Evaluation of Codon Biology in Citrus and Poncirus trifoliata Based on Genomic Features and Frame Corrected Expressed Sequence Tags

Patterns and Evolution of Nucleotide Landscapes in Seed Plants

(2012) Laurana Serres-Giardi et al.   PLANT CELL

Balanced Codon Usage Optimizes Eukaryotic Translational Efficiency

(2012) Wenfeng Qian et al.   PLoS Genetics

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

(2011) Marcus Lechner et al.   BMC BIOINFORMATICS

Evolution of Synonymous Codon Usage in Neurospora tetrasperma and Neurospora discreta

(2011) C. A. Whittle et al.   Genome Biology and Evolution

Synonymous Codon Usage, GC3, and Evolutionary Patterns Across Plastomes of Three Pooid Model Species: Emerging Grass Genome Models for Monocots

(2011) Gaurav Sablok et al.   MOLECULAR BIOTECHNOLOGY

Pack-Mutator-like transposable elements (Pack-MULEs) induce directional modification of genes through biased insertion and DNA acquisition

(2011) N. Jiang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

GC3 biology in corn, rice, sorghum and other grasses

(2010) Tatiana V Tatarinova et al.   BMC GENOMICS

Biased Gene Conversion Affects Patterns of Codon Usage and Amino Acid Usage in the Saccharomyces sensu stricto Group of Yeasts

(2010) R. J. Harrison et al.   MOLECULAR BIOLOGY AND EVOLUTION

Forces that influence the evolution of codon bias

(2010) P. M. Sharp et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

High-level accumulation of recombinant miraculin protein in transgenic tomatoes expressing a synthetic miraculin gene with optimized codon usage terminated by the native miraculin terminator

(2010) Kyoko Hiwasa-Tanase et al.   PLANT CELL REPORTS

A General Model of Codon Bias Due to GC Mutational Bias

(2010) Gareth A. Palidwor et al.   PLoS One

Mutation Bias Favors Protein Folding Stability in the Evolution of Small Populations

(2010) Raul Mendez et al.   PLoS Computational Biology

Fine-Tuning Translation Kinetics Selection as the Driving Force of Codon Usage Bias in the Hepatitis A Virus Capsid

(2010) Lluís Aragonès et al.   PLoS Pathogens

FrameDP: sensitive peptide detection on noisy matured sequences

(2009) J. Gouzy et al.   BIOINFORMATICS

Molecular evolution of synonymous codon usage in Populus

(2009) Pär K Ingvarsson   BMC EVOLUTIONARY BIOLOGY

Genome-wide analysis of major intrinsic proteins in the tree plant Populus trichocarpa: Characterization of XIP subfamily of aquaporins from evolutionary perspective

(2009) Anjali Gupta et al.   BMC PLANT BIOLOGY

Developmental programming of CpG island methylation profiles in the human genome

(2009) Ravid Straussman et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Coding-Sequence Determinants of Gene Expression in Escherichia coli

(2009) G. Kudla et al.   SCIENCE

General Rules for Optimal Codon Choice

(2009) Ruth Hershberg et al.   PLoS Genetics

Selection on Codon Bias

(2008) Ruth Hershberg et al.   Annual Review of Genetics

Patterns of Molecular Evolution in Caenorhabditis Preclude Ancient Origins of Selfing

(2008) A. D. Cutter et al.   GENETICS