A-to-I RNA Editing in Cancer: From Evaluating the Editing Level to Exploring the Editing Effects
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
A-to-I RNA Editing in Cancer: From Evaluating the Editing Level to Exploring the Editing Effects
Authors
Keywords
-
Journal
Frontiers in Oncology
Volume 10, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2021-02-13
DOI
10.3389/fonc.2020.632187
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Selective Enrichment of A-to-I Edited Transcripts from Cellular RNA Using Endonuclease V
- (2020) Steve D. Knutson et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Investigating RNA editing in deep transcriptome datasets with REDItools and REDIportal
- (2020) Claudio Lo Giudice et al. Nature Protocols
- Cis- and trans-regulations of pre-mRNA splicing by RNA editing enzymes influence cancer development
- (2020) Sze Jing Tang et al. Nature Communications
- Novel Engineered Programmable Systems for ADAR-Mediated RNA Editing
- (2020) Guillermo Aquino-Jarquin Molecular Therapy-Nucleic Acids
- Chemical Profiling of A‐to‐I RNA Editing Using a Click‐Compatible Phenylacrylamide
- (2020) Steve D Knutson et al. CHEMISTRY-A EUROPEAN JOURNAL
- The A-to-I RNA Editing Enzyme Adar1 Is Essential for Normal Embryonic Cardiac Growth and Development
- (2020) Joseph B Moore et al. CIRCULATION RESEARCH
- ADAR1 Regulates Early T Cell Development via MDA5-Dependent and -Independent Pathways
- (2020) Tuangtong Vongpipatana et al. JOURNAL OF IMMUNOLOGY
- Long non-coding RNAs regulate drug resistance in cancer
- (2020) Kaisheng Liu et al. Molecular Cancer
- The cell line A-to-I RNA editing catalogue
- (2020) Amos A Schaffer et al. NUCLEIC ACIDS RESEARCH
- ADAR1-mediated RNA editing is a novel oncogenic process in thyroid cancer and regulates miR-200 activity
- (2020) Julia Ramírez-Moya et al. ONCOGENE
- RNA editing mediates the functional switch of COPA in a novel mechanism of hepatocarcinogenesis
- (2020) Yangyang Song et al. JOURNAL OF HEPATOLOGY
- De Novo A-to-I RNA Editing Discovery in lncRNA
- (2020) Domenico Alessandro Silvestris et al. Cancers
- A-to-I RNA editing as a tuner of noncoding RNAs in cancer
- (2020) Yuanfan Liao et al. CANCER LETTERS
- EPAI-NC: Enhanced prediction of adenosine to inosine RNA editing sites using nucleotide compositions
- (2019) Ahsan Ahmad et al. ANALYTICAL BIOCHEMISTRY
- Mapping the dsRNA World
- (2019) Daniel P. Reich et al. Cold Spring Harbor Perspectives in Biology
- ADAR1: A New Target for Immuno-oncology Therapy
- (2019) Amruta Bhate et al. MOLECULAR CELL
- The Landscape of Circular RNA in Cancer
- (2019) Josh N. Vo et al. CELL
- Circular RNAs in Cancer: emerging functions in hallmarks, stemness, resistance and roles as potential biomarkers
- (2019) Min Su et al. Molecular Cancer
- Identification of Adenosine-to-Inosine RNA Editing with Acrylonitrile Reagents
- (2019) Ying Li et al. ORGANIC LETTERS
- The Role of Non-coding RNAs in Oncology
- (2019) Frank J. Slack et al. CELL
- Genome-wide quantification of ADAR adenosine-to-inosine RNA editing activity
- (2019) Shalom Hillel Roth et al. NATURE METHODS
- Ranking of non-coding pathogenic variants and putative essential regions of the human genome
- (2019) Alex Wells et al. Nature Communications
- A-to-I RNA Editing: An Overlooked Source of Cancer Mutations
- (2018) Shay Ben-Aroya et al. CANCER CELL
- A-to-I RNA Editing Contributes to Proteomic Diversity in Cancer
- (2018) Xinxin Peng et al. CANCER CELL
- The role of A-to-I RNA editing in cancer development
- (2018) Xiaoyan Xu et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- RNA editing in nascent RNA affects pre-mRNA splicing
- (2018) Yun-Hua Esther Hsiao et al. GENOME RESEARCH
- Highly parallel direct RNA sequencing on an array of nanopores
- (2018) Daniel R Garalde et al. NATURE METHODS
- A-to-I RNA editing — immune protector and transcriptome diversifier
- (2018) Eli Eisenberg et al. NATURE REVIEWS GENETICS
- Base modifications affecting RNA polymerase and reverse transcriptase fidelity
- (2018) Vladimir Potapov et al. NUCLEIC ACIDS RESEARCH
- ADARs and editing: The role of A-to-I RNA modification in cancer progression
- (2018) Kajsa Fritzell et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- Accurate identification of RNA editing sites from primitive sequence with deep neural networks
- (2018) Zhangyi Ouyang et al. Scientific Reports
- Increased RNA Editing May Provide a Source for Autoantigens in Systemic Lupus Erythematosus
- (2018) Shalom Hillel Roth et al. Cell Reports
- Chemical Labeling and Affinity Capture of Inosine-Containing RNAs Using Acrylamidofluorescein
- (2018) Steve D. Knutson et al. BIOCONJUGATE CHEMISTRY
- Single-nucleotide variants in human RNA: RNA editing and beyond
- (2018) Yan Guo et al. Briefings in Functional Genomics
- Computational approaches for detection and quantification of A-to-I RNA-editing
- (2018) Yishay Pinto et al. METHODS
- Loss of ADAR1 in tumours overcomes resistance to immune checkpoint blockade
- (2018) Jeffrey J. Ishizuka et al. NATURE
- Tumor-derived IFN triggers chronic pathway agonism and sensitivity to ADAR loss
- (2018) Huayang Liu et al. NATURE MEDICINE
- ADAR2-dependent A-to-I RNA editing in the extracellular linear and circular RNAs
- (2018) Takashi Hosaka et al. NEUROSCIENCE RESEARCH
- COSMIC: the Catalogue Of Somatic Mutations In Cancer
- (2018) John G Tate et al. NUCLEIC ACIDS RESEARCH
- Identification of ADAR1 adenosine deaminase dependency in a subset of cancer cells
- (2018) Hugh S. Gannon et al. Nature Communications
- The Role of RNA Editing in Cancer Development and Metabolic Disorders
- (2018) Che-Pei Kung et al. Frontiers in Endocrinology
- Activation of AZIN1 RNA editing is a novel mechanism that promotes invasive potential of cancer-associated fibroblasts in colorectal cancer
- (2018) Sho Takeda et al. CANCER LETTERS
- Systematic characterization of A-to-I RNA editing hotspots in microRNAs across human cancers
- (2017) Yumeng Wang et al. GENOME RESEARCH
- Adenosine Deaminase That Acts on RNA 3 (ADAR3) Binding to Glutamate Receptor Subunit B Pre-mRNA Inhibits RNA Editing in Glioblastoma
- (2017) Eimile Oakes et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Dynamic landscape and regulation of RNA editing in mammals
- (2017) Meng How Tan et al. NATURE
- The m1A landscape on cytosolic and mitochondrial mRNA at single-base resolution
- (2017) Modi Safra et al. NATURE
- ADAR2 regulates RNA stability by modifying access of decay-promoting RNA-binding proteins
- (2017) Aparna Anantharaman et al. NUCLEIC ACIDS RESEARCH
- Single-cell transcriptomics reveals specific RNA editing signatures in the human brain
- (2017) Ernesto Picardi et al. RNA
- RNA editing with CRISPR-Cas13
- (2017) David B. T. Cox et al. SCIENCE
- The RNA-editing enzyme ADAR promotes lung adenocarcinoma migration and invasion by stabilizingFAK
- (2017) Elianna M. Amin et al. Science Signaling
- Circular RNA expression is suppressed by androgen receptor (AR)-regulated adenosine deaminase that acts on RNA (ADAR1) in human hepatocellular carcinoma
- (2017) Liang Shi et al. Cell Death & Disease
- The RNA-editing enzyme ADAR promotes lung adenocarcinoma migration and invasion by stabilizingFAK
- (2017) Elianna M. Amin et al. Science Signaling
- RED-ML: a novel, effective RNA editing detection method based on machine learning
- (2017) Heng Xiong et al. GigaScience
- STRUM: structure-based prediction of protein stability changes upon single-point mutation
- (2016) Lijun Quan et al. BIOINFORMATICS
- RDDpred: a condition-specific RNA-editing prediction model from RNA-seq data
- (2016) Min-su Kim et al. BMC GENOMICS
- RNAEditor: easy detection of RNA editing events and the introduction of editing islands
- (2016) David John et al. BRIEFINGS IN BIOINFORMATICS
- ADAR1 Activation Drives Leukemia Stem Cell Self-Renewal by Impairing Let-7 Biogenesis
- (2016) Maria Anna Zipeto et al. Cell Stem Cell
- Editing of Cellular Self-RNAs by Adenosine Deaminase ADAR1 Suppresses Innate Immune Stress Responses
- (2016) Cyril X. George et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Identification of human RNA editing sites: A historical perspective
- (2016) Gokul Ramaswami et al. METHODS
- Adenosine-to-inosine RNA editing controls cathepsin S expression in atherosclerosis by enabling HuR-mediated post-transcriptional regulation
- (2016) Konstantinos Stellos et al. NATURE MEDICINE
- REDIportal: a comprehensive database of A-to-I RNA editing events in humans
- (2016) Ernesto Picardi et al. NUCLEIC ACIDS RESEARCH
- LNCediting: a database for functional effects of RNA editing in lncRNAs
- (2016) Jing Gong et al. NUCLEIC ACIDS RESEARCH
- RED: A Java-MySQL Software for Identifying and Visualizing RNA Editing Sites Using Rule-Based and Statistical Filters
- (2016) Yongmei Sun et al. PLoS One
- Next-generation sequencing technologies for detection of modified nucleotides in RNAs
- (2016) Schraga Schwartz et al. RNA Biology
- The mRNA-edited form of GABRA3 suppresses GABRA3-mediated Akt activation and breast cancer metastasis
- (2016) Kiranmai Gumireddy et al. Nature Communications
- iRNA-AI: identifying the adenosine to inosine editing sites in RNA sequences
- (2016) Wei Chen et al. Oncotarget
- RES-Scanner: a software package for genome-wide identification of RNA-editing sites
- (2016) Zongji Wang et al. GigaScience
- PAI: Predicting adenosine to inosine editing sites by using pseudo nucleotide compositions
- (2016) Wei Chen et al. Scientific Reports
- RASER: reads aligner for SNPs and editing sites of RNA
- (2015) Jaegyoon Ahn et al. BIOINFORMATICS
- DREAM: a webserver for the identification of editing sites in mature miRNAs using deep sequencing data
- (2015) Shahar Alon et al. BIOINFORMATICS
- RCARE: RNA Sequence Comparison and Annotation for RNA Editing
- (2015) Soo Youn Lee et al. BMC Medical Genomics
- The Genomic Landscape and Clinical Relevance of A-to-I RNA Editing in Human Cancers
- (2015) Leng Han et al. CANCER CELL
- Isoforms of RNA-Editing Enzyme ADAR1 Independently Control Nucleic Acid Sensor MDA5-Driven Autoimmunity and Multi-organ Development
- (2015) Kathleen Pestal et al. IMMUNITY
- An RNA editing fingerprint of cancer stem cell reprogramming
- (2015) Leslie A Crews et al. Journal of Translational Medicine
- Selectively Constrained RNA Editing Regulation Crosstalks with piRNA Biogenesis in Primates
- (2015) Xin-Zhuang Yang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed
- (2015) Agnieszka Rybak-Wolf et al. MOLECULAR CELL
- Reduced adenosine-to-inosine miR-455-5p editing promotes melanoma growth and metastasis
- (2015) Einav Shoshan et al. NATURE CELL BIOLOGY
- Genome sequence–independent identification of RNA editing sites
- (2015) Qing Zhang et al. NATURE METHODS
- HISAT: a fast spliced aligner with low memory requirements
- (2015) Daehwan Kim et al. NATURE METHODS
- The re-emergence of natural products for drug discovery in the genomics era
- (2015) Alan L. Harvey et al. NATURE REVIEWS DRUG DISCOVERY
- A-to-I editing of coding and non-coding RNAs by ADARs
- (2015) Kazuko Nishikura NATURE REVIEWS MOLECULAR CELL BIOLOGY
- The reverse transcription signature ofN-1-methyladenosine in RNA-Seq is sequence dependent
- (2015) Ralf Hauenschild et al. NUCLEIC ACIDS RESEARCH
- PRUNE2 is a human prostate cancer suppressor regulated by the intronic long noncoding RNAPCA3
- (2015) Ahmad Salameh et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Reduced levels of protein recoding by A-to-I RNA editing in Alzheimer's disease
- (2015) Khen Khermesh et al. RNA
- RNA editing by ADAR1 prevents MDA5 sensing of endogenous dsRNA as nonself
- (2015) B. J. Liddicoat et al. SCIENCE
- Profiling RNA editing in human tissues: towards the inosinome Atlas
- (2015) Ernesto Picardi et al. Scientific Reports
- Elevated RNA Editing Activity Is a Major Contributor to Transcriptomic Diversity in Tumors
- (2015) Nurit Paz-Yaacov et al. Cell Reports
- Analysis of Intron Sequences Reveals Hallmarks of Circular RNA Biogenesis in Animals
- (2015) Andranik Ivanov et al. Cell Reports
- The Noncoding RNA Revolution—Trashing Old Rules to Forge New Ones
- (2014) Thomas R. Cech et al. CELL
- A genome-wide map of hyper-edited RNA reveals numerous new sites
- (2014) Hagit T. Porath et al. Nature Communications
- The RNA-Editing Enzyme ADAR1 Controls Innate Immune Responses to RNA
- (2014) Niamh M. Mannion et al. Cell Reports
- REDItools: high-throughput RNA editing detection made easy
- (2013) Ernesto Picardi et al. BIOINFORMATICS
- VIRGO: visualization of A-to-I RNA editing sites in genomic sequences
- (2013) Rosario Distefano et al. BMC BIOINFORMATICS
- Prediction of constitutive A-to-I editing sites from human transcriptomes in the absence of genomic sequences
- (2013) Shanshan Zhu et al. BMC GENOMICS
- A disrupted RNA editing balance mediated by ADARs (Adenosine DeAminases that act on RNA) in human hepatocellular carcinoma
- (2013) Tim Hon Man Chan et al. GUT
- Recoding RNA editing of AZIN1 predisposes to hepatocellular carcinoma
- (2013) Leilei Chen et al. NATURE MEDICINE
- Quantifying RNA allelic ratios by microfluidic multiplex PCR and sequencing
- (2013) Rui Zhang et al. NATURE METHODS
- Identifying RNA editing sites using RNA sequencing data alone
- (2013) Gokul Ramaswami et al. NATURE METHODS
- RADAR: a rigorously annotated database of A-to-I RNA editing
- (2013) Gokul Ramaswami et al. NUCLEIC ACIDS RESEARCH
- ADAR1 is essential for intestinal homeostasis and stem cell maintenance
- (2013) W Qiu et al. Cell Death & Disease
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
- (2012) Pablo Cingolani et al. FLY
- VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
- (2012) D. C. Koboldt et al. GENOME RESEARCH
- Attenuated adenosine-to-inosine editing of microRNA-376a* promotes invasiveness of glioblastoma cells
- (2012) Yukti Choudhury et al. JOURNAL OF CLINICAL INVESTIGATION
- Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome
- (2012) Zhiyu Peng et al. NATURE BIOTECHNOLOGY
- Accurate identification of human Alu and non-Alu RNA editing sites
- (2012) Gokul Ramaswami et al. NATURE METHODS
- ViennaRNA Package 2.0
- (2011) Ronny Lorenz et al. Algorithms for Molecular Biology
- Accurate identification of A-to-I RNA editing in human by transcriptome sequencing
- (2011) J. H. Bahn et al. GENOME RESEARCH
- Counting absolute numbers of molecules using unique molecular identifiers
- (2011) Teemu Kivioja et al. NATURE METHODS
- Predicting sites of ADAR editing in double-stranded RNA
- (2011) Julie M. Eggington et al. Nature Communications
- DARNED: a DAtabase of RNa EDiting in humans
- (2010) A. Kiran et al. BIOINFORMATICS
- Fast and SNP-tolerant detection of complex variants and splicing in short reads
- (2010) T. D. Wu et al. BIOINFORMATICS
- Influence of an Adenosine Deaminase Inhibitor, Erythro-9-(2-hydroxy-3-nonyl) Adenine Hydrochloride, on 5-HT2CR mRNA Editing in Primary Cultured Cortical Cells
- (2010) Pham Nguyet Thi Hang et al. BIOLOGICAL & PHARMACEUTICAL BULLETIN
- Inosine cyanoethylation identifies A-to-I RNA editing sites in the human transcriptome
- (2010) Masayuki Sakurai et al. Nature Chemical Biology
- ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
- (2010) K. Wang et al. NUCLEIC ACIDS RESEARCH
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- ADAR1 is essential for the maintenance of hematopoiesis and suppression of interferon signaling
- (2008) Jochen C Hartner et al. NATURE IMMUNOLOGY
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started