- Home
- Publications
- Publication Search
- Publication Details
Title
Codon usage bias
Authors
Keywords
-
Journal
MOLECULAR BIOLOGY REPORTS
Volume 49, Issue 1, Pages 539-565
Publisher
Springer Science and Business Media LLC
Online
2021-11-25
DOI
10.1007/s11033-021-06749-4
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Codon usage pattern and its influencing factors in different genomes of hepadnaviruses
- (2020) Bornali Deb et al. ARCHIVES OF VIROLOGY
- Hidden patterns of codon usage bias across kingdoms
- (2020) Yun Deng et al. Journal of the Royal Society Interface
- Comparative analysis of codon usage patterns in chloroplast genomes of six Euphorbiaceae species
- (2020) Zhanjun Wang et al. PeerJ
- Codon Optimization: A Mathematical Programming Approach
- (2020) Alper Şen et al. BIOINFORMATICS
- Non-AUG start codons: Expanding and regulating the small and alternative ORFeome
- (2020) Xiongwen Cao et al. EXPERIMENTAL CELL RESEARCH
- Correlation between gene expression levels under drought stress and synonymous codon usage in rice plant by in-silico study
- (2020) Fatemeh Chamani Mohasses et al. PLoS One
- A code within the genetic code: codon usage regulates co-translational protein folding
- (2020) Yi Liu Cell Communication and Signaling
- Metabolic Specialization and Codon Preference of Lignocellulolytic Genes in the White Rot Basidiomycete Ceriporiopsis subvermispora
- (2020) Alex Gonzalez et al. Genes
- Cell-Free Approach for Non-canonical Amino Acids Incorporation Into Polypeptides
- (2020) Zhenling Cui et al. Frontiers in Bioengineering and Biotechnology
- Polyploidization is accompanied by synonymous codon usage bias in the chloroplast genomes of both cotton and wheat
- (2020) Geng Tian et al. PLoS One
- Novel genetic code and record-setting AT-richness in the highly reduced plastid genome of the holoparasitic plant Balanophora
- (2019) Huei-Jiun Su et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Rapid Genetic Code Evolution in Green Algal Mitochondrial Genomes
- (2019) Emmanuel Noutahi et al. MOLECULAR BIOLOGY AND EVOLUTION
- Incorporation of non-standard amino acids into proteins: challenges, recent achievements, and emerging applications
- (2019) Xing Jin et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Understanding The Genetic Code
- (2019) Milton H. Saier JOURNAL OF BACTERIOLOGY
- Analysis of Synonymous Codon Usage Bias in Potato Virus M and Its Adaption to Hosts
- (2019) Zhen He et al. Viruses-Basel
- Evolution and Unprecedented Variants of the Mitochondrial Genetic Code in a Lineage of Green Algae
- (2019) David Žihala et al. Genome Biology and Evolution
- mRNA structure regulates protein expression through changes in functional half-life
- (2019) David M. Mauger et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- COUSIN (COdon Usage Similarity INdex): A Normalized Measure of Codon Usage Preferences
- (2019) Jérôme Bourret et al. Genome Biology and Evolution
- Codon usage of highly expressed genes affects proteome-wide translation efficiency
- (2018) Idan Frumkin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Purifying and positive selection in the evolution of stop codons
- (2018) Frida Belinky et al. Scientific Reports
- Prokaryotic coding regions have little if any specific depletion of Shine-Dalgarno motifs
- (2018) Alisa Yurovsky et al. PLoS One
- Synonymous codon usage pattern in model legume Medicago truncatula
- (2018) Hui SONG et al. Journal of Integrative Agriculture
- Selfing in Haploid Plants and Efficacy of Selection: Codon Usage Bias in the Model Moss Physcomitrella patens
- (2017) Péter Szövényi et al. Genome Biology and Evolution
- Codon optimality, bias and usage in translation and mRNA decay
- (2017) Gavin Hanson et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Protein-directed ribosomal frameshifting temporally regulates gene expression
- (2017) Sawsan Napthine et al. Nature Communications
- Comprehensive analysis of correlations among codon usage bias, gene expression, and substitution rate in Arachis duranensis and Arachis ipaënsis orthologs
- (2017) Hui Song et al. Scientific Reports
- Synthetic gene design-The rationale for codon optimization and implications for molecular pharming in plants
- (2016) Gina R. Webster et al. BIOTECHNOLOGY AND BIOENGINEERING
- An Unprecedented Non-canonical Nuclear Genetic Code with All Three Termination Codons Reassigned as Sense Codons
- (2016) Kristína Záhonová et al. CURRENT BIOLOGY
- The Yin and Yang of codon usage
- (2016) Anton A. Komar HUMAN MOLECULAR GENETICS
- Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use
- (2016) John F. Atkins et al. NUCLEIC ACIDS RESEARCH
- Codon Optimization to Enhance Expression Yields Insights into Chloroplast Translation
- (2016) Kwang-Chul Kwon et al. PLANT PHYSIOLOGY
- Codon Adaptation of Plastid Genes
- (2016) Haruo Suzuki et al. PLoS One
- Codon usage is an important determinant of gene expression levels largely through its effects on transcription
- (2016) Zhipeng Zhou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Transgenic rice expressing the cry2AX1 gene confers resistance to multiple lepidopteran pests
- (2016) M. Chakraborty et al. TRANSGENIC RESEARCH
- Analysis of codon usage patterns in Ginkgo biloba reveals codon usage tendency from A/U-ending to G/C-ending
- (2016) Bing He et al. Scientific Reports
- Transgenic rice plants expressing synthetic cry2AX1 gene exhibits resistance to rice leaffolder (Cnaphalocrosis medinalis)
- (2016) R. Manikandan et al. 3 Biotech
- Transgenic rice plants expressing synthetic cry2AX1 gene exhibits resistance to rice leaffolder (Cnaphalocrosis medinalis)
- (2016) R. Manikandan et al. 3 Biotech
- ‘Genetic Coding’ Reconsidered: An Analysis of Actual Usage
- (2015) Ulrich E. Stegmann BRITISH JOURNAL FOR THE PHILOSOPHY OF SCIENCE
- New insights into the interplay between codon bias determinants in plants
- (2015) S. Camiolo et al. DNA RESEARCH
- Synonymous Codon Usage Bias in the Plastid Genome is Unrelated to Gene Structure and Shows Evolutionary Heterogeneity
- (2015) Yueying Qi et al. Evolutionary Bioinformatics
- Cotranslational incorporation of non-standard amino acids using cell-free protein synthesis
- (2015) Robert B. Quast et al. FEBS LETTERS
- Analysis of synonymous codon usage in FAD7 genes from different plant species
- (2015) Q.P. Ma et al. GENETICS AND MOLECULAR RESEARCH
- Interaction of tRNA with Eukaryotic Ribosome
- (2015) Dmitri Graifer et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- The Code of Silence: Widespread Associations Between Synonymous Codon Biases and Gene Function
- (2015) Fran Supek JOURNAL OF MOLECULAR EVOLUTION
- Codon Bias as a Means to Fine-Tune Gene Expression
- (2015) Tessa E.F. Quax et al. MOLECULAR CELL
- Analysis of Genetic Code Ambiguity Arising from Nematode-Specific Misacylated tRNAs
- (2015) Kiyofumi Hamashima et al. PLoS One
- A semi-synthetic organism with an expanded genetic alphabet
- (2014) Denis A. Malyshev et al. NATURE
- Codon usage patterns in Chinese bayberry (Myrica rubra) based on RNA-Seq data
- (2013) Chao Feng et al. BMC GENOMICS
- Evaluation of Codon Biology in Citrus and Poncirus trifoliata Based on Genomic Features and Frame Corrected Expressed Sequence Tags
- (2013) T. Ahmad et al. DNA RESEARCH
- Analysis of Synonymous Codon Usage Patterns in Seven Different Citrus Species
- (2013) Chen Xu et al. Evolutionary Bioinformatics
- Efficient translation initiation dictates codon usage at gene start
- (2013) K. Bentele et al. Molecular Systems Biology
- Sounds of silence: synonymous nucleotides as a key to biological regulation and complexity
- (2013) S. A. Shabalina et al. NUCLEIC ACIDS RESEARCH
- Comparative analysis of codon usage patterns in chloroplast genomes of the Asteraceae family
- (2013) Xiaojun Nie et al. PLANT MOLECULAR BIOLOGY REPORTER
- Codon Deviation Coefficient: a novel measure for estimating codon usage bias and its statistical significance
- (2012) Zhang Zhang et al. BMC BIOINFORMATICS
- Mutational Bias and Translational Selection Shaping the Codon Usage Pattern of Tissue-Specific Genes in Rice
- (2012) Qingpo Liu PLoS One
- Synthetic Genetic Polymers Capable of Heredity and Evolution
- (2012) V. B. Pinheiro et al. SCIENCE
- Reduced Efficacy of Natural Selection on Codon Usage Bias in Selfing Arabidopsis and Capsella Species
- (2011) Suo Qiu et al. Genome Biology and Evolution
- A global picture of tRNA genes in plant genomes
- (2011) Morgane Michaud et al. PLANT JOURNAL
- Spatial Analyses of Mono, Di and Trinucleotide Trends in Plant Genes
- (2011) Andrea Porceddu et al. PLoS One
- Increased incidence of rare codon clusters at 5' and 3' gene termini:implications for function
- (2010) Thomas F Clarke et al. BMC GENOMICS
- Dual functions of codons in the genetic code
- (2010) Alexey V. Lobanov et al. CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY
- Relative Codon Adaptation: A Generic Codon Bias Index for Prediction of Gene Expression
- (2010) J. M. Fox et al. DNA RESEARCH
- Synonymous but not the same: the causes and consequences of codon bias
- (2010) Joshua B. Plotkin et al. NATURE REVIEWS GENETICS
- Non-protein amino acids: plant, soil and ecosystem interactions
- (2010) Valerie Vranova et al. PLANT AND SOIL
- Selenocysteine, Pyrrolysine, and the Unique Energy Metabolism of Methanogenic Archaea
- (2010) Michael Rother et al. ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL
- Molecular evolution of synonymous codon usage in Populus
- (2009) Pär K Ingvarsson BMC EVOLUTIONARY BIOLOGY
- Distinct genetic code expansion strategies for selenocysteine and pyrrolysine are reflected in different aminoacyl-tRNA formation systems
- (2009) Jing Yuan et al. FEBS LETTERS
- Origin and evolution of the genetic code: The universal enigma
- (2009) Eugene V. Koonin et al. IUBMB LIFE
- Preferred and avoided codon pairs in three domains of life
- (2008) Age Tats et al. BMC GENOMICS
- Relationship between mRNA secondary structure and sequence variability in Chloroplast genes: possible life history implications
- (2008) Neeraja M Krishnan et al. BMC GENOMICS
- Differential Selective Constraints Shaping Codon Usage Pattern of Housekeeping and Tissue-specific Homologous Genes of Rice and Arabidopsis
- (2008) P. Mukhopadhyay et al. DNA RESEARCH
- Factors influencing codon usage bias in genomes
- (2008) Hannah M. W. Salim et al. JOURNAL OF THE BRAZILIAN CHEMICAL SOCIETY
- Analysis of synonymous codon usage patterns in different plant mitochondrial genomes
- (2008) Meng Zhou et al. MOLECULAR BIOLOGY REPORTS
- Rare Codons Cluster
- (2008) Thomas F. Clarke et al. PLoS One
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started