Host genotype is an important determinant of the cereal phyllosphere mycobiome

Resilience of the Natural Phyllosphere Microbiota of the Grapevine to Chemical and Biological Pesticides

(2014) Michele Perazzolli et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Plant traits and taxonomy drive host associations in tropical phyllosphere fungal communities

(2014) Steven W. Kembel et al.   Botany

Microbe–microbe interactions determine oomycete and fungal host colonization

(2014) Eric Kemen   CURRENT OPINION IN PLANT BIOLOGY

Fungal communities in wheat grain show significant co-existence patterns among species

(2014) M. Nicolaisen et al.   Fungal Ecology

Communities of fungal endophytes in tropical forest grasses: highly diverse host- and habitat generalists characterized by strong spatial structure

(2014) K. Lindsay Higgins et al.   Fungal Ecology

Fungicide Effects on Fungal Community Composition in the Wheat Phyllosphere

(2014) Ida Karlsson et al.   PLoS One

Relationships between phyllosphere bacterial communities and plant functional traits in a neotropical forest

(2014) S. W. Kembel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IPM Strategies and Their Dilemmas Including an Introduction to www.eurowheat.org

(2014) Lise Nistrup Jørgensen et al.   Journal of Integrative Agriculture

A Synthetic Community Approach Reveals Plant Genotypes Affecting the Phyllosphere Microbiota

(2014) Natacha Bodenhausen et al.   PLoS Genetics

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Host Genotype Shapes the Foliar Fungal Microbiome of Balsam Poplar (Populus balsamifera)

(2013) Miklós Bálint et al.   PLoS One

PNAS Plus: From the Cover: Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate

(2013) N. A. Bokulich et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

EMPeror: a tool for visualizing high-throughput microbial community data

(2013) Yoshiki Vázquez-Baeza et al.   GigaScience

Exploring the potential of symbiotic fungal endophytes in cereal disease suppression

(2012) Karen A. O’Hanlon et al.   BIOLOGICAL CONTROL

Fungal communities associated with durum wheat production system: A characterization by growth stage, plant organ and preceding crop

(2012) Vladimir Vujanovic et al.   CROP PROTECTION

Spatial variability of phyllosphere fungal assemblages: genetic distance predominates over geographic distance in a European beech stand (Fagus sylvatica)

(2012) Tristan Cordier et al.   Fungal Ecology

Characterization of microbial communities and fungal metabolites on field grown strawberries from organic and conventional production

(2012) Birgit Jensen et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Microbial life in the phyllosphere

(2012) Julia A. Vorholt   NATURE REVIEWS MICROBIOLOGY

The composition of phyllosphere fungal assemblages of European beech (Fagus sylvatica ) varies significantly along an elevation gradient

(2012) Tristan Cordier et al.   NEW PHYTOLOGIST

Summer season and long-term drought increase the richness of bacteria and fungi in the foliar phyllosphere ofQuercus ilexin a mixed Mediterranean forest

(2012) J. Peñuelas et al.   PLANT BIOLOGY

Rapid responses of soil microorganisms improve plant fitness in novel environments

(2012) J. A. Lau et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protection of Arabidopsis thaliana against Leaf-Pathogenic Pseudomonas syringae by Sphingomonas Strains in a Controlled Model System

(2011) Gerd Innerebner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

Risk assessment studies on succinate dehydrogenase inhibitors, the new weapons in the battle to control Septoria leaf blotch in wheat

(2011) BART A. FRAAIJE et al.   MOLECULAR PLANT PATHOLOGY

Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease

(2011) S. Greenblum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves

(2010) Amanda J. Redford et al.   ENVIRONMENTAL MICROBIOLOGY

Seasonal dynamics of the structure of epiphytic yeast communities

(2010) A. M. Glushakova et al.   MICROBIOLOGY

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

(2010) ANTHONY S. AMEND et al.   MOLECULAR ECOLOGY

An open source chimera checker for the fungal ITS region

(2010) R. H. NILSSON et al.   Molecular Ecology Resources

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Seasonally dynamic fungal communities in the Quercus macrocarpa phyllosphere differ between urban and nonurban environments

(2010) A. Jumpponen et al.   NEW PHYTOLOGIST

Spatiotemporal variation in the fungal community associated with wheat leaves showing symptoms similar to stagonospora nodorum blotch

(2009) Eva Blixt et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Effects of host plant environment and Ustilago maydis infection on the fungal endophyte community of maize (Zea mays)

(2008) Jean J. Pan et al.   NEW PHYTOLOGIST

Properties of bacterial endophytes and their proposed role in plant growth

(2008) Pablo R. Hardoim et al.   TRENDS IN MICROBIOLOGY