Comprehensive analysis of correlations among codon usage bias, gene expression, and substitution rate in Arachis duranensis and Arachis ipaënsis orthologs

Comparative analysis of NBS-LRR genes and their response to Aspergillus flavus in Arachis

(2017) Hui Song et al.   PLoS One

Transcriptome sequencing reveals genome-wide variation in molecular evolutionary rate among ferns

(2016) Amanda L. Grusz et al.   BMC GENOMICS

Genome-wide comparative analysis of the codon usage patterns in plants

(2016) Ning Li et al.   Genes & Genomics

Nuclear Architecture and Patterns of Molecular Evolution Are Correlated in the CiliateChilodonella uncinata

(2016) Xyrus X. Maurer-Alcalá et al.   Genome Biology and Evolution

Expression Divergence Is Correlated with Sequence Evolution but Not Positive Selection in Conifers

(2016) Kathryn A. Hodgins et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut

(2016) David John Bertioli et al.   NATURE GENETICS

Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens

(2016) Xiaoping Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Developmental Transcriptome Map for Allotetraploid Arachis hypogaea

(2016) Josh Clevenger et al.   Frontiers in Plant Science

New insights into the interplay between codon bias determinants in plants

(2015) S. Camiolo et al.   DNA RESEARCH

Genome-Wide Analysis Reveals Diverged Patterns of Codon Bias, Gene Expression, and Rates of Sequence Evolution in Picea Gene Families

(2015) Amanda R. De La Torre et al.   Genome Biology and Evolution

Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing

(2015) Ya Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Determinants of the rate of protein sequence evolution

(2015) Jianzhi Zhang et al.   NATURE REVIEWS GENETICS

Identification of Fungus Resistant Wild Accessions and Interspecific Hybrids of the Genus Arachis

(2015) Marcos Doniseti Michelotto et al.   PLoS One

Pollen-Specific, but Not Sperm-Specific, Genes Show Stronger Purifying Selection and Higher Rates of Positive Selection Than Sporophytic Genes in Capsella grandiflora

(2013) Ramesh Arunkumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomic dosage effects on heterosis in triploid maize

(2013) H. Yao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants

(2013) R. De Smet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential requirements for mRNA folding partially explain why highly expressed proteins evolve slowly

(2013) C. Park et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rates of evolution in stress-related genes are associated with habitat preference in two Cardamine lineages

(2012) Lino Ometto et al.   BMC EVOLUTIONARY BIOLOGY

Slow but not low: genomic comparisons reveal slower evolutionary rate and higher dN/dS in conifers compared to angiosperms

(2012) Emmanuel Buschiazzo et al.   BMC EVOLUTIONARY BIOLOGY

Gene Expression Levels Are Correlated with Synonymous Codon Usage, Amino Acid Composition, and Gene Architecture in the Red Flour Beetle, Tribolium castaneum

(2012) Anna Williford et al.   MOLECULAR BIOLOGY AND EVOLUTION

Protein misinteraction avoidance causes highly expressed proteins to evolve slowly

(2012) J.-R. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Orthology prediction methods: A quality assessment using curated protein families

(2011) Kalliopi Trachana et al.   BIOESSAYS

Genomic Determinants of Protein Evolution and Polymorphism in Arabidopsis

(2011) Tanja Slotte et al.   Genome Biology and Evolution

Factors that Contribute to Variation in Evolutionary Rate among Arabidopsis Genes

(2011) L. Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

An overview of peanut and its wild relatives

(2011) David J. Bertioli et al.   Plant Genetic Resources-Characterization and Utilization

Expression Level, Evolutionary Rate, and the Cost of Expression

(2010) J. L. Cherry   Genome Biology and Evolution

Patterns of Codon Usage Bias in Silene latifolia

(2010) S. Qiu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome Wide Analyses Reveal Little Evidence for Adaptive Evolution in Many Plant Species

(2010) T. I. Gossmann et al.   MOLECULAR BIOLOGY AND EVOLUTION

Misfolded proteins impose a dosage-dependent fitness cost and trigger a cytosolic unfolded protein response in yeast

(2010) K. A. Geiler-Samerotte et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Adaptive evolution of young gene duplicates in mammals

(2009) M. V. Han et al.   GENOME RESEARCH

The quest for orthologs: finding the corresponding gene across genomes

(2008) Arnold Kuzniar et al.   TRENDS IN GENETICS