlant Species

(2014) N. E. Madala et al.   Journal of Analytical Methods in Chemistry

Tools and Databases of the KOMICS Web Portal for Preprocessing, Mining, and Dissemination of Metabolomics Data

(2014) Nozomu Sakurai et al.   Biomed Research International

Preparing to fight back: generation and storage of priming compounds

(2014) Victoria Pastor et al.   Frontiers in Plant Science

Sample Preparation Strategies for Mass Spectrometry Imaging of 3D Cell Culture Models

(2014) Dorothy R. Ahlf Wheatcraft et al.   Jove-Journal of Visualized Experiments

Siderophores in environmental research: roles and applications

(2014) E. Ahmed et al.   Microbial Biotechnology

Cross-stress tolerance and stress “memory” in plants: An integrated view

(2013) Sergi Munné-Bosch et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

The Composition of Root Exudates from Two Different Resistant Peanut Cultivars and Their Effects on the Growth of Soil-Borne Pathogen

(2013) Xiao-gang Li et al.   International Journal of Biological Sciences

Two Volatile Organic Compounds Trigger Plant Self-Defense against a Bacterial Pathogen and a Sucking Insect in Cucumber under Open Field Conditions

(2013) Geun Song et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Dynamic Chemical Communication between Plants and Bacteria through Airborne Signals: Induced Resistance by Bacterial Volatiles

(2013) Mohamed A. Farag et al.   JOURNAL OF CHEMICAL ECOLOGY

Pushing the performance limits of reversed-phase ultra high performance liquid chromatography with 1.3μm core–shell particles

(2013) A. Carl Sanchez et al.   JOURNAL OF CHROMATOGRAPHY A

Role of allelochemicals in plant growth promoting rhizobacteria for biocontrol of phytopathogens

(2013) Meenu Saraf et al.   MICROBIOLOGICAL RESEARCH

Recent Progress in Understanding PAMP- and Effector-Triggered Immunity against the Rice Blast Fungus Magnaporthe oryzae

(2013) Wende Liu et al.   Molecular Plant

PRIMe Update: Innovative Content for Plant Metabolomics and Integration of Gene Expression and Metabolite Accumulation

(2013) Tetsuya Sakurai et al.   PLANT AND CELL PHYSIOLOGY

Effects of different plant root exudates and their organic acid components on chemotaxis, biofilm formation and colonization by beneficial rhizosphere-associated bacterial strains

(2013) Nan Zhang et al.   PLANT AND SOIL

Costs and benefits of hormone-regulated plant defences

(2013) I. A. Vos et al.   PLANT PATHOLOGY

Signaling cross-talk in plant disease resistance

(2013) Holly Derksen et al.   PLANT SCIENCE

Plant metabolomics: A new frontier in phytochemical analysis

(2013) Fidele Tugizimana et al.   SOUTH AFRICAN JOURNAL OF SCIENCE

Arabidopsis PPP family of serine/threonine protein phosphatases: many targets but few engines

(2013) R. Glen Uhrig et al.   TRENDS IN PLANT SCIENCE

Bifurcation of Arabidopsis NLR Immune Signaling via Ca2+-Dependent Protein Kinases

(2013) Xiquan Gao et al.   PLoS Pathogens

Plant growth-promoting rhizobacteria and root system functioning

(2013) Jordan Vacheron et al.   Frontiers in Plant Science

Recent Progress in the Development of Metabolome Databases for Plant Systems Biology

(2013) Atsushi Fukushima et al.   Frontiers in Plant Science

Disease resistance or growth: the role of plant hormones in balancing immune responses and fitness costs

(2013) Nicolas Denancé et al.   Frontiers in Plant Science

ISR meets SAR outside: additive action of the endophyte Bacillus pumilus INR7 and the chemical inducer, benzothiadiazole, on induced resistance against bacterial spot in field-grown pepper

(2013) Hwe-Su Yi et al.   Frontiers in Plant Science

LC-MS METABOLOMICS FROM STUDY DESIGN TO DATA-ANALYSIS – USING A VERSATILE PATHOGEN AS A TEST CASE

(2013) Maya Berg et al.   Computational and Structural Biotechnology Journal

Evaluation and biochemical characterization of a distinctive pyoverdin from a pseudomonas isolated from chickpea rhizosphere

(2012) Neelam Tank et al.   BRAZILIAN JOURNAL OF MICROBIOLOGY

Interactions between hormone and redox signalling pathways in the control of growth and cross tolerance to stress

(2012) Carlos G. Bartoli et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Primed plants do not forget

(2012) V. Pastor et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Stable isotope probing of bacterial community structure and gene expression in the rhizosphere of Arabidopsis thaliana

(2012) Feth el Zahar Haichar et al.   FEMS MICROBIOLOGY ECOLOGY

Plant growth-promoting rhizobacteria (PGPR): their potential as antagonists and biocontrol agents

(2012) Anelise Beneduzi et al.   GENETICS AND MOLECULAR BIOLOGY

The role of flavonoids in root-rhizosphere signalling: opportunities and challenges for improving plant-microbe interactions

(2012) S. Hassan et al.   JOURNAL OF EXPERIMENTAL BOTANY

Detection and quantitation of a pheomelanin component in melanin pigments using pyrolysis-gas chromatography/tandem mass spectrometry system with multiple reaction monitoring mode

(2012) Anna Dzierżęga-Lęcznar et al.   JOURNAL OF MASS SPECTROMETRY

Imaging mass spectrometry in biomarker discovery and validation

(2012) Kristina Schwamborn   Journal of Proteomics

Evaluating the challenges associated with time-of-fight secondary ion mass spectrometry for metabolomics using pure and mixed metabolites

(2012) John S. Fletcher et al.   Metabolomics

MetaboLights: towards a new COSMOS of metabolomics data management

(2012) Christoph Steinbeck et al.   Metabolomics

Priming of the Arabidopsis pattern-triggered immunity response upon infection by necrotrophicPectobacterium carotovorumbacteria

(2012) Chen Po-Wen et al.   MOLECULAR PLANT PATHOLOGY

Metabolic and Transcriptomic Changes Induced in Arabidopsis by the Rhizobacterium Pseudomonas fluorescens SS101

(2012) J. E. van de Mortel et al.   PLANT PHYSIOLOGY

Prime Time for Transgenerational Defense

(2012) C. M. J. Pieterse   PLANT PHYSIOLOGY

On the Discordance of Metabolomics with Proteomics and Transcriptomics: Coping with Increasing Complexity in Logic, Chemistry, and Network Interactions Scientific Correspondence

(2012) A. R. Fernie et al.   PLANT PHYSIOLOGY

Quorum Quenching Revisited—From Signal Decays to Signalling Confusion

(2012) Kar-Wai Hong et al.   SENSORS

Transgenerational defense induction and epigenetic inheritance in plants

(2012) Liza M. Holeski et al.   TRENDS IN ECOLOGY & EVOLUTION

Catch me if you can: bacterial effectors and plant targets

(2012) Laurent Deslandes et al.   TRENDS IN PLANT SCIENCE

SOS – too many signals for systemic acquired resistance?

(2012) D’Maris Amick Dempsey et al.   TRENDS IN PLANT SCIENCE

The Role of Auxin-Cytokinin Antagonism in Plant-Pathogen Interactions

(2012) Muhammad Naseem et al.   PLoS Pathogens

Priming against environmental challenges and proteomics in plants: Update and agricultural perspectives

(2012) Georgia Tanou et al.   Frontiers in Plant Science

Integration of expression data in genome-scale metabolic network reconstructions

(2012) Anna S. Blazier et al.   Frontiers in Physiology

MeRy-B: a web knowledgebase for the storage, visualization, analysis and annotation of plant NMR metabolomic profiles

(2011) Hélène Ferry-Dumazet et al.   BMC PLANT BIOLOGY

Sensory changes related to breeding for plant architecture and resistance to viruses and anthracnose in bean market class Fabada (Phaseolus vulgaris L.)

(2011) J. J. Ferreira et al.   EUPHYTICA

Mass Spectrometry Strategies in Metabolomics

(2011) Zhentian Lei et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Induction of DIMBOA accumulation and systemic defense responses as a mechanism of enhanced resistance of mycorrhizal corn (Zea mays L.) to sheath blight

(2011) Yuan Yuan Song et al.   MYCORRHIZA

Molecular chemistry of organic aerosols through the application of high resolution mass spectrometry

(2011) Sergey A. Nizkorodov et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Recent advances of metabolomics in plant biotechnology

(2011) Yozo Okazaki et al.   Plant Biotechnology Reports

Descendants of Primed Arabidopsis Plants Exhibit Resistance to Biotic Stress

(2011) A. Slaughter et al.   PLANT PHYSIOLOGY

N-3-Oxo-Decanoyl-L-Homoserine-Lactone Activates Auxin-Induced Adventitious Root Formation via Hydrogen Peroxide- and Nitric Oxide-Dependent Cyclic GMP Signaling in Mung Bean

(2011) X. Bai et al.   PLANT PHYSIOLOGY

Next-Generation Systemic Acquired Resistance

(2011) E. Luna et al.   PLANT PHYSIOLOGY

Volatile organic compounds (VOCs) in soils

(2010) Heribert Insam et al.   BIOLOGY AND FERTILITY OF SOILS

Biotechnological concepts for improving plant innate immunity

(2010) Andrea A Gust et al.   CURRENT OPINION IN BIOTECHNOLOGY

Qualitative and Quantitative Sugar Profiling in Olive Fruits, Leaves, and Stems by Gas Chromatography−Tandem Mass Spectrometry (GC-MS/MS) after Ultrasound-Assisted Leaching

(2010) Soledad Gómez-González et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Plant Immunity Triggered by Microbial Molecular Signatures

(2010) Jie Zhang et al.   Molecular Plant

Dual metabolomics: A novel approach to understanding plant–pathogen interactions

(2010) J. William Allwood et al.   PHYTOCHEMISTRY

PEPR2 Is a Second Receptor for the Pep1 and Pep2 Peptides and Contributes to Defense Responses in Arabidopsis

(2010) Y. Yamaguchi et al.   PLANT CELL

Plant Immunity: It's the Hormones Talking, But What Do They Say?

(2010) A. Verhage et al.   PLANT PHYSIOLOGY

PlantMetabolomics.org: A Web Portal for Plant Metabolomics Experiments

(2010) P. Bais et al.   PLANT PHYSIOLOGY

Helping plants to deal with insects: the role of beneficial soil-borne microbes

(2010) Ana Pineda et al.   TRENDS IN PLANT SCIENCE

Iron(III)–siderophore coordination chemistry: Reactivity of marine siderophores

(2009) Alison Butler et al.   COORDINATION CHEMISTRY REVIEWS

Integrated omics approaches in plant systems biology

(2009) Atsushi Fukushima et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Chemical Diversity and Defence Metabolism: How Plants Cope with Pathogens and Ozone Pollution

(2009) Marcello Iriti et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Root Colonization by an Arbuscular Mycorrhizal (AM) Fungus Increases Growth and Secondary Metabolism of Purple Coneflower, Echinacea purpurea (L.) Moench

(2009) Ghada Araim et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Porous graphitic carbon: A versatile stationary phase for liquid chromatography

(2009) C. West et al.   JOURNAL OF CHROMATOGRAPHY A

Root exudate is allelopathic in invaded community but not in native community: field evidence for the novel weapons hypothesis

(2009) Andrea S. Thorpe et al.   JOURNAL OF ECOLOGY

Pseudomonas spp.-induced systemic resistance to Botrytis cinerea is associated with induction and priming of defence responses in grapevine

(2009) B. W. M. Verhagen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Networking by small-molecule hormones in plant immunity

(2009) Corné M J Pieterse et al.   Nature Chemical Biology

Regulation and function of root exudates

(2009) DAYAKAR V. BADRI et al.   PLANT CELL AND ENVIRONMENT

Antagonistic Activities of Volatiles from Four Strains of Bacillus spp. and Paenibacillus spp. Against Soil-Borne Plant Pathogens

(2008) Wei-wei LIU et al.   Agricultural Sciences in China

XCMS2: Processing Tandem Mass Spectrometry Data for Metabolite Identification and Structural Characterization

(2008) H. P. Benton et al.   ANALYTICAL CHEMISTRY

Bacterial volatiles and their action potential

(2008) Marco Kai et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Pattern-recognition receptors in plant innate immunity

(2008) Cyril Zipfel   CURRENT OPINION IN IMMUNOLOGY

Plant immune responses triggered by beneficial microbes

(2008) Saskia CM Van Wees et al.   CURRENT OPINION IN PLANT BIOLOGY

Induction of Plant Defense Gene Expression by Plant Activators and Pseudomonas syringae pv. tomato in Greenhouse-Grown Tomatoes

(2008) M. A. B. Herman et al.   PHYTOPATHOLOGY

MYB72, a node of convergence in induced systemic resistance triggered by a fungal and a bacterial beneficial microbe

(2008) G. Segarra et al.   PLANT BIOLOGY

Cross Talk in Defense Signaling

(2008) A. Koornneef et al.   PLANT PHYSIOLOGY