Host Genotype Shapes the Foliar Fungal Microbiome of Balsam Poplar (Populus balsamifera)

Spatial variability of phyllosphere fungal assemblages: genetic distance predominates over geographic distance in a European beech stand (Fagus sylvatica)

(2012) Tristan Cordier et al.   Fungal Ecology

Comparison of ITS1 and ITS2 rDNA in 454 sequencing of hyperdiverse fungal communities

(2012) Anna L. Bazzicalupo et al.   Fungal Ecology

Implications of Pyrosequencing Error Correction for Biological Data Interpretation

(2012) Matthew G. Bakker et al.   PLoS One

mvabund- anRpackage for model-based analysis of multivariate abundance data

(2012) Yi Wang et al.   Methods in Ecology and Evolution

Hidden Fungi, Emergent Properties: Endophytes and Microbiomes

(2011) Andrea Porras-Alfaro et al.   Annual Review of Phytopathology

A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences

(2011) David J Russell et al.   BMC BIOINFORMATICS

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities

(2011) R. Henrik Nilsson et al.   NEW PHYTOLOGIST

Exophiala sp. LHL08 reprograms Cucumis sativus to higher growth under abiotic stresses

(2011) Abdul L. Khan et al.   PHYSIOLOGIA PLANTARUM

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

(2010) Eva Bellemain et al.   BMC MICROBIOLOGY

An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology

(2010) R. Henrik Nilsson et al.   Fungal Ecology

Genomic diversity, population structure, and migration following rapid range expansion in the Balsam Poplar,Populus balsamifera

(2010) STEPHEN R. KELLER et al.   MOLECULAR ECOLOGY

Insidious effects of sequencing errors on perceived diversity in molecular surveys

(2010) Ian A. Dickie   NEW PHYTOLOGIST

Nucleotide diversity and linkage disequilibrium in balsam poplar (Populus balsamifera)

(2010) Matthew S. Olson et al.   NEW PHYTOLOGIST

454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

(2010) Leho Tedersoo et al.   NEW PHYTOLOGIST

Seasonally dynamic fungal communities in the Quercus macrocarpa phyllosphere differ between urban and nonurban environments

(2010) A. Jumpponen et al.   NEW PHYTOLOGIST

Fungal endophytes of native grasses decrease insect herbivore preference and performance

(2010) Kerri M. Crawford et al.   OECOLOGIA

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Antimicrobial activity of endophytic fungi associated with Orchidaceae in Brazil

(2009) Aline B.M. Vaz et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Low diversity and high host preference of ectomycorrhizal fungi in Western Amazonia, a neotropical biodiversity hotspot

(2009) Leho Tedersoo et al.   ISME Journal

Fungal-Fungal Associations Affect the Assembly of Endophyte Communities in Maize (Zea mays)

(2009) Jean J. Pan et al.   MICROBIAL ECOLOGY

Nitrogen form influences the response of Deschampsia antarctica to dark septate root endophytes

(2009) Rebecca Upson et al.   MYCORRHIZA

Evidence for alteration of fungal endophyte community assembly by host defense compounds

(2009) Megan Saunders et al.   NEW PHYTOLOGIST

Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperateQuercus macrocarpaphyllosphere

(2009) A. Jumpponen et al.   NEW PHYTOLOGIST

Fungal endophytes: diversity and functional roles

(2009) R. J. Rodriguez et al.   NEW PHYTOLOGIST

Enhanced assimilation rate and water use efficiency with latitude through increased photosynthetic capacity and internal conductance in balsam poplar (Populus balsamiferaL.)

(2009) RAJU Y. SOOLANAYAKANAHALLY et al.   PLANT CELL AND ENVIRONMENT

Effects of host plant environment and Ustilago maydis infection on the fungal endophyte community of maize (Zea mays)

(2008) Jean J. Pan et al.   NEW PHYTOLOGIST

Bioactive metabolites from the endophytic fungus Ampelomyces sp. isolated from the medicinal plant Urospermum picroides

(2008) Amal H. Aly et al.   PHYTOCHEMISTRY

Geographic locality and host identity shape fungal endophyte communities in cupressaceous trees

(2007) Michele T. Hoffman et al.