Structural basis of Streptomyces transcription activation by zinc uptake regulator

Structural basis of ribosomal RNA transcription regulation

(2021) Yeonoh Shin et al.   Nature Communications

Transcription activation by a sliding clamp

(2021) Jing Shi et al.   Nature Communications

Structural visualization of transcription activated by a multidrug-sensing MerR family regulator

(2021) Yang Yang et al.   Nature Communications

Zur: Zinc-Sensing Transcriptional Regulator in a Diverse Set of Bacterial Species

(2021) Divya Kandari et al.   Pathogens

3D variability analysis: Resolving continuous flexibility and discrete heterogeneity from single particle cryo-EM

(2021) Ali Punjani et al.   JOURNAL OF STRUCTURAL BIOLOGY

Structural basis for zinc-induced activation of a zinc uptake transcriptional regulator

(2021) Fenmei Liu et al.   NUCLEIC ACIDS RESEARCH

Structural basis of transcription activation by the global regulator Spx

(2021) Jing Shi et al.   NUCLEIC ACIDS RESEARCH

Lysine acetylation of the housekeeping sigma factor enhances the activity of the RNA polymerase holoenzyme

(2020) Ji-Eun Kim et al.   NUCLEIC ACIDS RESEARCH

Visualization of two architectures in class-II CAP-dependent transcription activation

(2020) Wei Shi et al.   PLOS BIOLOGY

CueR activates transcription through a DNA distortion mechanism

(2020) Chengli Fang et al.   Nature Chemical Biology

UCSF ChimeraX : Structure visualization for researchers, educators, and developers

(2020) Eric F. Pettersen et al.   PROTEIN SCIENCE

Expansion and re-classification of the extracytoplasmic function (ECF) σ factor family

(2020) Delia Casas-Pastor et al.   NUCLEIC ACIDS RESEARCH

The antibiotic sorangicin A inhibits promoter DNA unwinding in aMycobacterium tuberculosisrifampicin-resistant RNA polymerase

(2020) Mirjana Lilic et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure and functional reselection of the Mango-III fluorogenic RNA aptamer

(2019) Robert J. Trachman et al.   Nature Chemical Biology

Structural basis of Q-dependent transcription antitermination

(2019) Jing Shi et al.   Nature Communications

Reconciling DNA replication and transcription in a hyphal organism: visualizing transcription complexes in live Streptomyces coelicolor

(2019) Leena Kerr et al.   MICROBIOLOGY-SGM

Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix

(2019) Dorothee Liebschner et al.   Acta Crystallographica Section D-Structural Biology

SWISS-MODEL: homology modelling of protein structures and complexes

(2018) Andrew Waterhouse et al.   NUCLEIC ACIDS RESEARCH

Fluorogenic RNA Mango aptamers for imaging small non-coding RNAs in mammalian cells

(2018) Alexis Autour et al.   Nature Communications

Bacterial zinc uptake regulator proteins and their regulons

(2018) Alevtina Mikhaylina et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

The Core and Holoenzyme forms of RNA Polymerase from Mycobacterium smegmatis

(2018) Tomáš Kouba et al.   JOURNAL OF BACTERIOLOGY

DNA mapping and kinetic modeling of the HrdB regulon in Streptomyces coelicolor

(2018) Klára Šmídová et al.   NUCLEIC ACIDS RESEARCH

cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination

(2017) Ali Punjani et al.   NATURE METHODS

Experimental charge density from electron microscopic maps

(2017) Jimin Wang   PROTEIN SCIENCE

MolProbity: More and better reference data for improved all-atom structure validation

(2017) Christopher J. Williams et al.   PROTEIN SCIENCE

Structural basis of bacterial transcription activation

(2017) Bin Liu et al.   SCIENCE

Zinc-dependent regulation of zinc import and export genes by Zur

(2017) Seung-Hwan Choi et al.   Nature Communications

Structural insights into the mycobacteria transcription initiation complex from analysis of X-ray crystal structures

(2017) Elizabeth A. Hubin et al.   Nature Communications

Structure and function of the mycobacterial transcription initiation complex with the essential regulator RbpA

(2017) Elizabeth A Hubin et al.   eLife

A pipeline approach to single-particle processing inRELION

(2017) Rafael Fernandez-Leiro et al.   Acta Crystallographica Section D-Structural Biology

Local and global regulation of transcription initiation in bacteria

(2016) Douglas F. Browning et al.   NATURE REVIEWS MICROBIOLOGY

Structural basis of transcription activation

(2016) Y. Feng et al.   SCIENCE

Crystal Structures of the E. coli Transcription Initiation Complexes with a Complete Bubble

(2015) Yuhong Zuo et al.   MOLECULAR CELL

Structural, functional, and genetic analyses of the actinobacterial transcription factor RbpA

(2015) Elizabeth A. Hubin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mechanistic insights into metal ion activation and operator recognition by the ferric uptake regulator

(2015) Zengqin Deng et al.   Nature Communications

Structure of a bacterial RNA polymerase holoenzyme open promoter complex

(2015) Brian Bae et al.   eLife

CarD uses a minor groove wedge mechanism to stabilize the RNA polymerase open promoter complex

(2015) Brian Bae et al.   eLife

Mycobacterial RNA polymerase forms unstable open promoter complexes that are stabilized by CarD

(2014) Elizabeth Davis et al.   NUCLEIC ACIDS RESEARCH

Structural and Mechanistic Basis of Zinc Regulation Across the E. coli Zur Regulon

(2014) Benjamin A. Gilston et al.   PLOS BIOLOGY

The actinobacterial transcription factor RbpA binds to the principal sigma subunit of RNA polymerase

(2013) Aline Tabib-Salazar et al.   NUCLEIC ACIDS RESEARCH

Structural Basis of Transcription Initiation

(2012) Y. Zhang et al.   SCIENCE

A Map of Minor Groove Shape and Electrostatic Potential from Hydroxyl Radical Cleavage Patterns of DNA

(2011) Eric P. Bishop et al.   ACS Chemical Biology

Fur Activates the Expression of Salmonella enterica Pathogenicity Island 1 by Directly Interacting with the hilD Operator In Vivo and In Vitro

(2011) Laura Teixidó et al.   PLoS One

Graded expression of zinc-responsive genes through two regulatory zinc-binding sites in Zur

(2011) J.-H. Shin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Molecular Evolution of Multisubunit RNA Polymerases: Sequence Analysis

(2009) William J. Lane et al.   JOURNAL OF MOLECULAR BIOLOGY

The role of DNA shape in protein–DNA recognition

(2009) Remo Rohs et al.   NATURE

The Zur of Xanthomonas campestris functions as a repressor and an activator of putative zinc homeostasis genes via recognizing two distinct sequences within its target promoters

(2008) Dong-Liang Huang et al.   NUCLEIC ACIDS RESEARCH