RDDpred: a condition-specific RNA-editing prediction model from RNA-seq data
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
RDDpred: a condition-specific RNA-editing prediction model from RNA-seq data
Authors
Keywords
RNA-editing, Condition-specific, Machine-learning, Random forest, RNA-seq, Systematic artefact
Journal
BMC GENOMICS
Volume 17, Issue S1, Pages -
Publisher
Springer Nature
Online
2016-01-11
DOI
10.1186/s12864-015-2301-y
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Genome sequence–independent identification of RNA editing sites
- (2015) Qing Zhang et al. NATURE METHODS
- SM a SH: a benchmarking toolkit for human genome variant calling
- (2014) Ameet Talwalkar et al. BIOINFORMATICS
- Systematic Identification and Characterization of RNA Editing in Prostate Tumors
- (2014) Fan Mo et al. PLoS One
- Systematic evaluation of spliced alignment programs for RNA-seq data
- (2013) Pär G Engström et al. NATURE METHODS
- Genome-wide analysis of A-to-I RNA editing by single-molecule sequencing in Drosophila
- (2013) Georges St Laurent et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- RefSeq: an update on mammalian reference sequences
- (2013) Kim D. Pruitt et al. NUCLEIC ACIDS RESEARCH
- RADAR: a rigorously annotated database of A-to-I RNA editing
- (2013) Gokul Ramaswami et al. NUCLEIC ACIDS RESEARCH
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome
- (2012) Zhiyu Peng et al. NATURE BIOTECHNOLOGY
- The difficult calls in RNA editing
- (2012) Brenda Bass et al. NATURE BIOTECHNOLOGY
- ADAR2-editing activity inhibits glioblastoma growth through the modulation of the CDC14B/Skp2/p21/p27 axis
- (2012) F Galeano et al. ONCOGENE
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- Accurate identification of A-to-I RNA editing in human by transcriptome sequencing
- (2011) J. H. Bahn et al. GENOME RESEARCH
- Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA-editing targets in transcript 3′ UTRs
- (2011) Brad R Rosenberg et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Functions and Regulation of RNA Editing by ADAR Deaminases
- (2010) Kazuko Nishikura Annual Review of Biochemistry
- DARNED: a DAtabase of RNa EDiting in humans
- (2010) A. Kiran et al. BIOINFORMATICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Retraction Note to: Cellular APOBEC3G restricts HIV-1 infection in resting CD4+ T cells
- (2010) Ya-Lin Chiu et al. NATURE
- The Sequence Read Archive
- (2010) R. Leinonen et al. NUCLEIC ACIDS RESEARCH
- Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data
- (2009) Jacob F. Degner et al. BIOINFORMATICS
- Genome-wide analysis of allelic expression imbalance in human primary cells by high-throughput transcriptome resequencing
- (2009) Graham A. Heap et al. HUMAN MOLECULAR GENETICS
- Genome-Wide Identification of Human RNA Editing Sites by Parallel DNA Capturing and Sequencing
- (2009) J. B. Li et al. SCIENCE
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now