RNA editing in nascent RNA affects pre-mRNA splicing

A matter of maturity: The impact of pre-mRNA processing in gene expression and antigen presentation

(2017) Rodrigo Prado Martins et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Alternative splicing modulated by genetic variants demonstrates accelerated evolution regulated by highly conserved proteins

(2016) Yun-Hua Esther Hsiao et al.   GENOME RESEARCH

REDIportal: a comprehensive database of A-to-I RNA editing events in humans

(2016) Ernesto Picardi et al.   NUCLEIC ACIDS RESEARCH

Adenosine to Inosine editing frequency controlled by splicing efficiency

(2016) Konstantin Licht et al.   NUCLEIC ACIDS RESEARCH

RASER: reads aligner for SNPs and editing sites of RNA

(2015) Jaegyoon Ahn et al.   BIOINFORMATICS

Antagonistic regulation of mRNA expression and splicing by CELF and MBNL proteins

(2015) Eric T. Wang et al.   GENOME RESEARCH

Genome sequence–independent identification of RNA editing sites

(2015) Qing Zhang et al.   NATURE METHODS

A-to-I editing of coding and non-coding RNAs by ADARs

(2015) Kazuko Nishikura   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Ensembl 2016

(2015) Andrew Yates et al.   NUCLEIC ACIDS RESEARCH

Genome-wide identification and characterization of tissue-specific RNA editing events inD. melanogasterand their potential role in regulating alternative splicing

(2015) Alborz Mazloomian et al.   RNA Biology

Genomic analysis of ADAR1 binding and its involvement in multiple RNA processing pathways

(2015) Jae Hoon Bahn et al.   Nature Communications

High-Resolution Sequencing and Modeling Identifies Distinct Dynamic RNA Regulatory Strategies

(2014) Michal Rabani et al.   CELL

Principles and Properties of Eukaryotic mRNPs

(2014) Sarah F. Mitchell et al.   MOLECULAR CELL

Context-dependent control of alternative splicing by RNA-binding proteins

(2014) Xiang-Dong Fu et al.   NATURE REVIEWS GENETICS

Coupling mRNA processing with transcription in time and space

(2014) David L. Bentley   NATURE REVIEWS GENETICS

A genome-wide map of hyper-edited RNA reveals numerous new sites

(2014) Hagit T. Porath et al.   Nature Communications

RNA-DNA Differences Are Generated in Human Cells within Seconds after RNA Exits Polymerase II

(2014) Isabel X. Wang et al.   Cell Reports

Mammalian conserved ADAR targets comprise only a small fragment of the human editosome

(2014) Yishay Pinto et al.   GENOME BIOLOGY

A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes

(2013) L. Bazak et al.   GENOME RESEARCH

Genome-wide analysis of A-to-I RNA editing by single-molecule sequencing in Drosophila

(2013) Georges St Laurent et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

1000 Genomes Selection Browser 1.0: a genome browser dedicated to signatures of natural selection in modern humans

(2013) Marc Pybus et al.   NUCLEIC ACIDS RESEARCH

RADAR: a rigorously annotated database of A-to-I RNA editing

(2013) Gokul Ramaswami et al.   NUCLEIC ACIDS RESEARCH

Global regulation of alternative splicing by adenosine deaminase acting on RNA (ADAR)

(2013) O. Solomon et al.   RNA

Analysis and design of RNA sequencing experiments for identifying RNA editing and other single-nucleotide variants

(2013) J.-H. Lee et al.   RNA

Tertiary structural elements determine the extent and specificity of messenger RNA editing

(2013) Leila E. Rieder et al.   Nature Communications

Transcript Dynamics of Proinflammatory Genes Revealed by Sequence Analysis of Subcellular RNA Fractions

(2012) Dev M. Bhatt et al.   CELL

Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs

(2012) H. Tilgner et al.   GENOME RESEARCH

GENCODE: The reference human genome annotation for The ENCODE Project

(2012) J. Harrow et al.   GENOME RESEARCH

Nascent-Seq Indicates Widespread Cotranscriptional RNA Editing in Drosophila

(2012) Joseph Rodriguez et al.   MOLECULAR CELL

Landscape of transcription in human cells

(2012) Sarah Djebali et al.   NATURE

RNA-interacting proteins act as site-specific repressors of ADAR2-mediated RNA editing and fluctuate upon neuronal stimulation

(2012) Aamira Tariq et al.   NUCLEIC ACIDS RESEARCH

Steric antisense inhibition of AMPA receptor Q/R editing reveals tight coupling to intronic editing sites and splicing

(2012) Andrew C. Penn et al.   NUCLEIC ACIDS RESEARCH

Identification of allele-specific alternative mRNA processing via transcriptome sequencing

(2012) Gang Li et al.   NUCLEIC ACIDS RESEARCH

Analysis of Transcriptome Complexity Through RNA Sequencing in Normal and Failing Murine Hearts

(2011) Jae-Hyung Lee et al.   CIRCULATION RESEARCH

Accurate identification of A-to-I RNA editing in human by transcriptome sequencing

(2011) J. H. Bahn et al.   GENOME RESEARCH

The intricate relationship between RNA structure, editing, and splicing

(2011) Leila E. Rieder et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Functions and Regulation of RNA Editing by ADAR Deaminases

(2010) Kazuko Nishikura   Annual Review of Biochemistry

Analysis and design of RNA sequencing experiments for identifying isoform regulation

(2010) Yarden Katz et al.   NATURE METHODS

A novel tissue-specific alternatively spliced form of the A-to-I RNA editing enzyme ADAR2

(2010) Lily Agranat et al.   RNA Biology

Splice site strength–dependent activity and genetic buffering by poly-G runs

(2009) Xinshu Xiao et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Beyond DNA: RNA Editing and Steps Toward Alu Exonization in Primates

(2008) Maren Möller-Krull et al.   JOURNAL OF MOLECULAR BIOLOGY