Evolution and Unprecedented Variants of the Mitochondrial Genetic Code in a Lineage of Green Algae

Novel genetic code and record-setting AT-richness in the highly reduced plastid genome of the holoparasitic plant Balanophora

(2019) Huei-Jiun Su et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid Genetic Code Evolution in Green Algal Mitochondrial Genomes

(2019) Emmanuel Noutahi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Tracing the Evolution of the Plastome and Mitogenome in the Chloropicophyceae Uncovered Convergent tRNA Gene Losses and a Variant Plastid Genetic Code

(2019) Monique Turmel et al.   Genome Biology and Evolution

OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes

(2019) Stephan Greiner et al.   NUCLEIC ACIDS RESEARCH

Order, please! Uncertainty in the ordinal-level classification of Chlorophyceae

(2019) Karolina Fučíková et al.   PeerJ

Organellar phylogenomics inform systematics in the green algal family Hydrodictyaceae (Chlorophyceae) and provide clues to the complex evolutionary history of plastid genomes in the green algal tree of life

(2018) Hilary A. McManus et al.   AMERICAN JOURNAL OF BOTANY

Endogenous Stochastic Decoding of the CUG Codon by Competing Ser- and Leu-tRNAs in Ascoidea asiatica

(2018) Stefanie Mühlhausen et al.   CURRENT BIOLOGY

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolutionary instability of CUG-Leu in the genetic code of budding yeasts

(2018) Tadeusz Krassowski et al.   Nature Communications

Genetic Codes with No Dedicated Stop Codon: Context-Dependent Translation Termination

(2016) Estienne Carl Swart et al.   CELL

An Unprecedented Non-canonical Nuclear Genetic Code with All Three Termination Codons Reassigned as Sense Codons

(2016) Kristína Záhonová et al.   CURRENT BIOLOGY

Novel Ciliate Genetic Code Variants Including the Reassignment of All Three Stop Codons to Sense Codons inCondylostoma magnum

(2016) Stephen M. Heaphy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Chloroplast phylogenomic data from the green algal order Sphaeropleales (Chlorophyceae, Chlorophyta) reveal complex patterns of sequence evolution

(2016) Karolina Fučíková et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

(2015) Audrey A. Farwagi et al.   BMC GENOMICS

AliView: a fast and lightweight alignment viewer and editor for large datasets

(2014) Anders Larsson   BIOINFORMATICS

Gene Arrangement Convergence, Diverse Intron Content, and Genetic Code Modifications in Mitochondrial Genomes of Sphaeropleales (Chlorophyta)

(2014) Karolina Fučíková et al.   Genome Biology and Evolution

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Stop codon reassignments in the wild

(2014) N. N. Ivanova et al.   SCIENCE

Puttingincertae sedistaxa in their place: a proposal for ten new families and three new genera in Sphaeropleales (Chlorophyceae, Chlorophyta)

(2013) Karolina Fučíková et al.   JOURNAL OF PHYCOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Natural reassignment of CUU and CUA sense codons to alanine in Ashbya mitochondria

(2013) Jiqiang Ling et al.   NUCLEIC ACIDS RESEARCH

Crystal structures of 70S ribosomes bound to release factors RF1, RF2 and RF3

(2012) Jie Zhou et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Mitochondrial DNA of Clathrina clathrus (Calcarea, Calcinea): Six Linear Chromosomes, Fragmented rRNAs, tRNA Editing, and a Novel Genetic Code

(2012) Dennis V. Lavrov et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolution and Diversification of the Organellar Release Factor Family

(2012) Isabel Duarte et al.   MOLECULAR BIOLOGY AND EVOLUTION

LocARNA-P: Accurate boundary prediction and improved detection of structural RNAs

(2012) S. Will et al.   RNA

Transfer RNA modifications: nature's combinatorial chemistry playground

(2012) Jane E. Jackman et al.   Wiley Interdisciplinary Reviews-RNA

FACIL: Fast and Accurate Genetic Code Inference and Logo

(2011) Bas E. Dutilh et al.   BIOINFORMATICS

A Deviant Genetic Code in the Reduced Mitochondrial Genome of the Picoplanktonic Green Alga Pycnococcus provasolii

(2010) Monique Turmel et al.   JOURNAL OF MOLECULAR EVOLUTION

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Codon Usage in Mitochondrial Genomes: Distinguishing Context-Dependent Mutation from Translational Selection

(2007) W. Jia et al.   MOLECULAR BIOLOGY AND EVOLUTION