Incorporating Primer Amplification Efficiencies in Quantitative Reverse Transcription Polymerase Chain Reaction Experiments; Considerations for Differential Gene Expression Analyses in Zebrafish

Zebrafish her3 knockout impacts developmental and cancer-related gene signatures

(2023) Matthew R. Kent et al.   DEVELOPMENTAL BIOLOGY

Acute Developmental Toxicity of Panax notoginseng in Zebrafish Larvae

(2022) Rong-rong Wang et al.   Chinese Journal of Integrative Medicine

Long-term exposure of the binary mixture of cadmium and mercury damages the developed ovary of adult zebrafish

(2022) Utsav N. Patel et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Interference with zinc homeostasis and oxidative stress induction as probable mechanisms for cadmium-induced embryo-toxicity in zebrafish

(2022) Lina Chouchene et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Environmental relevant concentrations of triclosan affected developmental toxicity, oxidative stress, and apoptosis in zebrafish embryos

(2022) Fei Liu et al.   ENVIRONMENTAL TOXICOLOGY

Lenvatinib induces cardiac developmental toxicity in zebrafish embryos through regulation of Notch mediated‐oxidative stress generation

(2022) Jieping Liu et al.   ENVIRONMENTAL TOXICOLOGY

BMP3 is a novel locus involved in the causality of ocular coloboma

(2022) Sabrina C. Fox et al.   HUMAN GENETICS

The non-telomeric evolutionary trajectory of TRF2 in zebrafish reveals its specific roles in neurodevelopment and aging

(2022) Yilin Ying et al.   NUCLEIC ACIDS RESEARCH

Rrn3 gene knockout affects ethanol-induced locomotion in adult heterozygous zebrafish

(2022) Fei Li et al.   PSYCHOPHARMACOLOGY

Differential Molecular Responses of Zebrafish Larvae to Fluoxetine and Norfluoxetine

(2022) Pedro Rodrigues et al.   Water

Zebrafish Model-Based Assessment of Indoxyl Sulfate-Induced Oxidative Stress and Its Impact on Renal and Cardiac Development

(2022) Paul Wei-Hua Tang et al.   Antioxidants

Fgf8 dynamics and critical slowing down may account for the temperature independence of somitogenesis

(2022) Weiting Zhang et al.   Communications Biology

Assessment of 2-Pentadecyl-2-oxazoline Role on Lipopolysaccharide-Induced Inflammation on Early Stage Development of Zebrafish (Danio rerio)

(2022) Davide Di Paola et al.   Life-Basel

Developmental Cardiotoxicity and Hepatotoxicity of Flurbiprofen Axetil to Zebrafish Embryo

(2022) Yuping Wang et al.   ASSAY AND DRUG DEVELOPMENT TECHNOLOGIES

Neuroprotective effects of Tongtian oral liquid, a Traditional Chinese Medicine in the Parkinson's disease-induced zebrafish model

(2022) Shan Dongjie et al.   BIOMEDICINE & PHARMACOTHERAPY

A Vegfc-Emilin2a-Cxcl8a Signaling Axis Required for Zebrafish Cardiac Regeneration

(2022) Hadil El-Sammak et al.   CIRCULATION RESEARCH

Leukemia‐associated transcription factor mllt3 is important for primitive erythroid development in zebrafish embryogenesis

(2022) Giuseppe Germano et al.   DEVELOPMENTAL DYNAMICS

Combined effects of S-metolachlor and benoxacor on embryo development in zebrafish (Danio rerio)

(2022) Sihong Liu et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Developmental toxicity of glyphosate on embryo-larval zebrafish (Danio rerio)

(2022) Zhihui Liu et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Excessive selenium affects neural development and locomotor behavior of zebrafish embryos

(2022) Guang Zhao et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

The developmental toxicity and transcriptome analyses of zebrafish (Danio rerio) embryos exposed to carbon nanoparticles

(2022) Leilei Shi et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Dose Addition in the Induction of Craniofacial Malformations in Zebrafish Embryos Exposed to a Complex Mixture of Food-Relevant Chemicals with Dissimilar Modes of Action

(2022) Leo T.M. Van Der Ven et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

Perfluorooctane Sulfonamide (PFOSA) Induces Cardiotoxicity via Aryl Hydrocarbon Receptor Activation in Zebrafish

(2022) Honghong Chen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Comparative toxicity of [C8mim]Br and [C8py]Br in early developmental stages of zebrafish (Danio rerio) with focus on oxidative stress, apoptosis, and neurotoxicity

(2022) Huangyingzi Wang et al.   ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY

Slc38a9 Deficiency Induces Apoptosis and Metabolic Dysregulation and Leads to Premature Death in Zebrafish

(2022) Xiya Wu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Zebrafish Mutant Lines Reveal the Interplay between nr3c1 and nr3c2 in the GC-Dependent Regulation of Gene Transcription

(2022) Alberto Dinarello et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Negative Elongation Factor (NELF) Inhibits Premature Granulocytic Development in Zebrafish

(2022) Mengling Huang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

E2f4 is required for intestinal and otolith development in zebrafish

(2022) Xiaolin Jin et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Disruption of miR-18a Alters Proliferation, Photoreceptor Replacement Kinetics, Inflammatory Signaling, and Microglia/Macrophage Numbers During Retinal Regeneration in Zebrafish

(2022) Evin Magner et al.   MOLECULAR NEUROBIOLOGY

Inflammatory response in hematopoietic stem and progenitor cells triggered by activating SHP2 mutations evokes blood defects

(2022) Maja Solman et al.   eLife

Tollip‐deficient zebrafish display no abnormalities in development, organ morphology or gene expression in response to lipopolysaccharide

(2022) Lidia Wolińska‐Nizioł et al.   FEBS Open Bio

Cingulin b Is Required for Zebrafish Lateral Line Development Through Regulation of Mitogen-Activated Protein Kinase and Cellular Senescence Signaling Pathways

(2022) Yitong Lu et al.   Frontiers in Molecular Neuroscience

Dopamine Homeostasis Imbalance and Dopamine Receptors-Mediated AC/cAMP/PKA Pathway Activation are Involved in Aconitine-Induced Neurological Impairment in Zebrafish and SH-SY5Y Cells

(2022) Jie Zhou et al.   Frontiers in Pharmacology

Reduction in Toxicity of Polystyrene Nanoplastics Combined with Phenanthrene through Binding of Jellyfish Mucin with Nanoplastics

(2022) Sun Woo Geum et al.   Nanomaterials

Transcriptomic and Long-Term Behavioral Deficits Associated with Developmental 3.5 GHz Radiofrequency Radiation Exposures in Zebrafish

(2022) Subham Dasgupta et al.   Environmental Science & Technology Letters

Accumulation of acetaldehyde in aldh2.1 zebrafish causes increased retinal angiogenesis and impaired glucose metabolism

(2022) David Philipp Wohlfart et al.   Redox Biology

Polystyrene nanoplastics aggravated ecotoxicological effects of polychlorinated biphenyls in on zebrafish (Danio rerio) embryos

(2022) Yizheng Li et al.   Geoscience Frontiers

Assessment of the Preventive Effect of L-carnitine on Post-statin Muscle Damage in a Zebrafish Model

(2022) Joanna Niedbalska-Tarnowska et al.   Cells

The Inhibitory Effect of Selected D2 Dopaminergic Receptor Agonists on VEGF-Dependent Neovascularization in Zebrafish Larvae: Potential New Therapy in Ophthalmic Diseases

(2022) Natalia Kasica et al.   Cells

Recapitulation of Retinal Damage in Zebrafish Larvae Infected with Zika Virus

(2022) Adolfo Luis Almeida Maleski et al.   Cells

Effect of Acute Exposure to the Ionic Liquid 1-Methyl-3-octylimidazolium Chloride on the Embryonic Development and Larval Thyroid System of Zebrafish

(2022) Weikai Ding et al.   Animals

Claudin-5a is essential for the functional formation of both zebrafish blood-brain barrier and blood-cerebrospinal fluid barrier

(2022) Yanyu Li et al.   Fluids and Barriers of the CNS

Loss of circadian rhythmicity in bdnf knockout zebrafish larvae

(2022) Ylenia D’Agostino et al.   iScience

Pentachloronitrobenzene Reduces the Proliferative Capacity of Zebrafish Embryonic Cardiomyocytes via Oxidative Stress

(2022) Guoqiang Fan et al.   Toxics

Characterization of Developmental Neurobehavioral Toxicity in a Zebrafish MPTP-Induced Model: A Novel Mechanism Involving Anemia

(2022) Haojia Dong et al.   ACS Chemical Neuroscience

Dominant-acting CSF1R variants cause microglial depletion and altered astrocytic phenotype in zebrafish and adult-onset leukodystrophy

(2022) Woutje M. Berdowski et al.   ACTA NEUROPATHOLOGICA

Exposure of zebrafish embryos to sodium propionate disrupts circadian behavior and glucose metabolism-related development

(2022) Yi-xin Xu et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Synergistic protective effects of folic acid and resveratrol against fine particulate matter-induced heart malformations in zebrafish embryos

(2022) Jin Chen et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Low trifloxystrobin-tebuconazole concentrations induce cardiac and developmental toxicity in zebrafish by regulating notch mediated‐oxidative stress generation

(2022) Kun Jia et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

N-methyl-N-nitrosourea induces zebrafish anomalous angiogenesis through Wnt/β-catenin pathway

(2022) Saifang Fu et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Synergistic prostaglandin E synthesis by myeloid and endothelial cells promotes fetal hematopoietic stem cell expansion in vertebrates

(2022) Pietro Cacialli et al.   EMBO JOURNAL

Optogenetic control of YAP cellular localisation and function

(2022) Pearlyn J Y Toh et al.   EMBO REPORTS

Oxidative Stress and Apoptosis in Bisphenol AF–Induced Neurotoxicity in Zebrafish Embryos

(2022) Eric Gyimah et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Multi-biomarker approach and IBR index to evaluate the effects of bisphenol A on embryonic stages of zebrafish (Danio rerio)

(2022) Gerardo Heredia-García et al.   ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY

Effects of di-(2-ethylhexyl) phthalate (DEHP) on behavior and dopamine signaling in zebrafish (Danio rerio)

(2022) Wenlong Huang et al.   ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY

Cylindrospermopsin induces oocyte maturation and disrupts gene expression in zebrafish ovarian follicles

(2022) Adriana Carvalho Natal de Moraes et al.   ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY

Cardiotoxicity of Zebrafish Induced by 6-Benzylaminopurine Exposure and Its Mechanism

(2022) Mengying Yang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Nitrobenzoate-Derived Compound X8 Impairs Vascular Development in Zebrafish

(2022) Chien-Chih Chiu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

VARS2 Depletion Leads to Activation of the Integrated Stress Response and Disruptions in Mitochondrial Fatty Acid Oxidation

(2022) Elham Kayvanpour et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

An Association between Insulin Resistance and Neurodegeneration in Zebrafish Larval Model (Danio rerio)

(2022) Nurliyana Najwa Md Razip et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Interleukin-10 regulates goblet cell numbers through Notch signaling in the developing zebrafish intestine

(2022) Rodrigo A. Morales et al.   Mucosal Immunology

Evaluation of Resveratrol and Piceatannol Anticonvulsant Potential in Adult Zebrafish (Danio rerio)

(2022) Jefferson Pedroso et al.   NEUROCHEMICAL RESEARCH

Tetramethylpyrazine Protects Endothelial Injury and Antithrombosis via Antioxidant and Antiapoptosis in HUVECs and Zebrafish

(2022) Yafang Zhang et al.   Oxidative Medicine and Cellular Longevity

Transgenerational effects of zinc in zebrafish following early life stage exposure

(2022) Jia-Lang Zheng et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Identification of Transcription Factor Binding Sites by Cleavage Under Target and Release Using Nuclease in Zebrafish

(2022) Radwa Barakat et al.   Zebrafish

HOX epimutations driven by maternal SMCHD1/LRIF1 haploinsufficiency trigger homeotic transformations in genetically wildtype offspring

(2022) Shifeng Xue et al.   Nature Communications

The Effects of Persimmon (Diospyros kaki L.f.) Oligosaccharides on Features of the Metabolic Syndrome in Zebrafish

(2022) Wanlapa Nuankaew et al.   Nutrients

Cdkl5 mutant zebrafish shows skeletal and neuronal alterations mimicking human CDKL5 deficiency disorder

(2022) Tatiana Varela et al.   Scientific Reports

Knockdown of myorg leads to brain calcification in zebrafish

(2022) Miao Zhao et al.   Molecular Brain

Mutation of foxl1 Results in Reduced Cartilage Markers in a Zebrafish Model of Otosclerosis

(2022) Alexia Hawkey-Noble et al.   Genes

Aqueous Extract of Psiloxylon mauritianum, Rich in Gallic Acid, Prevents Obesity and Associated Deleterious Effects in Zebrafish

(2022) Batoul Ghaddar et al.   Antioxidants

A nop56 Zebrafish Loss-of-Function Model Exhibits a Severe Neurodegenerative Phenotype

(2022) Ana Quelle-Regaldie et al.   Biomedicines

Estrogens revert neutrophil hyperplasia by inhibiting Hif1α-cMyb pathway in zebrafish myelodysplastic syndromes models

(2022) Xuexiao Li et al.   Cell Death Discovery

Fluoxetine modifies circadian rhythm by reducing melatonin content in zebrafish

(2022) Mei-li Wei et al.   BIOMEDICINE & PHARMACOTHERAPY

Transcriptome profiling reveals toxicity mechanisms following sertraline exposure in the brain of juvenile zebrafish (Danio rerio)

(2022) Huiting Yang et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Size-dependent seizurogenic effect of polystyrene microplastics in zebrafish embryos

(2022) Soomin Jeong et al.   JOURNAL OF HAZARDOUS MATERIALS

Efficiency Correction Is Required for Accurate Quantitative PCR Analysis and Reporting

(2021) Jan M Ruijter et al.   CLINICAL CHEMISTRY

Ddx41 inhibition of DNA damage signaling permits erythroid progenitor expansion in zebrafish

(2021) Joshua T. Weinreb et al.   HAEMATOLOGICA

Vesicular monoamine transporter 2 (SLC18A2) regulates monoamine turnover and brain development in zebrafish

(2021) Diego Baronio et al.   Acta Physiologica

Web-based LinRegPCR: application for the visualization and analysis of (RT)-qPCR amplification and melting data

(2021) Andreas Untergasser et al.   BMC BIOINFORMATICS

Heme oxygenase limits Mycobacterium marinum infection‐induced detrimental ferrostatin‐sensitive cell death in zebrafish

(2021) Kaiming Luo et al.   FEBS Journal

Abnormal brain development of monoamine oxidase mutant zebrafish and impaired social interaction of heterozygous fish

(2021) Diego Baronio et al.   Disease Models & Mechanisms

2,4-dichlorophenol exposure induces lipid accumulation and reactive oxygen species formation in zebrafish embryos

(2021) Kazumi Sunny Tsukazawa et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Photoaging enhanced the adverse effects of polyamide microplastics on the growth, intestinal health, and lipid absorption in developing zebrafish

(2021) Xingli Zhang et al.   ENVIRONMENT INTERNATIONAL

Severe hypoxia exposure inhibits larval brain development but does not affect the capacity to mount a cortisol stress response in zebrafish

(2021) Kristina V. Mikloska et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Identification of key genes involved in recovery from spinal cord injury in adult zebrafish

(2021) Xue Yao et al.   Neural Regeneration Research

Evaluation of qPCR reference genes in GH-overexpressing transgenic zebrafish (Danio rerio)

(2020) Gabriela T. Rassier et al.   Scientific Reports

Characterization of Hspb8 in Zebrafish

(2020) Magda Dubińska-Magiera et al.   Cells

Using synthetic oligonucleotides as standards in probe-based qPCR

(2018) Jillian Conte et al.   BIOTECHNIQUES

Toxicity Evaluation and Biomarker Selection with Validated Reference Gene in Embryonic Zebrafish Exposed to Mitoxantrone

(2018) Lili Liu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

A Basic Guide to Real Time PCR in Microbial Diagnostics: Definitions, Parameters, and Everything

(2017) Petr Kralik et al.   Frontiers in Microbiology

Genome-wide identification of suitable zebrafishDanio rerioreference genes for normalization of gene expression data by RT-qPCR

(2016) H. Xu et al.   JOURNAL OF FISH BIOLOGY

Expressed Repeat Elements Improve RT-qPCR Normalization across a Wide Range of Zebrafish Gene Expression Studies

(2014) Suzanne Vanhauwaert et al.   PLoS One

Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

(2012) Jian Ye et al.   BMC BIOINFORMATICS

Identification of housekeeping genes suitable for gene expression analysis in the zebrafish

(2011) Raffaella Casadei et al.   GENE EXPRESSION PATTERNS

Comparison of different standards for real-time PCR-based absolute quantification

(2010) S. Dhanasekaran et al.   JOURNAL OF IMMUNOLOGICAL METHODS

The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments

(2009) S. A. Bustin et al.   CLINICAL CHEMISTRY

Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data

(2009) J. M. Ruijter et al.   NUCLEIC ACIDS RESEARCH

Characterization of housekeeping genes in zebrafish: male-female differences and effects of tissue type, developmental stage and chemical treatment

(2008) Amy T McCurley et al.   BMC MOLECULAR BIOLOGY