Analysis of Plant-Bacteria Interactions in Their Native Habitat: Bacterial Communities Associated with Wild Tobacco Are Independent of Endogenous Jasmonic Acid Levels and Developmental Stages

Leaf-herbivore attack reduces carbon reserves and regrowth from the roots via jasmonate and auxin signaling

(2013) Ricardo A. R. Machado et al.   NEW PHYTOLOGIST

Dimethyl Disulfide Produced by the Naturally Associated Bacterium Bacillus sp B55 Promotes Nicotiana attenuata Growth by Enhancing Sulfur Nutrition

(2013) D. G. Meldau et al.   PLANT CELL

Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana

(2013) Natacha Bodenhausen et al.   PLoS One

Activation of the Jasmonic Acid Plant Defence Pathway Alters the Composition of Rhizosphere Bacterial Communities

(2013) Lilia C. Carvalhais et al.   PLoS One

The Effect of Primer Choice and Short Read Sequences on the Outcome of 16S rRNA Gene Based Diversity Studies

(2013) Jonas Ghyselinck et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phenotypic variation in Azospirillum brasilense Sp7 does not influence plant growth promotion effects

(2013) Victoria Volfson et al.   SOIL BIOLOGY & BIOCHEMISTRY

Distribution of culturable endophytic bacteria in aquatic plants and their potential for bioremediation in polluted waters

(2012) WM Chen et al.   Aquatic Biology

Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce

(2012) Gurdeep Rastogi et al.   ISME Journal

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

A life or death switch

(2012) Andrea A. Gust et al.   NATURE

Empoasca leafhoppers attack wild tobacco plants in a jasmonate-dependent manner and identify jasmonate mutants in natural populations

(2012) M. Kallenbach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biogeochemical plant–soil microbe feedback in response to climate warming in peatlands

(2012) Luca Bragazza et al.   Nature Climate Change

Culture-dependent and culture-independent diversity surveys target different bacteria: a case study in a freshwater sample

(2011) Ivone Vaz-Moreira et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Distinct Microbial Communities within the Endosphere and Rhizosphere of Populus deltoides Roots across Contrasting Soil Types

(2011) Neil R. Gottel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Living inside plants: bacterial endophytes

(2011) Barbara Reinhold-Hurek et al.   CURRENT OPINION IN PLANT BIOLOGY

Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species

(2011) O.-S. Kim et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Changes in spinach phylloepiphytic bacteria communities following minimal processing and refrigerated storage described using pyrosequencing of 16S rRNA amplicons

(2011) G. Lopez-Velasco et al.   JOURNAL OF APPLIED MICROBIOLOGY

Effects of rhizobial inoculation, cropping systems and growth stages on endophytic bacterial community of soybean roots

(2011) Yun Zeng Zhang et al.   PLANT AND SOIL

Revealing complexity and specificity in the activation of lipase-mediated oxylipin biosynthesis: a specific role of the Nicotiana attenuata GLA1 lipase in the activation of jasmonic acid biosynthesis in leaves and roots

(2011) GUSTAVO BONAVENTURE et al.   PLANT CELL AND ENVIRONMENT

Pithy Protection: Nicotiana attenuata's Jasmonic Acid-Mediated Defenses Are Required to Resist Stem-Boring Weevil Larvae

(2011) C. Diezel et al.   PLANT PHYSIOLOGY

Endophyte Microbiome Diversity in Micropropagated Atriplex canescens and Atriplex torreyi var griffithsii

(2011) Mary E. Lucero et al.   PLoS One

Comparative Analysis of Bacterial Communities in a Potato Field as Determined by Pyrosequencing

(2011) Özgül İnceoğlu et al.   PLoS One

Effects of Plant Genotype and Growth Stage on the Betaproteobacterial Communities Associated with Different Potato Cultivars in Two Fields

(2010) O. Inceoglu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Development and Validation of a Liquid Chromatography−Electrospray Ionization−Time-of-Flight Mass Spectrometry Method for Induced Changes inNicotiana attenuataLeaves during Simulated Herbivory

(2010) Emmanuel Gaquerel et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Effects of Jasmonic Acid, Ethylene, and Salicylic Acid Signaling on the Rhizosphere Bacterial Community ofArabidopsis thaliana

(2010) Rogier F. Doornbos et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Salicylate-mediated suppression of jasmonate-responsive gene expression in Arabidopsis is targeted downstream of the jasmonate biosynthesis pathway

(2010) Antonio Leon-Reyes et al.   PLANTA

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Different Lepidopteran Elicitors Account for Cross-Talk in Herbivory-Induced Phytohormone Signaling

(2009) C. Diezel et al.   PLANT PHYSIOLOGY

Transgenic tobacco revealing altered bacterial diversity in the rhizosphere during early plant development

(2008) Fernando D. Andreote et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Diversity of culturable actinomycetes in hyper-arid soils of the Atacama Desert, Chile

(2008) Chinyere K. Okoro et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Effects of plant genotype and growth stage on the structure of bacterial communities associated with potato (Solanum tuberosum L.)

(2008) Leo Van Overbeek et al.   FEMS MICROBIOLOGY ECOLOGY

Properties of bacterial endophytes and their proposed role in plant growth

(2008) Pablo R. Hardoim et al.   TRENDS IN MICROBIOLOGY

Bacterial endophytes: recent developments and applications

(2007) Robert P. Ryan et al.   FEMS MICROBIOLOGY LETTERS