Codon Adaptation of Plastid Genes

Combined Analysis of the Chloroplast Genome and Transcriptome of the Antarctic Vascular Plant Deschampsia antarctica Desv

(2014) Jungeun Lee et al.   PLoS One

Reverse genetics in complex multigene operons by co-transformation of the plastid genome and its application to the open reading frame previously designatedpsbN

(2013) Katharina Krech et al.   PLANT JOURNAL

Measures of Compositional Strand Bias Related to Replication Machinery and its Applications

(2012) Kazuharu Arakawa et al.   CURRENT GENOMICS

The Plastid Genome-Encoded Ycf4 Protein Functions as a Nonessential Assembly Factor for Photosystem I in Higher Plants

(2012) K. Krech et al.   PLANT PHYSIOLOGY

Strand-biased Gene Distribution in Bacteria Is Related to both Horizontal Gene Transfer and Strand-biased Nucleotide Composition

(2012) Hao Wu et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Synonymous Codon Usage, GC3, and Evolutionary Patterns Across Plastomes of Three Pooid Model Species: Emerging Grass Genome Models for Monocots

(2011) Gaurav Sablok et al.   MOLECULAR BIOTECHNOLOGY

Mechanisms for maintenance, replication, and repair of the chloroplast genome in plants

(2010) B. L. Nielsen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Extreme Reconfiguration of Plastid Genomes in the Angiosperm Family Geraniaceae: Rearrangements, Repeats, and Codon Usage

(2010) M. M. Guisinger et al.   MOLECULAR BIOLOGY AND EVOLUTION

Synonymous but not the same: the causes and consequences of codon bias

(2010) Joshua B. Plotkin et al.   NATURE REVIEWS GENETICS

Forces that influence the evolution of codon bias

(2010) P. M. Sharp et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Systemic Imprint of Growth and Its Uses in Ecological (Meta)Genomics

(2010) Sara Vieira-Silva et al.   PLoS Genetics

Evidence That Mutation Is Universally Biased towards AT in Bacteria

(2010) Ruth Hershberg et al.   PLoS Genetics

Quantitative analysis of replication-related mutation and selection pressures in bacterial chromosomes and plasmids using generalised GC skew index

(2009) Kazuharu Arakawa et al.   BMC GENOMICS

The Organization of the Bacterial Genome

(2008) Eduardo P.C. Rocha   Annual Review of Genetics

Selection on Codon Bias

(2008) Ruth Hershberg et al.   Annual Review of Genetics

Comparison of Correspondence Analysis Methods for Synonymous Codon Usage in Bacteria

(2008) H. Suzuki et al.   DNA RESEARCH