A toolkit and benchmark study for FRET-restrained high-precision structural modeling

Filtered FCS: Species Auto- and Cross-Correlation Functions Highlight Binding and Dynamics in Biomolecules

(2012) Suren Felekyan et al.   CHEMPHYSCHEM

Single-Molecule Nanopositioning: Structural Transitions of a Helicase-DNA Complex during ATP Hydrolysis

(2011) Hamza Balci et al.   BIOPHYSICAL JOURNAL

Application of the Nano-Positioning System to the Analysis of Fluorescence Resonance Energy Transfer Networks

(2011) Adam Muschielok et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Accurate Distance Determination of Nucleic Acids via Förster Resonance Energy Transfer: Implications of Dye Linker Length and Rigidity

(2011) Simon Sindbert et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Structural Heterogeneity and Quantitative FRET Efficiency Distributions of Polyprolines through a Hybrid Atomistic Simulation and Monte Carlo Approach

(2011) Martin Hoefling et al.   PLoS One

Solution structure of the ESCRT-I complex by small-angle X-ray scattering, EPR, and FRET spectroscopy

(2011) E. Boura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Domain Orientation in the N-Terminal PDZ Tandem from PSD-95 Is Maintained in the Full-Length Protein

(2011) James J. McCann et al.   STRUCTURE

Characterizing Single-Molecule FRET Dynamics with Probability Distribution Analysis

(2010) Yusdi Santoso et al.   CHEMPHYSCHEM

Three-dimensional molecular modeling with single molecule FRET

(2010) Axel T. Brunger et al.   JOURNAL OF STRUCTURAL BIOLOGY

Global Structure of Forked DNA in Solution Revealed by High-Resolution Single-Molecule FRET

(2010) Tara Sabir et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Detecting the conformation of individual proteins in live cells

(2010) John J Sakon et al.   NATURE METHODS

Single-molecule FRET–derived model of the synaptotagmin 1–SNARE fusion complex

(2010) Ucheor B Choi et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Pushing the limits of what is achievable in protein–DNA docking: benchmarking HADDOCK’s performance

(2010) Marc van Dijk et al.   NUCLEIC ACIDS RESEARCH

Reverse transcriptase in motion: Conformational dynamics of enzyme–substrate interactions

(2009) Matthias Götte et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Impact of template overhang-binding region of HIV-1 RT on the binding and orientation of the duplex region of the template-primer

(2009) Alok K. Upadhyay et al.   MOLECULAR AND CELLULAR BIOCHEMISTRY

Protein Dynamism and Evolvability

(2009) N. Tokuriki et al.   SCIENCE

Characterizing Multiple Molecular States in Single-Molecule Multiparameter Fluorescence Detection by Probability Distribution Analysis

(2008) Stanislav Kalinin et al.   JOURNAL OF PHYSICAL CHEMISTRY B

A nano-positioning system for macromolecular structural analysis

(2008) Adam Muschielok et al.   NATURE METHODS

The RosettaDock server for local protein-protein docking

(2008) S. Lyskov et al.   NUCLEIC ACIDS RESEARCH

Single-molecule FRET measures bends and kinks in DNA

(2008) A. K. Wozniak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA