PVPred-SCM: Improved Prediction and Analysis of Phage Virion Proteins Using a Scoring Card Method

Large-Scale Assessment of Bioinformatics Tools for Lysine Succinylation Sites

(2019) Md. Mehedi Hasan et al.   Cells

PreAIP: Computational Prediction of Anti-inflammatory Peptides by Integrating Multiple Complementary Features

(2019) Mst. Shamima Khatun et al.   Frontiers in Genetics

Identification of Phage Viral Proteins With Hybrid Sequence Features

(2019) Xiaoqing Ru et al.   Frontiers in Microbiology

Advance in predicting subcellular localization of multi-label proteins and its implication for developing multi-target drugs

(2019) Kuo-Chen Chou   CURRENT MEDICINAL CHEMISTRY

ACPred: A Computational Tool for the Prediction and Analysis of Anticancer Peptides

(2019) Nalini Schaduangrat et al.   MOLECULES

HIVCoR: A sequence-based tool for predicting HIV-1 CRF01_AE coreceptor usage

(2019) Sayamon Hongjaisee et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

THPep: A machine learning-based approach for predicting tumor homing peptides

(2019) Watshara Shoombuatong et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

TargetAntiAngio: A Sequence-Based Tool for the Prediction and Analysis of Anti-Angiogenic Peptides

(2019) Vishuda Laengsri et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Progresses in Predicting Post-translational Modification

(2019) Kuo-Chen Chou   International Journal of Peptide Research and Therapeutics

Meta-4mCpred: A Sequence-Based Meta-Predictor for Accurate DNA 4mC Site Prediction Using Effective Feature Representation

(2019) Balachandran Manavalan et al.   Molecular Therapy-Nucleic Acids

Pred-BVP-Unb: Fast prediction of bacteriophage Virion proteins using un-biased multi-perspective properties with recursive feature elimination

(2019) Muhammad Arif et al.   GENOMICS

BioSeq-Analysis2.0: an updated platform for analyzing DNA, RNA and protein sequences at sequence level and residue level based on machine learning approaches

(2019) Bin Liu et al.   NUCLEIC ACIDS RESEARCH

Of capsid structure and stability: The partnership between charged residues of E-loop and P-domain of the bacteriophage P22 coat protein

(2019) Kunica Asija et al.   VIROLOGY

Meta-iAVP: A Sequence-Based Meta-Predictor for Improving the Prediction of Antiviral Peptides Using Effective Feature Representation

(2019) Nalini Schaduangrat et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

i4mC-ROSE, a bioinformatics tool for the identification of DNA N4-methylcytosine sites in the Rosaceae genome

(2019) Md. Mehedi Hasan et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

iQSP: A Sequence-Based Tool for the Prediction and Analysis of Quorum Sensing Peptides via Chou’s 5-Steps Rule and Informative Physicochemical Properties

(2019) Phasit Charoenkwan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences

(2018) Zhen Chen et al.   BIOINFORMATICS

Identification of Bacteriophage Virion Proteins Using Multinomial Naïve Bayes with g-Gap Feature Tree

(2018) Yanyuan Pan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Probing the origin of estrogen receptor alpha inhibition via large-scale QSAR study

(2018) Naravut Suvannang et al.   RSC Advances

PVP-SVM: Sequence-Based Prediction of Phage Virion Proteins Using a Support Vector Machine

(2018) Balachandran Manavalan et al.   Frontiers in Microbiology

PAAP: a web server for predicting antihypertensive activity of peptides

(2018) Thet Su Win et al.   Future Medicinal Chemistry

Identifying Phage Virion Proteins by Using Two-Step Feature Selection Methods

(2018) Jiu-Xin Tan et al.   MOLECULES

A comprehensive review of in silico analysis for protein S-sulfenylation sites

(2018) Mehedi Hasan et al.   PROTEIN AND PEPTIDE LETTERS

PIP-EL: A New Ensemble Learning Method for Improved Proinflammatory Peptide Predictions

(2018) Balachandran Manavalan et al.   Frontiers in Immunology

iBCE-EL: A New Ensemble Learning Framework for Improved Linear B-Cell Epitope Prediction

(2018) Balachandran Manavalan et al.   Frontiers in Immunology

mAHTPred: a sequence-based meta-predictor for improving the prediction of anti-hypertensive peptides using effective feature representation

(2018) Balachandran Manavalan et al.   BIOINFORMATICS

Exploring the contribution of bacteriophages to antibiotic resistance

(2017) Itziar Lekunberri et al.   ENVIRONMENTAL POLLUTION

HemoPred: a web server for predicting the hemolytic activity of peptides

(2017) Thet Su Win et al.   Future Medicinal Chemistry

pLoc-mVirus: Predict subcellular localization of multi-location virus proteins via incorporating the optimal GO information into general PseAAC

(2017) Xiang Cheng et al.   GENE

Phage Therapy’s Role in Combating Antibiotic-Resistant Pathogens

(2017) Jeff Lyon   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

pLoc-mPlant: predict subcellular localization of multi-location plant proteins by incorporating the optimal GO information into general PseAAC

(2017) Xiang Cheng et al.   Molecular BioSystems

iATC-mHyb: a hybrid multi-label classifier for predicting the classification of anatomical therapeutic chemicals

(2017) Xiang Cheng et al.   Oncotarget

PepBio: predicting the bioactivity of host defense peptides

(2017) Saw Simeon et al.   RSC Advances

CryoProtect: A Web Server for Classifying Antifreeze Proteins from Nonantifreeze Proteins

(2017) Reny Pratiwi et al.   Journal of Chemistry

iATC-mISF: a multi-label classifier for predicting the classes of anatomical therapeutic chemicals

(2016) Xiang Cheng et al.   BIOINFORMATICS

SCMBYK: prediction and characterization of bacterial tyrosine-kinases based on propensity scores of dipeptides

(2016) Tamara Vasylenko et al.   BMC BIOINFORMATICS

Extending proteochemometric modeling for unraveling the sorption behavior of compound–soil interaction

(2016) Watshara Shoombuatong et al.   CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS

osFP: a web server for predicting the oligomeric states of fluorescent proteins

(2016) Saw Simeon et al.   Journal of Cheminformatics

Proteomic Analysis of a Novel Bacillus Jumbo Phage Revealing Glycoside Hydrolase As Structural Component

(2016) Yihui Yuan et al.   Frontiers in Microbiology

protr/ProtrWeb: R package and web server for generating various numerical representation schemes of protein sequences

(2015) Nan Xiao et al.   BIOINFORMATICS

SCMPSP: Prediction and characterization of photosynthetic proteins based on a scoring card method

(2015) Tamara Vasylenko et al.   BMC BIOINFORMATICS

SCMMTP: identifying and characterizing membrane transport proteins using propensity scores of dipeptides

(2015) Yi-Fan Liou et al.   BMC GENOMICS

On the Origins of Hepatitis C Virus NS5B Polymerase Inhibitory Activity Using Machine Learning Approaches

(2015) Apilak Worachartcheewan et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

Computer-Aided Drug Design of Bioactive Natural Products

(2015) Veda Prachayasittikul et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

An Ensemble Method to Distinguish Bacteriophage Virion from Non-Virion Proteins Based on Protein Sequence Characteristics

(2015) Lina Zhang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Impacts of Bioinformatics to Medicinal Chemistry

(2015) Kuo-Chen Chou   Medicinal Chemistry

Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences

(2015) Bin Liu et al.   NUCLEIC ACIDS RESEARCH

SCMHBP: prediction and analysis of heme binding proteins using propensity scores of dipeptides

(2014) Yi-Fan Liou et al.   BMC BIOINFORMATICS

Identification of bacteriophage virion proteins by the ANOVA feature selection and analysis

(2014) Hui Ding et al.   Molecular BioSystems

Propensity Scores for Prediction and Characterization of Bioluminescent Proteins from Sequences

(2014) Hui-Ling Huang   PLoS One

Naïve Bayes Classifier with Feature Selection to Identify Phage Virion Proteins

(2013) Peng-Mian Feng et al.   Computational and Mathematical Methods in Medicine

Revenge of the phages: defeating bacterial defences

(2013) Julie E. Samson et al.   NATURE REVIEWS MICROBIOLOGY

SCMCRYS: Predicting Protein Crystallization Using an Ensemble Scoring Card Method with Estimating Propensity Scores of P-Collocated Amino Acid Pairs

(2013) Phasit Charoenkwan et al.   PLoS One

Prediction of human leukocyte antigen gene using k-nearest neighbour classifier based on spectrum kernel

(2013) Watshara Shoombuatong et al.   SCIENCEASIA

HIV-1 CRF01_AE coreceptor usage prediction using kernel methods based logistic model trees

(2012) Watshara Shoombuatong et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Artificial Neural Networks Trained to Detect Viral and Phage Structural Proteins

(2012) Victor Seguritan et al.   PLoS Computational Biology

Prediction of the disulphide bonding state of cysteines in proteins using Conditional Random Fields

(2011) Watshara Shoombuatong et al.   International Journal of Data Mining and Bioinformatics

Some remarks on protein attribute prediction and pseudo amino acid composition

(2010) Kuo-Chen Chou   JOURNAL OF THEORETICAL BIOLOGY

Mutations in fd phage major coat protein modulate affinity of the displayed peptide

(2009) G.A. Kuzmicheva et al.   PROTEIN ENGINEERING DESIGN & SELECTION

PseAAC: A flexible web server for generating various kinds of protein pseudo amino acid composition

(2007) Hong-Bin Shen et al.   ANALYTICAL BIOCHEMISTRY