New insights into the interplay between codon bias determinants in plants

Mutational bias is the driving force for shaping the synonymous codon usage pattern of alternatively spliced genes in rice (Oryza sativa L.)

(2014) Qingpo Liu et al.   MOLECULAR GENETICS AND GENOMICS

Evaluation of Codon Biology in Citrus and Poncirus trifoliata Based on Genomic Features and Frame Corrected Expressed Sequence Tags

(2013) T. Ahmad et al.   DNA RESEARCH

The Signatures of Selection for Translational Accuracy in Plant Genes

(2013) Andrea Porceddu et al.   Genome Biology and Evolution

gff2sequence, a new user friendly tool for the generation of genomic sequences

(2013) Salvatore Camiolo et al.   BioData Mining

The Relation of Codon Bias to Tissue-Specific Gene Expression in Arabidopsis thaliana

(2012) S. Camiolo et al.   GENETICS

Mutational Bias and Gene Conversion Affect the Intraspecific Nitrogen Stoichiometry of the Arabidopsis thaliana Transcriptome

(2012) Torsten Günther et al.   MOLECULAR BIOLOGY AND EVOLUTION

Patterns and Evolution of Nucleotide Landscapes in Seed Plants

(2012) Laurana Serres-Giardi et al.   PLANT CELL

Mutational Bias and Translational Selection Shaping the Codon Usage Pattern of Tissue-Specific Genes in Rice

(2012) Qingpo Liu   PLoS One

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

PLEXdb: gene expression resources for plants and plant pathogens

(2011) S. Dash et al.   NUCLEIC ACIDS RESEARCH

Spatial Analyses of Mono, Di and Trinucleotide Trends in Plant Genes

(2011) Andrea Porceddu et al.   PLoS One

An Evolutionarily Conserved Mechanism for Controlling the Efficiency of Protein Translation

(2010) Tamir Tuller et al.   CELL

Synonymous but not the same: the causes and consequences of codon bias

(2010) Joshua B. Plotkin et al.   NATURE REVIEWS GENETICS

A General Model of Codon Bias Due to GC Mutational Bias

(2010) Gareth A. Palidwor et al.   PLoS One

The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana

(2010) S. Ossowski et al.   SCIENCE

In plants, expression breadth and expression level distinctly and non-linearly correlate with gene structure

(2009) Hangxing Yang   Biology Direct

Universal function-specificity of codon usage

(2009) Hamed Shateri Najafabadi et al.   NUCLEIC ACIDS RESEARCH

Mutational Biases and Selective Forces Shaping the Structure of Arabidopsis Genes

(2009) Salvatore Camiolo et al.   PLoS One

General Rules for Optimal Codon Choice

(2009) Ruth Hershberg et al.   PLoS Genetics