Plant Phenotypic Traits Eventually Shape Its Microbiota: A Common Garden Test

Vessel scaling in evergreen angiosperm leaves conforms with Murray's law and area-filling assumptions: implications for plant size, leaf size and cold tolerance

(2018) Sean M. Gleason et al.   NEW PHYTOLOGIST

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly

(2018) Kateryna Zhalnina et al.   Nature Microbiology

The Plant Microbiota: Systems-Level Insights and Perspectives

(2016) Daniel B. Müller et al.   Annual Review of Genetics

Diversity and functional traits of culturable microbiome members, including cyanobacteria in the rice phyllosphere

(2016) S. Venkatachalam et al.   PLANT BIOLOGY

Host genotype and age shape the leaf and root microbiomes of a wild perennial plant

(2016) Maggie R. Wagner et al.   Nature Communications

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

Host species identity, site and time drive temperate tree phyllosphere bacterial community structure

(2016) Isabelle Laforest-Lapointe et al.   Microbiome

Diversity and Composition of the Leaf Mycobiome of Beech (Fagus sylvatica) Are Affected by Local Habitat Conditions and Leaf Biochemistry

(2016) Martin Unterseher et al.   PLoS One

Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley

(2015) Davide Bulgarelli et al.   Cell Host & Microbe

High-Throughput Sequencing Reveals Drastic Changes in Fungal Communities in the Phyllosphere of Norway Spruce (Picea abies) Following Invasion of the Spruce Bud Scale (Physokermes piceae)

(2015) Audrius Menkis et al.   MICROBIAL ECOLOGY

Disentangling the factors shaping microbiota composition across the plant holobiont

(2015) Stéphane Hacquard   NEW PHYTOLOGIST

Host genotype is an important determinant of the cereal phyllosphere mycobiome

(2015) Rumakanta Sapkota et al.   NEW PHYTOLOGIST

Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

(2015) Devin Coleman-Derr et al.   NEW PHYTOLOGIST

Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees

(2015) Michaela Urbanová et al.   SOIL BIOLOGY & BIOCHEMISTRY

Symbiotic options for the conquest of land

(2015) Katie J. Field et al.   TRENDS IN ECOLOGY & EVOLUTION

Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromids

(2014) Lukasz Dziewit et al.   BMC GENOMICS

Exploring the transfer of recent plant photosynthates to soil microbes: mycorrhizal pathway vs direct root exudation

(2014) Christina Kaiser et al.   NEW PHYTOLOGIST

Biotic and Abiotic Properties Mediating Plant Diversity Effects on Soil Microbial Communities in an Experimental Grassland

(2014) Markus Lange et al.   PLoS One

Ecological Succession and Stochastic Variation in the Assembly of Arabidopsis thaliana Phyllosphere Communities

(2014) L. Maignien et al.   mBio

A Synthetic Community Approach Reveals Plant Genotypes Affecting the Phyllosphere Microbiota

(2014) Natacha Bodenhausen et al.   PLoS Genetics

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Host signature effect on plant root-associated microbiomes revealed through analyses of residentvs. active communities

(2013) Maya Ofek et al.   ENVIRONMENTAL MICROBIOLOGY

New insights into the structure and function of phyllosphere microbiota through high-throughput molecular approaches

(2013) Gurdeep Rastogi et al.   FEMS MICROBIOLOGY LETTERS

The Impact of Beneficial Plant-Associated Microbes on Plant Phenotypic Plasticity

(2013) Chooi-Hua Goh et al.   JOURNAL OF CHEMICAL ECOLOGY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana

(2013) Natacha Bodenhausen et al.   PLoS One

Host Genotype Shapes the Foliar Fungal Microbiome of Balsam Poplar (Populus balsamifera)

(2013) Miklós Bálint et al.   PLoS One

Water-Limiting Conditions Alter the Structure and Biofilm-Forming Ability of Bacterial Multispecies Communities in the Alfalfa Rhizosphere

(2013) Pablo Bogino et al.   PLoS One

Global Leaf Trait Relationships: Mass, Area, and the Leaf Economics Spectrum

(2013) J. L. D. Osnas et al.   SCIENCE

The interplay of stress and mowing disturbance for the intensity and importance of plant interactions in dry calcareous grasslands

(2012) Jean-Paul Maalouf et al.   ANNALS OF BOTANY

Cellulose utilization in forest litter and soil: identification of bacterial and fungal decomposers

(2012) Martina Štursová et al.   FEMS MICROBIOLOGY ECOLOGY

Microbial life in the phyllosphere

(2012) Julia A. Vorholt   NATURE REVIEWS MICROBIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Bacterial anoxygenic photosynthesis on plant leaf surfaces

(2012) Nof Atamna-Ismaeel et al.   Environmental Microbiology Reports

Functional Ecology of Free-Living Nitrogen Fixation: A Contemporary Perspective

(2011) Sasha C. Reed et al.   Annual Review of Ecology Evolution and Systematics

Phyllosphere bacterial communities of trichome-bearing and trichomeless Arabidopsis thaliana leaves

(2011) Eva E. Reisberg et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Geographical Location Determines the Population Structure in Phyllosphere Microbial Communities of a Salt-Excreting Desert Tree

(2011) Omri M. Finkel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Microbial rhodopsins on leaf surfaces of terrestrial plants

(2011) Nof Atamna-Ismaeel et al.   ENVIRONMENTAL MICROBIOLOGY

Novel methylotrophic isolates from lake sediment, description of Methylotenera versatilis sp. nov. and emended description of the genus Methylotenera

(2011) M. G. Kalyuzhnaya et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

(2011) Claudia Knief et al.   ISME Journal

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

(2011) B. D. Muegge et al.   SCIENCE

The Microbe-Free Plant: Fact or Artifact?

(2011) Laila P. Partida-Martínez et al.   Frontiers in Plant Science

Arbuscular Mycorrhiza: The Challenge to Understand the Genetics of the Fungal Partner

(2010) Ian R. Sanders et al.   Annual Review of Genetics

Both Leaf Properties and Microbe-Microbe Interactions Influence Within-Species Variation in Bacterial Population Diversity and Structure in the Lettuce (Lactuca Species) Phyllosphere

(2010) P. J. Hunter et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves

(2010) Amanda J. Redford et al.   ENVIRONMENTAL MICROBIOLOGY

Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere

(2010) Claudia Knief et al.   ISME Journal

Examining the global distribution of dominant archaeal populations in soil

(2010) Scott T Bates et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Plant genotype strongly modifies the structure and growth of maize rhizosphere microbial communities

(2010) Manuel Aira et al.   SOIL BIOLOGY & BIOCHEMISTRY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

The significance of phloem transport for the speed with which canopy photosynthesis and belowground respiration are linked

(2009) Maurizio Mencuccini et al.   NEW PHYTOLOGIST

Plant biomass, soil water content and soil N:P ratio regulating soil microbial functional diversity in a temperate steppe: A regional scale study

(2009) Zhanfeng Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Abundance and diversity of the phyllosphere bacterial communities of Mediterranean perennial plants that differ in leaf chemistry

(2008) Ram Kailash P. Yadav et al.   CHEMOECOLOGY

Phyllosphere microbiology with special reference to diversity and plant genotype

(2008) J.M. Whipps et al.   JOURNAL OF APPLIED MICROBIOLOGY

Diversity of Aerobic Methanotrophic Bacteria in a Permafrost Active Layer Soil of the Lena Delta, Siberia

(2008) Susanne Liebner et al.   MICROBIAL ECOLOGY

The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms

(2008) Jos M. Raaijmakers et al.   PLANT AND SOIL