Zebrafish her3 knockout impacts developmental and cancer-related gene signatures

MyoD is a 3D genome structure organizer for muscle cell identity

(2022) Ruiting Wang et al.   Nature Communications

SIX1 reprograms myogenic transcription factors to maintain the rhabdomyosarcoma undifferentiated state

(2022) Jessica Y. Hsu et al.   Cell Reports

Evidence of pioneer factor activity of an oncogenic fusion transcription factor

(2021) Benjamin D. Sunkel et al.   iScience

SOX10: 20 years of phenotypic plurality and current understanding of its developmental function

(2021) Veronique Pingault et al.   JOURNAL OF MEDICAL GENETICS

OLIG2 is a marker of the fusion protein-driven neurodevelopmental transcriptional signature in alveolar rhabdomyosarcoma

(2019) Shyam S. Raghavan et al.   HUMAN PATHOLOGY

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

The b-HLH transcription factor Hes3 participates in neural plate border formation by interfering with Wnt/β-catenin signaling

(2018) Chang-Soo Hong et al.   DEVELOPMENTAL BIOLOGY

PAX3-FOXO1 transgenic zebrafish models identify HES3 as a mediator of rhabdomyosarcoma tumorigenesis

(2018) Genevieve C Kendall et al.   eLife

HIC1 deletion promotes breast cancer progression by activating tumor cell/fibroblast crosstalk

(2018) Yingying Wang et al.   JOURNAL OF CLINICAL INVESTIGATION

LRH-1 senses signaling from phosphatidylcholine to regulate the expansion growth of digestive organs via synergy with Wnt/β-catenin signaling in zebrafish

(2017) Gang Zhai et al.   Journal of Genetics and Genomics

Increased functional protein expression using nucleotide sequence features enriched in highly expressed genes in zebrafish

(2015) Eric J. Horstick et al.   NUCLEIC ACIDS RESEARCH

The STAT3-Ser/Hes3 signaling axis in cancer

(2014) Steven Poser   Frontiers in Bioscience-Landmark

Hes3 Is Expressed in the Adult Pancreatic Islet and Regulates Gene Expression, Cell Growth, and Insulin Release

(2014) Jimmy Masjkur et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A Streamlined CRISPR Pipeline to Reliably Generate Zebrafish Frameshifting Alleles

(2014) Jared Coffin Talbot et al.   Zebrafish

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Hes3 regulates cell number in cultures from glioblastoma multiforme with stem cell characteristics

(2013) Deric M. Park et al.   Scientific Reports

The STAT3-Ser/Hes3 signaling axis: an emerging regulator of endogenous regeneration and cancer growth

(2013) Steven W. Poser et al.   Frontiers in Physiology

TMBIM3/GRINA is a novel unfolded protein response (UPR) target gene that controls apoptosis through the modulation of ER calcium homeostasis

(2012) D Rojas-Rivera et al.   CELL DEATH AND DIFFERENTIATION

HES6 enhances the motility of alveolar rhabdomyosarcoma cells

(2012) Caroline M Wickramasinghe et al.   EXPERIMENTAL CELL RESEARCH

Hes4 Controls Proliferative Properties of Neural Stem Cells During Retinal Ontogenesis

(2012) Warif El Yakoubi et al.   STEM CELLS

Hes6 is required for actin cytoskeletal organization in differentiating C2C12 myoblasts

(2011) Caroline M.P. Malone et al.   EXPERIMENTAL CELL RESEARCH

Roles of Hes genes in neural development

(2010) Ryoichiro Kageyama et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

Zebrafish Pou5f1-dependent transcriptional networks in temporal control of early development

(2010) Daria Onichtchouk et al.   Molecular Systems Biology

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Targeting neural precursors in the adult brain rescues injured dopamine neurons

(2009) A. Androutsellis-Theotokis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA