Distance restraints from crosslinking mass spectrometry: Mining a molecular dynamics simulation database to evaluate lysine-lysine distances

In Vivo Protein Interaction Network Identified with a Novel Real-Time Cross-Linked Peptide Identification Strategy

(2013) Chad R. Weisbrod et al.   JOURNAL OF PROTEOME RESEARCH

Quantitative cross-linking/mass spectrometry using isotope-labelled cross-linkers

(2013) Lutz Fischer et al.   Journal of Proteomics

Mixed-Isotope Labeling with LC-IMS-MS for Characterization of Protein–Protein Interactions by Chemical Cross-Linking

(2013) Eric D. Merkley et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Cross-Link Guided Molecular Modeling with ROSETTA

(2013) Abdullah Kahraman et al.   PLoS One

Integrative Structural Biology

(2013) A. B. Ward et al.   SCIENCE

Structural Insights into Retinal Guanylylcyclase–GCAP-2 Interaction Determined by Cross-Linking and Mass Spectrometry

(2012) Jens Pettelkau et al.   BIOCHEMISTRY

A method for integrative structure determination of protein-protein complexes

(2012) Dina Schneidman-Duhovny et al.   BIOINFORMATICS

Expanding the Chemical Cross-Linking Toolbox by the Use of Multiple Proteases and Enrichment by Size Exclusion Chromatography

(2012) Alexander Leitner et al.   MOLECULAR & CELLULAR PROTEOMICS

False discovery rate estimation for cross-linked peptides identified by mass spectrometry

(2012) Thomas Walzthoeni et al.   NATURE METHODS

Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach

(2012) K. Lasker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein flexibility is key to cisplatin crosslinking in calmodulin

(2012) Huilin Li et al.   PROTEIN SCIENCE

Optimizing the enrichment of cross-linked products for mass spectrometric protein analysis

(2012) Romy Fritzsche et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Structural Probing of a Protein Phosphatase 2A Network by Chemical Cross-Linking and Mass Spectrometry

(2012) F. Herzog et al.   SCIENCE

Xwalk: computing and visualizing distances in cross-linking experiments

(2011) Abdullah Kahraman et al.   BIOINFORMATICS

Quaternary Diamines as Mass Spectrometry Cleavable Crosslinkers for Protein Interactions

(2011) Billy Clifford-Nunn et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Cross-linking Measurements ofIn VivoProtein Complex Topologies

(2011) Chunxiang Zheng et al.   MOLECULAR & CELLULAR PROTEOMICS

Combinatorial Electrostatic Collision-Induced Dissociative Chemical Cross-linking Reagents for Probing Protein Surface Topology

(2010) Fan Liu et al.   ANALYTICAL CHEMISTRY

Generation of a consensus protein domain dictionary

(2010) R. Dustin Schaeffer et al.   BIOINFORMATICS

Architecture of the RNA polymerase II–TFIIF complex revealed by cross-linking and mass spectrometry

(2010) Zhuo Angel Chen et al.   EMBO JOURNAL

Elucidating the higher-order structure of biopolymers by structural probing and mass spectrometry: MS3D

(2010) Daniele Fabris et al.   JOURNAL OF MASS SPECTROMETRY

Database Search Algorithm for Identification of Intact Cross-Links in Proteins and Peptides Using Tandem Mass Spectrometry

(2010) Hua Xu et al.   JOURNAL OF PROTEOME RESEARCH

Isotope Signatures Allow Identification of Chemically Cross-Linked Peptides by Mass Spectrometry: A Novel Method to Determine Interresidue Distances in Protein Structures through Cross-Linking

(2010) Alex Zelter et al.   JOURNAL OF PROTEOME RESEARCH

The beginning of a beautiful friendship: Cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes

(2010) Juri Rappsilber   JOURNAL OF STRUCTURAL BIOLOGY

Probing Native Protein Structures by Chemical Cross-linking, Mass Spectrometry, and Bioinformatics

(2010) Alexander Leitner et al.   MOLECULAR & CELLULAR PROTEOMICS

The dynameomics rotamer library: Amino acid side chain conformations and dynamics from comprehensive molecular dynamics simulations in water

(2010) Alexander D. Scouras et al.   PROTEIN SCIENCE

Dynameomics: A Comprehensive Database of Protein Dynamics

(2010) Marc W. van der Kamp et al.   STRUCTURE

Interactions of the Transmembrane Polymeric Rings of the Salmonella enterica Serovar Typhimurium Type III Secretion System

(2010) S. Sanowar et al.   mBio

Chemical cross-linking with NHS esters: a systematic study on amino acid reactivities

(2009) Stefanie Mädler et al.   JOURNAL OF MASS SPECTROMETRY

Chances and pitfalls of chemical cross-linking with amine-reactive N-hydroxysuccinimide esters

(2008) Stefan Kalkhof et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Partial Acetylation of Lysine Residues Improves Intraprotein Cross-Linking

(2008) Xin Guo et al.   ANALYTICAL CHEMISTRY

Probing protein structure by amino acid-specific covalent labeling and mass spectrometry

(2008) Vanessa Leah Mendoza et al.   MASS SPECTROMETRY REVIEWS

Erratum: Corrigendum: Identification of cross-linked peptides from large sequence databases

(2008) Oliver Rinner et al.   NATURE METHODS

Dynameomics: mass annotation of protein dynamics and unfolding in water by high-throughput atomistic molecular dynamics simulations

(2008) D. A.C. Beck et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Dynameomics: design of a computational lab workflow and scientific data repository for protein simulations

(2008) A. M. Simms et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Dynameomics: a multi-dimensional analysis-optimized database for dynamic protein data

(2008) C. Kehl et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Quantitative evaluation of the lengths of homobifunctional protein cross-linking reagents used as molecular rulers

(2002) Nora S. Green et al.   PROTEIN SCIENCE