Structure of a bacterial RNA polymerase holoenzyme open promoter complex

Crystal Structures of the E. coli Transcription Initiation Complexes with a Complete Bubble

(2015) Yuhong Zuo et al.   MOLECULAR CELL

CarD uses a minor groove wedge mechanism to stabilize the RNA polymerase open promoter complex

(2015) Brian Bae et al.   eLife

Bacterial Sigma Factors: A Historical, Structural, and Genomic Perspective

(2014) Andrey Feklístov et al.   Annual Review of Microbiology

Kinetics of promoter escape by bacterial RNA polymerase: effects of promoter contacts and transcription bubble collapse

(2014) Je Ko et al.   BIOCHEMICAL JOURNAL

Structural Basis of Transcription Initiation by Bacterial RNA Polymerase Holoenzyme

(2014) Ritwika S. Basu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Global Regulation of Promoter Melting in Naive Lymphocytes

(2013) Fedor Kouzine et al.   CELL

X-ray Crystal Structure ofEscherichia coliRNA Polymerase σ70Holoenzyme

(2013) Katsuhiko S. Murakami   JOURNAL OF BIOLOGICAL CHEMISTRY

Structural insights into transcription initiation by RNA polymerase II

(2013) Sebastian Grünberg et al.   TRENDS IN BIOCHEMICAL SCIENCES

A grid-enabled web service for low-resolution crystal structure refinement

(2012) Daniel J. O'Donovan et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Structure and function of the initially transcribing RNA polymerase II–TFIIB complex

(2012) Sarah Sainsbury et al.   NATURE

Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans

(2012) Karen Adelman et al.   NATURE REVIEWS GENETICS

Duplex interrogation by a direct DNA repair protein in search of base damage

(2012) Chengqi Yi et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Structural Basis of Transcription Initiation

(2012) Y. Zhang et al.   SCIENCE

Linking Crystallographic Model and Data Quality

(2012) P. A. Karplus et al.   SCIENCE

Structural Basis for Promoter −10 Element Recognition by the Bacterial RNA Polymerase σ Subunit

(2011) Andrey Feklistov et al.   CELL

A new basal promoter element recognized by RNA polymerase core enzyme

(2011) Yulia Yuzenkova et al.   EMBO JOURNAL

Mechanism of Bacterial Transcription Initiation: RNA Polymerase - Promoter Binding, Isomerization to Initiation-Competent Open Complexes, and Initiation of RNA Synthesis

(2011) Ruth M. Saecker et al.   JOURNAL OF MOLECULAR BIOLOGY

Escherichia coli σ 70 senses sequence and conformation of the promoter spacer region

(2011) Shivani S. Singh et al.   NUCLEIC ACIDS RESEARCH

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Interaction ofEscherichia coliRNA Polymerase σ70Subunit with Promoter Elements in the Context of Free σ70, RNA Polymerase Holoenzyme, and the β′-σ70Complex

(2010) Vladimir Mekler et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Super-resolution biomolecular crystallography with low-resolution data

(2010) Gunnar F. Schröder et al.   NATURE

One-step DNA melting in the RNA polymerase cleft opens the initiation bubble to form an unstable open complex

(2010) T. J. Gries et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Damage Detection and Base Flipping in Direct DNA Alkylation Repair

(2009) Cai-Guang Yang et al.   CHEMBIOCHEM

Molecular Evolution of Multisubunit RNA Polymerases: Sequence Analysis

(2009) William J. Lane et al.   JOURNAL OF MOLECULAR BIOLOGY

RNA polymerase II–TFIIB structure and mechanism of transcription initiation

(2009) Dirk Kostrewa et al.   NATURE

Structure of an RNA Polymerase II-TFIIB Complex and the Transcription Initiation Mechanism

(2009) X. Liu et al.   SCIENCE

Direct Detection of Abortive RNA Transcripts in Vivo

(2009) S. R. Goldman et al.   SCIENCE

Evidence for a Tyrosine–Adenine Stacking Interaction and for a Short-lived Open Intermediate Subsequent to Initial Binding of Escherichia coli RNA Polymerase to Promoter DNA

(2008) Lisa A. Schroeder et al.   JOURNAL OF MOLECULAR BIOLOGY

Analysis of RNA polymerase-promoter complex formation

(2008) Wilma Ross et al.   METHODS