Inter-domain dynamics in the chaperone SurA and multi-site binding to its outer membrane protein clients
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Title
Inter-domain dynamics in the chaperone SurA and multi-site binding to its outer membrane protein clients
Authors
Keywords
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Journal
Nature Communications
Volume 11, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-05-01
DOI
10.1038/s41467-020-15702-1
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Note: Only part of the references are listed.- Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry
- (2019) Andy M C Lau et al. BIOINFORMATICS
- Functional Modules of the Proteostasis Network
- (2019) Gopal G. Jayaraj et al. Cold Spring Harbor Perspectives in Biology
- The proteostasis network and its decline in ageing
- (2019) Mark S. Hipp et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- The Role of SurA PPIase Domains in Preventing Aggregation of the Outer-Membrane Proteins tOmpA and OmpT
- (2019) Julia R. Humes et al. JOURNAL OF MOLECULAR BIOLOGY
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- (2019) Serena Carra et al. CELL STRESS & CHAPERONES
- The First Community-Wide, Comparative Cross-linking Mass Spectrometry Study
- (2019) Claudio Iacobucci et al. ANALYTICAL CHEMISTRY
- Recommendations for performing, interpreting and reporting hydrogen deuterium exchange mass spectrometry (HDX-MS) experiments
- (2019) Glenn R. Masson et al. NATURE METHODS
- Single-Molecule Detection Reveals Different Roles of Skp and SurA as Chaperones
- (2018) Geng Li et al. ACS Chemical Biology
- Cross-Linking/Mass Spectrometry for Studying Protein Structures and Protein-Protein Interactions: Where Are We Now and Where Should We Go from Here?
- (2018) Andrea Sinz ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Folding Determinants of Transmembrane β-Barrels Using Engineered OMP Chimeras
- (2018) Deepti Chaturvedi et al. BIOCHEMISTRY
- Inhibitor of intramembrane protease RseP blocks the σEresponse causing lethal accumulation of unfolded outer membrane proteins
- (2018) Anna Konovalova et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Toward dynamic structural biology: Two decades of single-molecule Förster resonance energy transfer
- (2018) Eitan Lerner et al. SCIENCE
- The WD40 Protein BamB Mediates Coupling of BAM Complexes into Assembly Precincts in the Bacterial Outer Membrane
- (2018) Sachith D. Gunasinghe et al. Cell Reports
- Oligomerization of a molecular chaperone modulates its activity
- (2018) Tomohide Saio et al. eLife
- Dynamic action of the Sec machinery during initiation, protein translocation and termination
- (2018) Tomas Fessl et al. eLife
- Sequence-Specific Solution NMR Assignments of the β-Barrel Insertase BamA to Monitor Its Conformational Ensemble at the Atomic Level
- (2018) Jean-Baptiste Hartmann et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Precision and accuracy of single-molecule FRET measurements—a multi-laboratory benchmark study
- (2018) Björn Hellenkamp et al. NATURE METHODS
- C-terminal kink formation is required for lateral gating in BamA
- (2018) Karl Lundquist et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Rapid Mapping of Protein Interactions Using Tag-Transfer Photocrosslinkers
- (2018) Jim E. Horne et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Structural Basis of Membrane Protein Chaperoning through the Mitochondrial Intermembrane Space
- (2018) Katharina Weinhäupl et al. CELL
- A cross-linking/mass spectrometry workflow based on MS-cleavable cross-linkers and the MeroX software for studying protein structures and protein–protein interactions
- (2018) Claudio Iacobucci et al. Nature Protocols
- The PRIDE database and related tools and resources in 2019: improving support for quantification data
- (2018) Yasset Perez-Riverol et al. NUCLEIC ACIDS RESEARCH
- Pathways of cellular proteostasis in aging and disease
- (2017) Courtney L. Klaips et al. JOURNAL OF CELL BIOLOGY
- Effects of Periplasmic Chaperones and Membrane Thickness on BamA-Catalyzed Outer-Membrane Protein Folding
- (2017) Bob Schiffrin et al. JOURNAL OF MOLECULAR BIOLOGY
- Online Hydrogen-Deuterium Exchange Traveling Wave Ion Mobility Mass Spectrometry (HDX-IM-MS): a Systematic Evaluation
- (2017) Adam Cryar et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- The β-barrel assembly machinery in motion
- (2017) Nicholas Noinaj et al. NATURE REVIEWS MICROBIOLOGY
- The HSP90 chaperone machinery
- (2017) Florian H. Schopf et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- An evolutionarily conserved glycine-tyrosine motif forms a folding core in outer membrane proteins
- (2017) Marcin Michalik et al. PLoS One
- Accommodating Protein Dynamics in the Modeling of Chemical Crosslinks
- (2017) Matteo T. Degiacomi et al. STRUCTURE
- A Spring-Loaded Mechanism Governs the Clamp-like Dynamics of the Skp Chaperone
- (2017) Daniel A. Holdbrook et al. STRUCTURE
- The dynamic dimer structure of the chaperone Trigger Factor
- (2017) Leonor Morgado et al. Nature Communications
- Photon-HDF5: An Open File Format for Timestamp-Based Single-Molecule Fluorescence Experiments
- (2016) Antonino Ingargiola et al. BIOPHYSICAL JOURNAL
- The Activity of Escherichia coli Chaperone SurA Is Regulated by Conformational Changes Involving a Parvulin Domain
- (2016) Garner R. Soltes et al. JOURNAL OF BACTERIOLOGY
- A Supercomplex Spanning the Inner and Outer Membranes Mediates the Biogenesis of β-Barrel Outer Membrane Proteins in Bacteria
- (2016) Yan Wang et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- The Importance of Non-accessible Crosslinks and Solvent Accessible Surface Distance in Modeling Proteins with Restraints From Crosslinking Mass Spectrometry
- (2016) Joshua Matthew Allen Bullock et al. MOLECULAR & CELLULAR PROTEOMICS
- Structural basis for the antifolding activity of a molecular chaperone
- (2016) Chengdong Huang et al. NATURE
- Skp is a multivalent chaperone of outer-membrane proteins
- (2016) Bob Schiffrin et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules
- (2016) Haim Ashkenazy et al. NUCLEIC ACIDS RESEARCH
- In vivo aspects of protein folding and quality control
- (2016) D. Balchin et al. SCIENCE
- The GroEL–GroES Chaperonin Machine: A Nano-Cage for Protein Folding
- (2016) Manajit Hayer-Hartl et al. TRENDS IN BIOCHEMICAL SCIENCES
- Lateral opening in the intact β-barrel assembly machinery captured by cryo-EM
- (2016) Matthew G. Iadanza et al. Nature Communications
- Skp is a multivalent chaperone of outer-membrane proteins
- (2016) Bob Schiffrin et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- FRETBursts: An Open Source Toolkit for Analysis of Freely-Diffusing Single-Molecule FRET
- (2016) Antonino Ingargiola et al. PLoS One
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- XL-MS: Protein cross-linking coupled with mass spectrometry
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- Impact of holdase chaperones Skp and SurA on the folding of β-barrel outer-membrane proteins
- (2015) Johannes Thoma et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
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- (2015) Björn M. Burmann et al. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY
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- Impact of holdase chaperones Skp and SurA on the folding of β-barrel outer-membrane proteins
- (2015) Johannes Thoma et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Energetics of Membrane Protein Folding
- (2014) Karen G. Fleming Annual Review of Biophysics
- Mechanistic studies of the biogenesis and folding of outer membrane proteins in vitro and in vivo: What have we learned to date?
- (2014) Lindsay M. McMorran et al. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS
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- Distance restraints from crosslinking mass spectrometry: Mining a molecular dynamics simulation database to evaluate lysine-lysine distances
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- (2013) Andrew S. Thomas et al. BIOPHYSICAL JOURNAL
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- (2013) Ikenna R. Obi et al. INFECTION AND IMMUNITY
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- (2013) Lindsay M. McMorran et al. JOURNAL OF MOLECULAR BIOLOGY
- Conformation and dynamics of the periplasmic membrane-protein–chaperone complexes OmpX–Skp and tOmpA–Skp
- (2013) Björn M Burmann et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Membrane protein thermodynamic stability may serve as the energy sink for sorting in the periplasm
- (2013) C. Preston Moon et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Activity and Specificity of the Outer Membrane Protein Chaperone SurA Are Modulated by a Proline Isomerase Domain
- (2013) D. P. Ricci et al. mBio
- MtsslWizard: In Silico Spin-Labeling and Generation of Distance Distributions in PyMOL
- (2012) Gregor Hagelueken et al. APPLIED MAGNETIC RESONANCE
- Disentangling Subpopulations in Single-Molecule FRET and ALEX Experiments with Photon Distribution Analysis
- (2012) Toma E. Tomov et al. BIOPHYSICAL JOURNAL
- Solution NMR Studies of Membrane-Protein–Chaperone Complexes
- (2012) Björn M. Burmann et al. CHIMIA
- Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ1 and χ2 Dihedral Angles
- (2012) Robert B. Best et al. Journal of Chemical Theory and Computation
- A toolkit and benchmark study for FRET-restrained high-precision structural modeling
- (2012) Stanislav Kalinin et al. NATURE METHODS
- Smooth statistical torsion angle potential derived from a large conformational database via adaptive kernel density estimation improves the quality of NMR protein structures
- (2012) Guillermo A. Bermejo et al. PROTEIN SCIENCE
- The soluble, periplasmic domain of OmpA folds as an independent unit and displays chaperone activity by reducing the self-association propensity of the unfolded OmpA transmembrane β-barrel
- (2011) Emily J. Danoff et al. BIOPHYSICAL CHEMISTRY
- Identifying Molecular Dynamics in Single-Molecule FRET Experiments with Burst Variance Analysis
- (2011) Joseph P. Torella et al. BIOPHYSICAL JOURNAL
- The Fimbrial Usher FimD Follows the SurA-BamB Pathway for Its Assembly in the Outer Membrane of Escherichia coli
- (2011) C. Palomino et al. JOURNAL OF BACTERIOLOGY
- Accurate Distance Determination of Nucleic Acids via Förster Resonance Energy Transfer: Implications of Dye Linker Length and Rigidity
- (2011) Simon Sindbert et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Cleavable Cross-Linker for Protein Structure Analysis: Reliable Identification of Cross-Linking Products by Tandem MS
- (2010) Mathias Q. Müller et al. ANALYTICAL CHEMISTRY
- The role of SurA factor in outer membrane protein transport and virulence
- (2010) Susanne Behrens-Kneip INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY
- Self-Association of Unfolded Outer Membrane Proteins
- (2010) Alexandra Ebie Tan et al. MACROMOLECULAR BIOSCIENCE
- Dissection of β-barrel outer membrane protein assembly pathways through characterizing BamA POTRA 1 mutants of Escherichia coli
- (2010) Drew Bennion et al. MOLECULAR MICROBIOLOGY
- Reconstitution of Outer Membrane Protein Assembly from Purified Components
- (2010) C. L. Hagan et al. SCIENCE
- Urea, but not guanidinium, destabilizes proteins by forming hydrogen bonds to the peptide group
- (2009) Woon Ki Lim et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structural plasticity of an acid-activated chaperone allows promiscuous substrate binding
- (2009) T. L. Tapley et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Characterization of the role of the Escherichia coli periplasmic chaperone SurA using differential proteomics
- (2009) Didier Vertommen et al. PROTEOMICS
- GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation
- (2008) Berk Hess et al. Journal of Chemical Theory and Computation
- CHARMM-GUI: A web-based graphical user interface for CHARMM
- (2008) Sunhwan Jo et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Components of SurA Required for Outer Membrane Biogenesis in Uropathogenic Escherichia coli
- (2008) Kristin M. Watts et al. PLoS One
- Interactions with Hydrophobic Clusters in the Urea-Unfolded Membrane Protein OmpX
- (2007) Sebastian Hiller et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
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