UCSF ChimeraX : Structure visualization for researchers, educators, and developers

Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation

(2020) Daniel Wrapp et al.   SCIENCE

Structural Basis for Potent Neutralization of Betacoronaviruses by Single-Domain Camelid Antibodies

(2020) Daniel Wrapp et al.   CELL

Dense connectomic reconstruction in layer 4 of the somatosensory cortex

(2019) Alessandro Motta et al.   SCIENCE

Molecular Visualization on the Holodeck

(2018) Thomas D. Goddard et al.   JOURNAL OF MOLECULAR BIOLOGY

Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules

(2018) Brinda Vallat et al.   STRUCTURE

UniProt: a worldwide hub of protein knowledge

(2018)   NUCLEIC ACIDS RESEARCH

UCSF ChimeraX: Meeting modern challenges in visualization and analysis

(2017) Thomas D. Goddard et al.   PROTEIN SCIENCE

The chips are down for Moore’s law

(2016) M. Mitchell Waldrop   NATURE

PubChem BioAssay: 2017 update

(2016) Yanli Wang et al.   NUCLEIC ACIDS RESEARCH

EMDataBank unified data resource for 3DEM

(2015) Catherine L. Lawson et al.   NUCLEIC ACIDS RESEARCH

Database resources of the National Center for Biotechnology Information

(2015)   NUCLEIC ACIDS RESEARCH

Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

(2015) Andrej Sali et al.   STRUCTURE

Enhancing UCSF Chimera through web services

(2014) Conrad C. Huang et al.   NUCLEIC ACIDS RESEARCH

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Cytoscape App Store

(2013) S. Lotia et al.   BIOINFORMATICS

Validated near-atomic resolution structure of bacteriophage epsilon15 derived from cryo-EM and modeling

(2013) M. L. Baker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparison of Segger and other methods for segmentation and rigid-body docking of molecular components in Cryo-EM density maps

(2012) Grigore Pintilie et al.   BIOPOLYMERS

PubChem3D: a new resource for scientists

(2011) Evan E Bolton et al.   Journal of Cheminformatics

Visualization of macromolecular structures

(2010) Seán I O'Donoghue et al.   NATURE METHODS

Cryo-EM of macromolecular assemblies at near-atomic resolution

(2010) Matthew L Baker et al.   Nature Protocols

ModBase, a database of annotated comparative protein structure models, and associated resources

(2010) U. Pieper et al.   NUCLEIC ACIDS RESEARCH

BioCatalogue: a universal catalogue of web services for the life sciences

(2010) J. Bhagat et al.   NUCLEIC ACIDS RESEARCH

The RCSB Protein Data Bank: redesigned web site and web services

(2010) P. W. Rose et al.   NUCLEIC ACIDS RESEARCH

Web services at the European Bioinformatics Institute-2009

(2009) H. Mcwilliam et al.   NUCLEIC ACIDS RESEARCH

Flexible Fitting of Atomic Structures into Electron Microscopy Maps Using Molecular Dynamics

(2008) Leonardo G. Trabuco et al.   STRUCTURE