Flux profiling of photosynthetic carbon metabolism in intact plants

Non-stationary13C-metabolic flux ratio analysis

(2013) Manuel Hörl et al.   BIOTECHNOLOGY AND BIOENGINEERING

Isotopically non-stationary metabolic flux analysis: complex yet highly informative

(2013) Wolfgang Wiechert et al.   CURRENT OPINION IN BIOTECHNOLOGY

Systems-integration of plant metabolism: means, motive and opportunity

(2013) Mark Stitt   CURRENT OPINION IN PLANT BIOLOGY

Metabolic Fluxes in an Illuminated Arabidopsis Rosette

(2013) M. Szecowka et al.   PLANT CELL

Integration of Genome-Scale Modeling and Transcript Profiling Reveals Metabolic Pathways Underlying Light and Temperature Acclimation in Arabidopsis

(2013) N. Topfer et al.   PLANT CELL

Analysis of metabolic flux using dynamic labelling and metabolic modelling

(2013) A. R. FERNIE et al.   PLANT CELL AND ENVIRONMENT

Diurnal Changes of Polysome Loading Track Sucrose Content in the Rosette of Wild-Type Arabidopsis and the Starchless pgm Mutant

(2013) S. K. Pal et al.   PLANT PHYSIOLOGY

Impact of the Carbon and Nitrogen Supply on Relationships and Connectivity between Metabolism and Biomass in a Broad Panel of Arabidopsis Accessions

(2013) R. Sulpice et al.   PLANT PHYSIOLOGY

Insights into metabolic efficiency from flux analysis

(2012) Xuewen Chen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Meta-analysis of untargeted metabolomic data from multiple profiling experiments

(2012) Gary J Patti et al.   Nature Protocols

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

High-resolution plant metabolomics: from mass spectral features to metabolites and from whole-cell analysis to subcellular metabolite distributions

(2012) Stephan Kueger et al.   PLANT JOURNAL

On the Discordance of Metabolomics with Proteomics and Transcriptomics: Coping with Increasing Complexity in Logic, Chemistry, and Network Interactions Scientific Correspondence

(2012) A. R. Fernie et al.   PLANT PHYSIOLOGY

Grand Challenges in Plant Systems Biology: Closing the Circle(s)

(2012) Alisdair R. Fernie   Frontiers in Plant Science

Integration of expression data in genome-scale metabolic network reconstructions

(2012) Anna S. Blazier et al.   Frontiers in Physiology

Collisional fragmentation of central carbon metabolites in LC-MS/MS increases precision of 13C metabolic flux analysis

(2011) Martin Rühl et al.   BIOTECHNOLOGY AND BIOENGINEERING

Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function

(2011) Takayuki Tohge et al.   Nature Protocols

Metabolite extraction from suspension-cultured mammalian cells for global metabolite profiling

(2011) Christopher A Sellick et al.   Nature Protocols

Global urinary metabolic profiling procedures using gas chromatography–mass spectrometry

(2011) Eric Chun Yong Chan et al.   Nature Protocols

Identification of Genes in the Phenylalanine Metabolic Pathway by Ectopic Expression of a MYB Transcription Factor in Tomato Fruit

(2011) V. Dal Cin et al.   PLANT CELL

Recommendations for Reporting Metabolite Data

(2011) A. R. Fernie et al.   PLANT CELL

Analysis of the compartmentalized metabolome – a validation of the non-aqueous fractionation technique

(2011) Sebastian Klie   Frontiers in Plant Science

From models to crop species: caveats and solutions for translational metabolomics

(2011) Takayuki Tohge   Frontiers in Plant Science

Functional integration of a metabolic network model and expression data without arbitrary thresholding

(2010) Paul A. Jensen et al.   BIOINFORMATICS

Stationary versus non-stationary 13C-MFA: A comparison using a consistent dataset

(2010) Stephan Noack et al.   JOURNAL OF BIOTECHNOLOGY

Central metabolic fluxes in the endosperm of developing maize seeds and their implications for metabolic engineering

(2010) Ana P. Alonso et al.   METABOLIC ENGINEERING

NMR-based metabolomic analysis of plants

(2010) Hye Kyong Kim et al.   Nature Protocols

Identification of the 2-Hydroxyglutarate and Isovaleryl-CoA Dehydrogenases as Alternative Electron Donors Linking Lysine Catabolism to the Electron Transport Chain of Arabidopsis Mitochondria

(2010) W. L. Araujo et al.   PLANT CELL

A Genome-Scale Metabolic Model Accurately Predicts Fluxes in Central Carbon Metabolism under Stress Conditions

(2010) Thomas C.R. Williams et al.   PLANT PHYSIOLOGY

MetAlign: Interface-Driven, Versatile Metabolomics Tool for Hyphenated Full-Scan Mass Spectrometry Data Preprocessing

(2009) Arjen Lommen   ANALYTICAL CHEMISTRY

Metabolic turnover analysis by a combination of in vivo13C-labelling from 13CO2 and metabolic profiling with CE-MS/MS reveals rate-limiting steps of the C3 photosynthetic pathway in Nicotiana tabacum leaves

(2009) Tomohisa Hasunuma et al.   JOURNAL OF EXPERIMENTAL BOTANY

Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression

(2009) Arun Sreekumar et al.   NATURE

Web-based resources for mass-spectrometry-based metabolomics: A user’s guide

(2009) Takayuki Tohge et al.   PHYTOCHEMISTRY

Use of reverse-phase liquid chromatography, linked to tandem mass spectrometry, to profile the Calvin cycle and other metabolic intermediates in Arabidopsis rosettes at different carbon dioxide concentrations

(2009) Stéphanie Arrivault et al.   PLANT JOURNAL

Subcellular Flux Analysis of Central Metabolism in a Heterotrophic Arabidopsis Cell Suspension Using Steady-State Stable Isotope Labeling

(2009) S. K. Masakapalli et al.   PLANT PHYSIOLOGY

AtMetExpress Development: A Phytochemical Atlas of Arabidopsis Development

(2009) F. Matsuda et al.   PLANT PHYSIOLOGY

A Genome-Scale Metabolic Model of Arabidopsis and Some of Its Properties

(2009) M. G. Poolman et al.   PLANT PHYSIOLOGY

Starch as a major integrator in the regulation of plant growth

(2009) R. Sulpice et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TagFinder for the quantitative analysis of gas chromatography—mass spectrometry (GC-MS)-based metabolite profiling experiments

(2008) Alexander Luedemann et al.   BIOINFORMATICS

Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project

(2008) Chris F Taylor et al.   NATURE BIOTECHNOLOGY

1H NMR metabolite fingerprinting and metabolomic analysis of perchloric acid extracts from plant tissues

(2008) Nicholas J Kruger et al.   Nature Protocols

Kinetic flux profiling for quantitation of cellular metabolic fluxes

(2008) Jie Yuan et al.   Nature Protocols

Quality control for plant metabolomics: reporting MSI-compliant studies

(2008) Oliver Fiehn et al.   PLANT JOURNAL

The role of light in soybean seed filling metabolism

(2008) Doug K. Allen et al.   PLANT JOURNAL