Tailoring plant-associated microbial inoculants in agriculture: a roadmap for successful application

Complete Genome Sequence of Paenibacillus sp. JZ16, a Plant Growth Promoting Root Endophytic Bacterium of the Desert Halophyte Zygophyllum Simplex

(2020) Abdul Aziz Eida et al.   CURRENT MICROBIOLOGY

Modulation of the Root Microbiome by Plant Molecules: The Basis for Targeted Disease Suppression and Plant Growth Promotion

(2020) Alberto Pascale et al.   Frontiers in Plant Science

Root Exudation of Primary Metabolites: Mechanisms and Their Roles in Plant Responses to Environmental Stimuli

(2019) Alberto Canarini et al.   Frontiers in Plant Science

Editorial: Using Genomics, Metagenomics and Other “Omics” to Assess Valuable Microbial Ecosystem Services and Novel Biotechnological Applications

(2019) Diana E. Marco et al.   Frontiers in Microbiology

Factors Influencing Leaf- and Root-Associated Communities of Bacteria and Fungi Across 33 Plant Orders in a Grassland

(2019) Hirokazu Toju et al.   Frontiers in Microbiology

Balancing trade-offs between biotic and abiotic stress responses through leaf age-dependent variation in stress hormone cross-talk

(2019) Matthias L. Berens et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic regulation of the maize rhizobiome by benzoxazinoids

(2019) T. E. Anne Cotton et al.   ISME Journal

A specialized metabolic network selectively modulates Arabidopsis root microbiota

(2019) Ancheng C. Huang et al.   SCIENCE

Engineering banana endosphere microbiome to improve Fusarium wilt resistance in banana

(2019) Yupei Liu et al.   Microbiome

Culturomics of the plant prokaryotic microbiome and the dawn of plant-based culture media – A review

(2019) Mohamed S. Sarhan et al.   Journal of Advanced Research

Deciphering microbial diversity associated with Fusarium wilt-diseased and disease-free banana rhizosphere soil

(2019) Dengbo Zhou et al.   BMC MICROBIOLOGY

Endosymbiotic Methylobacterium oryzae mitigates the impact of limited water availability in lentil (Lens culinaris Medik.) by increasing plant cytokinin levels

(2019) Gabriel Lemes Jorge et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Holobiont chronobiology: mycorrhiza may be a key to linking aboveground and underground rhythms

(2019) Soon-Jae Lee et al.   MYCORRHIZA

Plant-derived coumarins shape the composition of an Arabidopsis synthetic root microbiome

(2019) Mathias J. E. E. E. Voges et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Soil Depth Determines the Composition and Diversity of Bacterial and Archaeal Communities in a Poplar Plantation

(2019) Huili Feng et al.   Forests

Not Just a Pathogen? Description of a Plant-Beneficial Pseudomonas syringae Strain

(2019) Alessandro Passera et al.   Frontiers in Microbiology

Type III Secretion System of Beneficial Rhizobacteria Pseudomonas simiae WCS417 and Pseudomonas defensor WCS374

(2019) Ioannis A. Stringlis et al.   Frontiers in Microbiology

Seeds of native alpine plants host unique microbial communities embedded in cross-kingdom networks

(2019) Birgit Wassermann et al.   Microbiome

Targeted isolation and cultivation of uncultivated bacteria by reverse genomics

(2019) Karissa L. Cross et al.   NATURE BIOTECHNOLOGY

Genome Sequences of a Plant Beneficial Synthetic Bacterial Community Reveal Genetic Features for Successful Plant Colonization

(2019) Rafael Soares Correa de Souza et al.   Frontiers in Microbiology

Plant Host-Associated Mechanisms for Microbial Selection

(2019) Piet Jones et al.   Frontiers in Plant Science

Initial soil microbiome composition and functioning predetermine future plant health

(2019) Zhong Wei et al.   Science Advances

Synthetic microbiota reveal priority effects and keystone strains in the Arabidopsis phyllosphere

(2019) Charlotte I. Carlström et al.   Nature Ecology & Evolution

Rhizosphere-Associated Pseudomonas Suppress Local Root Immune Responses by Gluconic Acid-Mediated Lowering of Environmental pH

(2019) Ke Yu et al.   CURRENT BIOLOGY

The effects of soil phosphorus content on plant microbiota are driven by the plant phosphate starvation response

(2019) Omri M. Finkel et al.   PLOS BIOLOGY

Seed Coating: A Tool for Delivering Beneficial Microbes to Agricultural Crops

(2019) Inês Rocha et al.   Frontiers in Plant Science

Phage combination therapies for bacterial wilt disease in tomato

(2019) Xiaofang Wang et al.   NATURE BIOTECHNOLOGY

Bioprospecting desert plant Bacillus endophytic strains for their potential to enhance plant stress tolerance

(2019) Ameerah Bokhari et al.   Scientific Reports

Suppression of the activity of arbuscular mycorrhizal fungi by the soil microbiota

(2018) Nanna B Svenningsen et al.   ISME Journal

Root exudates from citrus plants subjected to abiotic stress conditions have a positive effect on rhizobacteria

(2018) Vicente Vives-Peris et al.   JOURNAL OF PLANT PHYSIOLOGY

Nitrogen and phosphate metabolism in ectomycorrhizas

(2018) Uwe Nehls et al.   NEW PHYTOLOGIST

Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria

(2018) Ling Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MYB72-dependent coumarin exudation shapes root microbiome assembly to promote plant health

(2018) Ioannis A. Stringlis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gibberellin Localization and Transport in Plants

(2018) Jenia Binenbaum et al.   TRENDS IN PLANT SCIENCE

Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?

(2018) Joelle Sasse et al.   TRENDS IN PLANT SCIENCE

Metaorganisms in extreme environments: do microbes play a role in organismal adaptation?

(2018) Corinna Bang et al.   ZOOLOGY

Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota

(2018) Lingfei Hu et al.   Nature Communications

Compositional shifts in root-associated bacterial and archaeal microbiota track the plant life cycle in field-grown rice

(2018) Joseph A. Edwards et al.   PLOS BIOLOGY

Design of synthetic bacterial communities for predictable plant phenotypes

(2018) Sur Herrera Paredes et al.   PLOS BIOLOGY

Ethylene induced plant stress tolerance by Enterobacter sp. SA187 is mediated by 2‐keto‐4‐methylthiobutyric acid production

(2018) Axel de Zélicourt et al.   PLoS Genetics

Crop rotational diversity increases disease suppressive capacity of soil microbiomes

(2018) Ariane L. Peralta et al.   Ecosphere

Tillage Changes Vertical Distribution of Soil Bacterial and Fungal Communities

(2018) Ruibo Sun et al.   Frontiers in Microbiology

Boosting Alfalfa (Medicago sativa L.) Production With Rhizobacteria From Various Plants in Saudi Arabia

(2018) Ihsanullah Daur et al.   Frontiers in Microbiology

Comparative Microbiome Analysis of a Fusarium Wilt Suppressive Soil and a Fusarium Wilt Conducive Soil From the Châteaurenard Region

(2018) Katarzyna Siegel-Hertz et al.   Frontiers in Microbiology

How Does Salinity Shape Bacterial and Fungal Microbiomes of Alnus glutinosa Roots?

(2018) Dominika Thiem et al.   Frontiers in Microbiology

Drought Stress and Root-Associated Bacterial Communities

(2018) Dan Naylor et al.   Frontiers in Plant Science

A Community-Based Culture Collection for Targeting Novel Plant Growth-Promoting Bacteria from the Sugarcane Microbiome

(2018) Jaderson Silveira Leite Armanhi et al.   Frontiers in Plant Science

Tillage intensity and pasture in rotation effectively shape soil microbial communities at a landscape scale

(2018) Cédric Le Guillou et al.   MicrobiologyOpen

COREMIC: a web-tool to search for a niche associated CORE MICrobiome

(2018) Richard R. Rodrigues et al.   PeerJ

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly

(2018) Kateryna Zhalnina et al.   Nature Microbiology

Bipartite interactions, antibiotic production and biosynthetic potential of the Arabidopsis leaf microbiome

(2018) Eric J. N. Helfrich et al.   Nature Microbiology

Loss of NifQ leads to accumulation of porphyrins and altered metal-homeostasis in nitrogen-fixing symbioses.

(2018) Maged M. Saad et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Activation of the salicylic acid signalling pathway in wheat had no significant short-term impact on the diversity of root-associated microbiomes

(2018) Hongwei Liu et al.   PEDOBIOLOGIA

Challenges and Approaches in Microbiome Research: From Fundamental to Applied

(2018) Chrysi Sergaki et al.   Frontiers in Plant Science

Soil acidification amendments change the rhizosphere bacterial community of tobacco in a bacterial wilt affected field

(2018) Guihua Shen et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival

(2018) Paloma Durán et al.   CELL

Elucidating Bacterial Gene Functions in the Plant Microbiome

(2018) Asaf Levy et al.   Cell Host & Microbe

Plant growth-promoting archaea trigger induced systemic resistance in Arabidopsis thaliana against Pectobacterium carotovorum and Pseudomonas syringae

(2018) Geun Cheol Song et al.   ENVIRONMENTAL MICROBIOLOGY

Rhizosphere microbiome structure alters to enable wilt resistance in tomato

(2018) Min-Jung Kwak et al.   NATURE BIOTECHNOLOGY

Desert plant bacteria reveal host influence and beneficial plant growth properties

(2018) Abdul Aziz Eida et al.   PLoS One

Changes in soil microbial community response to precipitation events in a semi-arid steppe of the Xilin River Basin, China

(2018) Hui Zhang et al.   Journal of Arid Land

Plant Phenotypic Traits Eventually Shape Its Microbiota: A Common Garden Test

(2018) Yunshi Li et al.   Frontiers in Microbiology

Plant Nutrient Resource Use Strategies Shape Active Rhizosphere Microbiota Through Root Exudation

(2018) Julien P. Guyonnet et al.   Frontiers in Plant Science

Microbial Consortia: Promising Probiotics as Plant Biostimulants for Sustainable Agriculture

(2018) Sheridan L. Woo et al.   Frontiers in Plant Science

Paving the Way From the Lab to the Field: Using Synthetic Microbial Consortia to Produce High-Quality Crops

(2018) Zhaoyu Kong et al.   Frontiers in Plant Science

Root microbiota drive direct integration of phosphate stress and immunity

(2017) Gabriel Castrillo et al.   NATURE

Plant growth-promoting rhizobacteria enhance wheat salt and drought stress tolerance by altering endogenous phytohormone levels and TaCTR1 /TaDREB2 expression

(2017) Deepti Barnawal et al.   PHYSIOLOGIA PLANTARUM

Disease Suppressive Soils: New Insights from the Soil Microbiome

(2017) Daniel Schlatter et al.   PHYTOPATHOLOGY

Small molecules below-ground: the role of specialized metabolites in the rhizosphere

(2017) Hassan Massalha et al.   PLANT JOURNAL

Root transcriptional dynamics induced by beneficial rhizobacteria and microbial immune elicitors reveal signatures of adaptation to mutualists

(2017) Ioannis A. Stringlis et al.   PLANT JOURNAL

Simplified and representative bacterial community of maize roots

(2017) Ben Niu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence

(2017) Yun Kit Yeoh et al.   Nature Communications

Type 3 Secretion System (T3SS) of Bradyrhizobium sp. DOA9 and Its Roles in Legume Symbiosis and Rice Endophytic Association

(2017) Pongpan Songwattana et al.   Frontiers in Microbiology

Long-term Fertilization Structures Bacterial and Archaeal Communities along Soil Depth Gradient in a Paddy Soil

(2017) Yunfu Gu et al.   Frontiers in Microbiology

Fertilization Shapes Bacterial Community Structure by Alteration of Soil pH

(2017) Yuting Zhang et al.   Frontiers in Microbiology

Complete Genome Sequence Analysis of Enterobacter sp. SA187, a Plant Multi-Stress Tolerance Promoting Endophytic Bacterium

(2017) Cristina Andrés-Barrao et al.   Frontiers in Microbiology

Assessment of Methylobacterium oryzae CBMB20 aggregates for salt tolerance and plant growth promoting characteristics for bio-inoculant development

(2017) Mak Chanratana et al.   AMB Express

Effects of jasmonic acid signalling on the wheat microbiome differ between body sites

(2017) Hongwei Liu et al.   Scientific Reports

Indigenous salt-tolerant rhizobacterium Pantoea dispersa (PSB3) reduces sodium uptake and mitigates the effects of salt stress on growth and yield of chickpea

(2016) Meenu Panwar et al.   ACTA PHYSIOLOGIAE PLANTARUM

The Plant Microbiota: Systems-Level Insights and Perspectives

(2016) Daniel B. Müller et al.   Annual Review of Genetics

Effect of Plant Growth Promoting Bacteria Associated with Halophytic Weed (Psoralea corylifolia L) on Germination and Seedling Growth of Wheat Under Saline Conditions

(2016) Ajay M. Sorty et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

The effect of pH on phosphorus availability and speciation in an aquaponics nutrient solution

(2016) Brunno da Silva Cerozi et al.   BIORESOURCE TECHNOLOGY

Stable isotope probing of carbon flow in the plant holobiont

(2016) Feth el Zahar Haichar et al.   CURRENT OPINION IN BIOTECHNOLOGY

Microbial legacies alter decomposition in response to simulated global change

(2016) Jennifer BH Martiny et al.   ISME Journal

Comparative analysis of bacterial diversity in the rhizosphere of tomato by culture-dependent and -independent approaches

(2016) Shin Ae Lee et al.   JOURNAL OF MICROBIOLOGY

The Cucurbita pepo seed microbiome: genotype-specific composition and implications for breeding

(2016) Eveline Adam et al.   PLANT AND SOIL

Bacterial populations in juvenile maize rhizospheres originate from both seed and soil

(2016) David Johnston-Monje et al.   PLANT AND SOIL

Strigolactones: new plant hormones in action

(2016) Binne Zwanenburg et al.   PLANTA

Impact of Soil Salinity on the Structure of the Bacterial Endophytic Community Identified from the Roots of Caliph Medic (Medicago truncatula)

(2016) Mahmoud W. Yaish et al.   PLoS One

Root nodule symbiosis inLotus japonicusdrives the establishment of distinctive rhizosphere, root, and nodule bacterial communities

(2016) Rafal Zgadzaj et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

No hormone to rule them all: Interactions of plant hormones during the responses of plants to pathogens

(2016) Alexandra M. Shigenaga et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Signaling in the Rhizosphere

(2016) Vittorio Venturi et al.   TRENDS IN PLANT SCIENCE

A hydrophobic ammonia-oxidizing archaeon of theNitrosocosmicusclade isolated from coal tar-contaminated sediment

(2016) Man-Young Jung et al.   Environmental Microbiology Reports

Host genotype and age shape the leaf and root microbiomes of a wild perennial plant

(2016) Maggie R. Wagner et al.   Nature Communications

Revised Estimates for the Number of Human and Bacteria Cells in the Body

(2016) Ron Sender et al.   PLOS BIOLOGY

Performance of 16s rDNA Primer Pairs in the Study of Rhizosphere and Endosphere Bacterial Microbiomes in Metabarcoding Studies

(2016) Bram Beckers et al.   Frontiers in Microbiology

Microbiome Selection Could Spur Next-Generation Plant Breeding Strategies

(2016) Murali Gopal et al.   Frontiers in Microbiology

Mineral vs. Organic Amendments: Microbial Community Structure, Activity and Abundance of Agriculturally Relevant Microbes Are Driven by Long-Term Fertilization Strategies

(2016) Davide Francioli et al.   Frontiers in Microbiology

Supramolecular Structure and Functional Analysis of the Type III Secretion System in Pseudomonas fluorescens 2P24

(2016) Ping Liu et al.   Frontiers in Plant Science

Tree phyllosphere bacterial communities: exploring the magnitude of intra- and inter-individual variation among host species

(2016) Isabelle Laforest-Lapointe et al.   PeerJ

Mycorrhizal Inoculation Modulates Root Morphology and Root Phytohormone Responses in Trifoliate Orange under Drought Stress

(2016) Jin Liu et al.   Emirates Journal of Food and Agriculture

Isolation of phytohormones producing plant growth promoting rhizobacteria from weeds growing in Khewra salt range, Pakistan and their implication in providing salt tolerance to Glycine max L.

(2016) Naz Irum et al.   AFRICAN JOURNAL OF BIOTECHNOLOGY

Diversity and Composition of the Leaf Mycobiome of Beech (Fagus sylvatica) Are Affected by Local Habitat Conditions and Leaf Biochemistry

(2016) Martin Unterseher et al.   PLoS One

Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley

(2015) Davide Bulgarelli et al.   Cell Host & Microbe

Microbiota and Host Nutrition across Plant and Animal Kingdoms

(2015) Stéphane Hacquard et al.   Cell Host & Microbe

Effects of Diurnal Variation of Gut Microbes and High-Fat Feeding on Host Circadian Clock Function and Metabolism

(2015) Vanessa Leone et al.   Cell Host & Microbe

Analyses of Intestinal Microbiota: Culture versus Sequencing: Figure 1

(2015) Andreas Hiergeist et al.   ILAR JOURNAL

Alleviation of salt stress in maize plant by co-inoculation of arbuscular mycorrhizal fungi and Methylobacterium oryzae CBMB20

(2015) Youngwook Lee et al.   Journal of the Korean Society for Applied Biological Chemistry

Linking Jasmonic Acid Signaling, Root Exudates, and Rhizosphere Microbiomes

(2015) Lilia C. Carvalhais et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The Plant Microbiome at Work

(2015) Klaus Schlaeppi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Functional overlap of the Arabidopsis leaf and root microbiota

(2015) Yang Bai et al.   NATURE

Host genotype is an important determinant of the cereal phyllosphere mycobiome

(2015) Rumakanta Sapkota et al.   NEW PHYTOLOGIST

Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

(2015) Devin Coleman-Derr et al.   NEW PHYTOLOGIST

Rhizobacterial volatiles and photosynthesis-related signals coordinateMYB72expression in Arabidopsis roots during onset of induced systemic resistance and iron-deficiency responses

(2015) Christos Zamioudis et al.   PLANT JOURNAL

Immunity to plant pathogens and iron homeostasis

(2015) Aude Aznar et al.   PLANT SCIENCE

Increasing aridity reduces soil microbial diversity and abundance in global drylands

(2015) Fernando T. Maestre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

(2015) S. L. Lebeis et al.   SCIENCE

Engineering Microbiomes to Improve Plant and Animal Health

(2015) U.G. Mueller et al.   TRENDS IN MICROBIOLOGY

Water regime history drives responses of soil Namib Desert microbial communities to wetting events

(2015) Aline Frossard et al.   Scientific Reports

Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes

(2015) Seth R. Bordenstein et al.   PLOS BIOLOGY

Salt tolerant Methylobacterium mesophilicum showed viable colonization abilities in the plant rhizosphere

(2015) Dilfuza Egamberdieva et al.   SAUDI JOURNAL OF BIOLOGICAL SCIENCES

Associations with rhizosphere bacteria can confer an adaptive advantage to plants

(2015) Cara H. Haney et al.   Nature Plants

Conservation of ethylene as a plant hormone over 450 million years of evolution

(2015) Chuanli Ju et al.   Nature Plants

Diversity of Nitrogen-Fixing Bacteria Associated with Switchgrass in the Native Tallgrass Prairie of Northern Oklahoma

(2014) Rahul A. Bahulikar et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Emergence Shapes the Structure of the Seed Microbiota

(2014) Matthieu Barret et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Synthetic microbial communities

(2014) Tobias Großkopf et al.   CURRENT OPINION IN MICROBIOLOGY

Microbe–microbe interactions determine oomycete and fungal host colonization

(2014) Eric Kemen   CURRENT OPINION IN PLANT BIOLOGY

β-Glucosidase BGLU42 is a MYB72-dependent key regulator of rhizobacteria-induced systemic resistance and modulates iron deficiency responses inArabidopsisroots

(2014) Christos Zamioudis et al.   NEW PHYTOLOGIST

Cross-Family Translational Genomics of Abiotic Stress-Responsive Genes between Arabidopsis and Medicago truncatula

(2014) Daejin Hyung et al.   PLoS One

Structure, Composition and Metagenomic Profile of Soil Microbiomes Associated to Agricultural Land Use and Tillage Systems in Argentine Pampas

(2014) Belén Carbonetto et al.   PLoS One

Analysis of Plant-Bacteria Interactions in Their Native Habitat: Bacterial Communities Associated with Wild Tobacco Are Independent of Endogenous Jasmonic Acid Levels and Developmental Stages

(2014) Rakesh Santhanam et al.   PLoS One

Change in deep soil microbial communities due to long-term fertilization

(2014) Chenhua Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil fertility is associated with fungal and bacterial richness, whereas pH is associated with community composition in polar soil microbial communities

(2014) Steven D. Siciliano et al.   SOIL BIOLOGY & BIOCHEMISTRY

Phyllosphere Microbiota Composition and Microbial Community Transplantation on Lettuce Plants Grown Indoors

(2014) T. R. Williams et al.   mBio

Niche and host-associated functional signatures of the root surface microbiome

(2014) Maya Ofek-Lalzar et al.   Nature Communications

A Synthetic Community Approach Reveals Plant Genotypes Affecting the Phyllosphere Microbiota

(2014) Natacha Bodenhausen et al.   PLoS Genetics

Effect of the soil type on the microbiome in the rhizosphere of field-grown lettuce

(2014) Susanne Schreiter et al.   Frontiers in Microbiology

A survey of the microbial community in the rhizosphere of two dominant shrubs of the Negev Desert highlands, Zygophyllum dumosum (Zygophyllaceae) and Atriplex halimus (Amaranthaceae), using cultivation-dependent and cultivation-independent methods

(2013) Drora Kaplan et al.   AMERICAN JOURNAL OF BOTANY

Chemical Signaling Between Plants and Plant-Pathogenic Bacteria

(2013) Vittorio Venturi et al.   Annual Review of Phytopathology

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Cytokinin-producing, plant growth-promoting rhizobacteria that confer resistance to drought stress in Platycladus orientalis container seedlings

(2013) Fangchun Liu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Baseline survey of the anatomical microbial ecology of an important food plant: Solanum lycopersicum (tomato)

(2013) Andrea R Ottesen et al.   BMC MICROBIOLOGY

Homeostasis in Intestinal Epithelium Is Orchestrated by the Circadian Clock and Microbiota Cues Transduced by TLRs

(2013) Atish Mukherji et al.   CELL

The Role of Bacterial Biofilms and Surface Components in Plant-Bacterial Associations

(2013) Pablo Bogino et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Relative contributions of plant traits and soil microbial properties to mountain grassland ecosystem services

(2013) Karl Grigulis et al.   JOURNAL OF ECOLOGY

Bacteria with ACC deaminase can promote plant growth and help to feed the world

(2013) Bernard R. Glick   MICROBIOLOGICAL RESEARCH

Do strigolactones contribute to plant defence?

(2013) Rocío Torres-Vera et al.   MOLECULAR PLANT PATHOLOGY

Salicylic acid: an old hormone up to new tricks

(2013) Jon Lucas Boatwright et al.   MOLECULAR PLANT PATHOLOGY

Formation of the Unusual Semivolatile Diterpene Rhizathalene by the Arabidopsis Class I Terpene Synthase TPS08 in the Root Stele Is Involved in Defense against Belowground Herbivory

(2013) M. M. Vaughan et al.   PLANT CELL

Unraveling Root Developmental Programs Initiated by Beneficial Pseudomonas spp. Bacteria

(2013) C. Zamioudis et al.   PLANT PHYSIOLOGY

Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana

(2013) Natacha Bodenhausen et al.   PLoS One

Activation of the Jasmonic Acid Plant Defence Pathway Alters the Composition of Rhizosphere Bacterial Communities

(2013) Lilia C. Carvalhais et al.   PLoS One

Host Genotype Shapes the Foliar Fungal Microbiome of Balsam Poplar (Populus balsamifera)

(2013) Miklós Bálint et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nonlegumes Respond to Rhizobial Nod Factors by Suppressing the Innate Immune Response

(2013) Y. Liang et al.   SCIENCE

Seasonal variation in functional properties of microbial communities in beech forest soil

(2013) Marianne Koranda et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial enzymatic responses to drought and to nitrogen addition in a southern California grassland

(2013) Charlotte J. Alster et al.   SOIL BIOLOGY & BIOCHEMISTRY

Root exudates: the hidden part of plant defense

(2013) Ulrike Baetz et al.   TRENDS IN PLANT SCIENCE

Abiotic drivers and plant traits explain landscape-scale patterns in soil microbial communities

(2012) Franciska T. de Vries et al.   ECOLOGY LETTERS

Culturing captures members of the soil rare biosphere

(2012) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Increased temperature and altered summer precipitation have differential effects on biological soil crusts in a dryland ecosystem

(2012) Shannon L. Johnson et al.   GLOBAL CHANGE BIOLOGY

Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce

(2012) Gurdeep Rastogi et al.   ISME Journal

The role of flavonoids in root-rhizosphere signalling: opportunities and challenges for improving plant-microbe interactions

(2012) S. Hassan et al.   JOURNAL OF EXPERIMENTAL BOTANY

Auxin influences strigolactones in pea mycorrhizal symbiosis

(2012) E. Foo   JOURNAL OF PLANT PHYSIOLOGY

Cytokinins Act Synergistically with Salicylic Acid to Activate Defense Gene Expression in Rice

(2012) Chang-Jie Jiang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Dynamics of Seed-Borne Rice Endophytes on Early Plant Growth Stages

(2012) Pablo R. Hardoim et al.   PLoS One

A Drought Resistance-Promoting Microbiome Is Selected by Root System under Desert Farming

(2012) Ramona Marasco et al.   PLoS One

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

(2012) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Symbiotic View of Life: We Have Never Been Individuals

(2012) Scott F. Gilbert et al.   QUARTERLY REVIEW OF BIOLOGY

Severe drought conditions modify the microbial community structure, size and activity in amended and unamended soils

(2012) S. Hueso et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil pH drives the spatial distribution of bacterial communities along elevation on Changbai Mountain

(2012) Congcong Shen et al.   SOIL BIOLOGY & BIOCHEMISTRY

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

(2012) Joyce E. Loper et al.   PLoS Genetics

Functional Analysis of NopM, a Novel E3 Ubiquitin Ligase (NEL) Domain Effector of Rhizobium sp. Strain NGR234

(2012) Da-Wei Xin et al.   PLoS Pathogens

The Multifactorial Basis for Plant Health Promotion by Plant-Associated Bacteria

(2011) Young Cheol Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Influence of Precipitation on Soil and Foliar Nutrients Across Nine Costa Rican Forests

(2011) Silvia Alvarez-Clare et al.   BIOTROPICA

The Effect of Soil Texture on Richness and Diversity of Bacterial Communities

(2011) Jessica Furrer Chau et al.   ENVIRONMENTAL FORENSICS

The bacterial biogeography of British soils

(2011) Robert I. Griffiths et al.   ENVIRONMENTAL MICROBIOLOGY

Soil characteristics more strongly influence soil bacterial communities than land-use type

(2011) Eiko E. Kuramae et al.   FEMS MICROBIOLOGY ECOLOGY

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

(2011) Claudia Knief et al.   ISME Journal

Culture-dependent and culture-independent assessment of bacteria in the apple phyllosphere

(2011) E. Yashiro et al.   JOURNAL OF APPLIED MICROBIOLOGY

Interplay of flg22-induced defence responses and nodulation in Lotus japonicus

(2011) Miguel Lopez-Gomez et al.   JOURNAL OF EXPERIMENTAL BOTANY

Bacterial Communities Associated with Chenopodium album and Stellaria media Seeds from Arable Soils

(2011) Leonard S. van Overbeek et al.   MICROBIAL ECOLOGY

Modulation of Host Immunity by Beneficial Microbes

(2011) Christos Zamioudis et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Molecular activities, biosynthesis and evolution of triterpenoid saponins

(2011) Jörg M. Augustin et al.   PHYTOCHEMISTRY

Culture-Based Assessment of Microbial Communities in Soil Suppressive to Potato Common Scab

(2011) Qingxiao Meng et al.   PLANT DISEASE

Microbial Communities Associated with Potato Common Scab-Suppressive Soil Determined by Pyrosequencing Analyses

(2011) Noah Rosenzweig et al.   PLANT DISEASE

Soil Microorganisms Mediating Phosphorus Availability Update on Microbial Phosphorus

(2011) A. E. Richardson et al.   PLANT PHYSIOLOGY

The synthetic strigolactone GR24 influences the growth pattern of phytopathogenic fungi

(2011) Evgenia Dor et al.   PLANTA

Conservation and Diversity of Seed Associated Endophytes in Zea across Boundaries of Evolution, Ethnography and Ecology

(2011) David Johnston-Monje et al.   PLoS One

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Metaorganisms as the new frontier

(2011) Thomas C.G. Bosch et al.   ZOOLOGY

Directed Culturing of Microorganisms Using Metatranscriptomics

(2011) L. Bomar et al.   mBio

Differential Growth Responses of Soil Bacterial Taxa to Carbon Substrates of Varying Chemical Recalcitrance

(2011) Katherine C. Goldfarb et al.   Frontiers in Microbiology

Temporal Dynamics in Soil Oxygen and Greenhouse Gases in Two Humid Tropical Forests

(2010) Daniel Liptzin et al.   ECOSYSTEMS

Linking bacterial identities and ecosystem processes: can ‘omic’ analyses be more than the sum of their parts?

(2010) Sergio E. Morales et al.   FEMS MICROBIOLOGY ECOLOGY

Effects of soil type and farm management on soil ecological functional genes and microbial activities

(2010) Jennifer R Reeve et al.   ISME Journal

Structural and Functional Analysis of the Type III Secretion System from Pseudomonas fluorescens Q8r1-96

(2010) D. V. Mavrodi et al.   JOURNAL OF BACTERIOLOGY

Linkages of plant traits to soil properties and the functioning of temperate grassland

(2010) Kate H. Orwin et al.   JOURNAL OF ECOLOGY

Soil Microbial Abundance and Diversity Along a Low Precipitation Gradient

(2010) Ami Bachar et al.   MICROBIAL ECOLOGY

Maize Leaf Epiphytic Bacteria Diversity Patterns Are Genetically Correlated with Resistance to Fungal Pathogen Infection

(2010) Peter Balint-Kurti et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Genetic evidence for auxin involvement in arbuscular mycorrhiza initiation

(2010) Meredith T. Hanlon et al.   NEW PHYTOLOGIST

Release of plant-borne flavonoids into the rhizosphere and their role in plant nutrition

(2010) Stefano Cesco et al.   PLANT AND SOIL

Innate Immune Responses Activated in Arabidopsis Roots by Microbe-Associated Molecular Patterns

(2010) Y. A. Millet et al.   PLANT CELL

Host-microbial symbiosis in the vertebrate gastrointestinal tract and the Lactobacillus reuteri paradigm

(2010) J. Walter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional patterns in both host and bacterium underlie a daily rhythm of anatomical and metabolic change in a beneficial symbiosis

(2010) A. M. Wier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Adaptation via Symbiosis: Recent Spread of a Drosophila Defensive Symbiont

(2010) J. Jaenike et al.   SCIENCE

Soil texture affects soil microbial and structural recovery during grassland restoration

(2010) Elizabeth M. Bach et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plant genotype strongly modifies the structure and growth of maize rhizosphere microbial communities

(2010) Manuel Aira et al.   SOIL BIOLOGY & BIOCHEMISTRY

Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil

(2010) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

The evolution of animals and plants via symbiosis with microorganisms

(2010) Eugene Rosenberg et al.   Environmental Microbiology Reports

Auxin and Plant-Microbe Interactions

(2010) S. Spaepen et al.   Cold Spring Harbor Perspectives in Biology

Alleviation of salt stress by plant growth regulators and IAA producing bacteria in wheat

(2009) Dilfuza Egamberdieva   ACTA PHYSIOLOGIAE PLANTARUM

Water for Agriculture: Maintaining Food Security under Growing Scarcity

(2009) Mark W. Rosegrant et al.   Annual Review of Environment and Resources

A Renaissance of Elicitors: Perception of Microbe-Associated Molecular Patterns and Danger Signals by Pattern-Recognition Receptors

(2009) Thomas Boller et al.   Annual Review of Plant Biology

Soil Microbial Community Responses to Multiple Experimental Climate Change Drivers

(2009) H. F. Castro et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Adaptation of soil microbial communities to temperature: comparison of fungi and bacteria in a laboratory experiment

(2009) GEMA BÁRCENAS-MORENO et al.   GLOBAL CHANGE BIOLOGY

Exogenous glucosinolate produced by Arabidopsis thaliana has an impact on microbes in the rhizosphere and plant roots

(2009) Mélanie Bressan et al.   ISME Journal

Linking Microbial Community Structure and Function to Seasonal Differences in Soil Moisture and Temperature in a Chihuahuan Desert Grassland

(2009) Colin W. Bell et al.   MICROBIAL ECOLOGY

The Absence of Nops Secretion inSinorhizobium frediiHH103 IncreasesGmPR1Expression in Williams Soybean

(2009) Francisco Javier López-Baena et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Networking by small-molecule hormones in plant immunity

(2009) Corné M J Pieterse et al.   Nature Chemical Biology

De novo biosynthesis of defense root exudates in response to Fusarium attack in barley

(2009) Arnaud Lanoue et al.   NEW PHYTOLOGIST

Rhizosphere bacterial communities associated with disease suppressiveness stages of take-all decline in wheat monoculture

(2009) H. Sanguin et al.   NEW PHYTOLOGIST

Priming of plant innate immunity by rhizobacteria and β-aminobutyric acid: differences and similarities in regulation

(2009) Sjoerd Van der Ent et al.   NEW PHYTOLOGIST

Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection

(2009) M. Libault et al.   PLANT PHYSIOLOGY

Trichoderma virens, a Plant Beneficial Fungus, Enhances Biomass Production and Promotes Lateral Root Growth through an Auxin-Dependent Mechanism in Arabidopsis

(2009) H. A. Contreras-Cornejo et al.   PLANT PHYSIOLOGY

Community proteogenomics reveals insights into the physiology of phyllosphere bacteria

(2009) N. Delmotte et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Individuality in Bacteria

(2008) Carla J. Davidson et al.   Annual Review of Genetics

Phase and antigenic variation mediated by genome modifications

(2008) Florence Wisniewski-Dyé et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Synergistic interactions between the ACC deaminase-producing bacterium Pseudomonas putida UW4 and the AM fungus Gigaspora rosea positively affect cucumber plant growth

(2008) Elisa Gamalero et al.   FEMS MICROBIOLOGY ECOLOGY

Role of plant hormones in plant defence responses

(2008) Rajendra Bari et al.   PLANT MOLECULAR BIOLOGY

Pseudomonas fluorescens WCS374r-Induced Systemic Resistance in Rice against Magnaporthe oryzae Is Based on Pseudobactin-Mediated Priming for a Salicylic Acid-Repressible Multifaceted Defense Response

(2008) D. De Vleesschauwer et al.   PLANT PHYSIOLOGY

Ethylene: Fine-tuning plant growth and development by stimulation and inhibition of elongation

(2008) Jasper Dugardeyn et al.   PLANT SCIENCE

Differential response of the plant Medicago truncatula to its symbiont Sinorhizobium meliloti or an exopolysaccharide-deficient mutant

(2008) K. M. Jones et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Environmental and anthropogenic controls over bacterial communities in wetland soils

(2008) W. H. Hartman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease

(2008) S. Dai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Seasonal changes in the soil microbial community in a grassland plant diversity gradient four years after establishment

(2008) Maike Habekost et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil suppressiveness and functional diversity of the soil microflora in organic farming systems

(2008) Joeke Postma et al.   SOIL BIOLOGY & BIOCHEMISTRY

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plant nutrient-acquisition strategies change with soil age

(2008) H LAMBERS et al.   TRENDS IN ECOLOGY & EVOLUTION

Habitat selective factors influencing the structural composition and functional capacity of microbial communities in agricultural soils

(2007) S.A. Wakelin et al.   SOIL BIOLOGY & BIOCHEMISTRY

Type III secretion in plant growth-promoting Pseudomonas fluorescens SBW25

(2003) Gail M. Preston et al.   MOLECULAR MICROBIOLOGY