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Title
Structural basis of ribosomal RNA transcription regulation
Authors
Keywords
-
Journal
Nature Communications
Volume 12, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-01-22
DOI
10.1038/s41467-020-20776-y
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- Recent Advances in Understanding σ70-Dependent Transcription Initiation Mechanisms
- (2019) Abhishek Mazumder et al. JOURNAL OF MOLECULAR BIOLOGY
- Genome-wide effects on Escherichia coli transcription from ppGpp binding to its two sites on RNA polymerase
- (2019) Patricia Sanchez-Vazquez et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2019) Sarah K Stumper et al. eLife
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- (2018) Anoop Narayanan et al. JOURNAL OF BIOLOGICAL CHEMISTRY
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- (2018) Robert Glyde et al. MOLECULAR CELL
- Allosteric Effector ppGpp Potentiates the Inhibition of Transcript Initiation by DksA
- (2018) Vadim Molodtsov et al. MOLECULAR CELL
- Transcriptional Responses to ppGpp and DksA
- (2018) Richard L. Gourse et al. Annual Review of Microbiology
- Promoter Distortion and Opening in the RNA Polymerase II Cleft
- (2018) Christian Dienemann et al. MOLECULAR CELL
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- (2017) Kate L. Henderson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- RNA polymerase gate loop guides the nontemplate DNA strand in transcription complexes
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- Open complex scrunching before nucleotide addition accounts for the unusual transcription start site ofE. coliribosomal RNA promoters
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- New insights into the regulatory mechanisms of ppGpp and DksA on Escherichia coli RNA polymerase–promoter complex
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- Kinetics of promoter escape by bacterial RNA polymerase: effects of promoter contacts and transcription bubble collapse
- (2014) Je Ko et al. BIOCHEMICAL JOURNAL
- A Proximal Promoter Element Required for Positive Transcriptional Control by Guanosine Tetraphosphate and DksA Protein during the Stringent Response
- (2013) Bertil Gummesson et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- X-ray Crystal Structure ofEscherichia coliRNA Polymerase σ70Holoenzyme
- (2013) Katsuhiko S. Murakami JOURNAL OF BIOLOGICAL CHEMISTRY
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- (p)ppGpp: Still Magical?
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