Network analysis of the metabolome and transcriptome reveals novel regulation of potato pigmentation

The State of the Art in Biosynthesis of Anthocyanins and Its Regulation in Pigmented Sweet Oranges [(Citrus sinensis) L. Osbeck]

(2015) Angela Roberta Lo Piero   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Comparative Transcriptome Analysis of White and Purple Potato to Identify Genes Involved in Anthocyanin Biosynthesis

(2015) Yuhui Liu et al.   PLoS One

Plant leaf senescence and death - regulation by multiple layers of control and implications for aging in general

(2013) H. R. Woo et al.   JOURNAL OF CELL SCIENCE

Metabolite profiling and quantification of phytochemicals in potato extracts using ultra-high-performance liquid chromatography-mass spectrometry

(2013) Esther Swee Lan Chong et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Regulation of flavonoid biosynthesis involves an unexpected complex transcriptional regulation ofTT8expression, in Arabidopsis

(2013) Wenjia Xu et al.   NEW PHYTOLOGIST

Regulation of anthocyanin biosynthesis in Arabidopsis thaliana red pap1-D cells metabolically programmed by auxins

(2013) Zhong Liu et al.   PLANTA

New insights into the regulation of anthocyanin biosynthesis in fruits

(2013) Laura Jaakola   TRENDS IN PLANT SCIENCE

Meta-analysis of untargeted metabolomic data from multiple profiling experiments

(2012) Gary J Patti et al.   Nature Protocols

Identification and characterization of MYB-bHLH-WD40 regulatory complexes controlling proanthocyanidin biosynthesis in strawberry (Fragaria × ananassa) fruits

(2012) Jan G. Schaart et al.   NEW PHYTOLOGIST

Jasmonoyl-l-isoleucine hydrolase 1 (JIH1) regulates jasmonoyl-l-isoleucine levels and attenuates plant defenses against herbivores

(2012) Melkamu G. Woldemariam et al.   PLANT JOURNAL

Characterization of the regulatory network of BoMYB2 in controlling anthocyanin biosynthesis in purple cauliflower

(2012) Li-Wei Chiu et al.   PLANTA

Study of the mass spectrometric behaviors of anthocyanins in negative ionization mode and its applications for characterization of anthocyanins and non-anthocyanin polyphenols

(2012) Jianghao Sun et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

LC-PDA-ESI/MSnIdentification of New Anthocyanins in Purple Bordeaux Radish (Raphanus sativus L. Variety)

(2011) Long-Ze Lin et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Functional analysis of Antirrhinum kelloggii flavonoid 3′-hydroxylase and flavonoid 3′,5′-hydroxylase genes; critical role in flower color and evolution in the genus Antirrhinum

(2011) Kanako Ishiguro et al.   JOURNAL OF PLANT RESEARCH

Genome sequence and analysis of the tuber crop potato

(2011) Xun Xu et al.   NATURE

The Jasmonate-ZIM-Domain Proteins Interact with the WD-Repeat/bHLH/MYB Complexes to Regulate Jasmonate-Mediated Anthocyanin Accumulation and Trichome Initiation inArabidopsis thaliana

(2011) Tiancong Qi et al.   PLANT CELL

Flavonoid profiling and transcriptome analysis reveals new gene–metabolite correlations in tubers of Solanum tuberosum L.

(2010) Cecil Stushnoff et al.   JOURNAL OF EXPERIMENTAL BOTANY

Biosynthesis of Anthocyanins and Their Regulation in Colored Grapes

(2010) Fei He et al.   MOLECULES

Ethylene Suppression of Sugar-Induced Anthocyanin Pigmentation in Arabidopsis

(2010) S.-W. Jeong et al.   PLANT PHYSIOLOGY

Anthocyanins: Natural Colorants with Health-Promoting Properties

(2010) Jian He et al.   Annual Review of Food Science and Technology

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Characterization of Anthocyanins and Anthocyanidins in Purple-Fleshed Sweetpotatoes by HPLC-DAD/ESI-MS/MS

(2009) Van-Den Truong et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Gene and Metabolite Regulatory Network Analysis of Early Developing Fruit Tissues Highlights New Candidate Genes for the Control of Tomato Fruit Composition and Development

(2009) F. Mounet et al.   PLANT PHYSIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Integrated Transcriptomics, Proteomics, and Metabolomics Analyses To Survey Ozone Responses in the Leaves of Rice Seedling

(2008) Kyoungwon Cho et al.   JOURNAL OF PROTEOME RESEARCH

Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1

(2008) R. A. Gutierrez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Decoding genes with coexpression networks and metabolomics – ‘majority report by precogs’

(2007) Kazuki Saito et al.   TRENDS IN PLANT SCIENCE