The Cucurbita pepo seed microbiome: genotype-specific composition and implications for breeding

Bacterial populations in juvenile maize rhizospheres originate from both seed and soil

(2016) David Johnston-Monje et al.   PLANT AND SOIL

Terroir is a key driver of seed-associated microbial assemblages

(2015) Stephanie Klaedtke et al.   ENVIRONMENTAL MICROBIOLOGY

The plant microbiome explored: implications for experimental botany

(2015) Gabriele Berg et al.   JOURNAL OF EXPERIMENTAL BOTANY

Evaluation of a Barley Core Collection for Spot Form Net Blotch Reaction Reveals Distinct Genotype-Specific Pathogen Virulence and Host Susceptibility

(2015) A. Neupane et al.   PHYTOPATHOLOGY

Molecular Breeding Strategy and Challenges Towards Improvement of Blast Disease Resistance in Rice Crop

(2015) Sadegh Ashkani et al.   Frontiers in Plant Science

Emergence Shapes the Structure of the Seed Microbiota

(2014) Matthieu Barret et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biological control of bacterial spot disease and plant growth-promoting effects of lactic acid bacteria on pepper

(2014) Anupama Shrestha et al.   BIOCONTROL SCIENCE AND TECHNOLOGY

Bacterial networks and co-occurrence relationships in the lettuce root microbiota

(2014) Massimiliano Cardinale et al.   ENVIRONMENTAL MICROBIOLOGY

Root microbiome relates to plant host evolution in maize and other Poaceae

(2014) Marie-Lara Bouffaud et al.   ENVIRONMENTAL MICROBIOLOGY

Phenotypic and marker-assisted pyramiding of genes for resistance to zucchini yellow mosaic virus in oilseed pumpkin (Cucurbita pepo)

(2014) Martin Pachner et al.   PLANT BREEDING

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

The root microbiota—a fingerprint in the soil?

(2013) Aleklett Kristin et al.   PLANT AND SOIL

Pathogen and host genotype differently affect pathogen fitness through their effects on different life-history stages

(2012) Emily Bruns et al.   BMC EVOLUTIONARY BIOLOGY

Promotion of growth, health and stress tolerance of Styrian oil pumpkins by bacterial endophytes

(2012) Michael Fürnkranz et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Harnessing the rhizosphere microbiome through plant breeding and agricultural management

(2012) Matthew G. Bakker et al.   PLANT AND SOIL

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Emerging multi-pathogen disease caused by Didymella bryoniae and pathogenic bacteria on Styrian oil pumpkin

(2011) Martin Grube et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Forensic identification using skin bacterial communities

(2010) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Fruit Rots of Pumpkin: A Serious Threat to the Pumpkin Industry

(2009) Mohammad Babadoost et al.   PLANT DISEASE

Novel approaches in plant breeding for rhizosphere-related traits

(2008) Matthias Wissuwa et al.   PLANT AND SOIL

Multifaceted beneficial effects of rhizosphere microorganisms on plant health and productivity

(2008) Tyler J. Avis et al.   SOIL BIOLOGY & BIOCHEMISTRY