- Home
- Publications
- Publication Search
- Publication Details
Title
HISAT: a fast spliced aligner with low memory requirements
Authors
Keywords
-
Journal
NATURE METHODS
Volume 12, Issue 4, Pages 357-360
Publisher
Springer Nature
Online
2015-03-10
DOI
10.1038/nmeth.3317
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Systematic evaluation of spliced alignment programs for RNA-seq data
- (2013) Pär G Engström et al. NATURE METHODS
- OLego: fast and sensitive mapping of spliced mRNA-Seq reads using small seeds
- (2013) Jie Wu et al. NUCLEIC ACIDS RESEARCH
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Personal Omics Profiling Reveals Dynamic Molecular and Medical Phenotypes
- (2012) Rui Chen et al. CELL
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- Modelling and simulating generic RNA-Seq experiments with the flux simulator
- (2012) Thasso Griebel et al. NUCLEIC ACIDS RESEARCH
- In-depth annotation of SNPs arising from resequencing projects using NGS-SNP
- (2011) J. R. Grant et al. BIOINFORMATICS
- Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
- (2011) M. N. Cabili et al. GENES & DEVELOPMENT
- Computational methods for transcriptome annotation and quantification using RNA-seq
- (2011) Manuel Garber et al. NATURE METHODS
- TopHat-Fusion: an algorithm for discovery of novel fusion transcripts
- (2011) Daehwan Kim et al. GENOME BIOLOGY
- Fast and SNP-tolerant detection of complex variants and splicing in short reads
- (2010) T. D. Wu et al. BIOINFORMATICS
- Post-transcriptional processing generates a diversity of 5′-modified long and short RNAs
- (2009) NATURE
- Mapping and quantifying mammalian transcriptomes by RNA-Seq
- (2008) Ali Mortazavi et al. NATURE METHODS
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now