PVP-SVM: Sequence-Based Prediction of Phage Virion Proteins Using a Support Vector Machine

iDNA6mA-PseKNC: Identifying DNA N 6 -methyladenosine sites by incorporating nucleotide physicochemical properties into PseKNC

(2018) Pengmian Feng et al.   GENOMICS

Exploring the contribution of bacteriophages to antibiotic resistance

(2017) Itziar Lekunberri et al.   ENVIRONMENTAL POLLUTION

PDC-SGB: Prediction of effective drug combinations using a stochastic gradient boosting algorithm

(2017) Qian Xu et al.   JOURNAL OF THEORETICAL BIOLOGY

Assessment of model accuracy estimations in CASP12

(2017) Andriy Kryshtafovych et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

DHSpred: support-vector-machine-based human DNase I hypersensitive sites prediction using the optimal features selected by random forest

(2017) Balachandran Manavalan et al.   Oncotarget

MLACP: machine-learning-based prediction of anticancer peptides

(2017) Balachandran Manavalan et al.   Oncotarget

IL17eScan: A Tool for the Identification of Peptides Inducing IL-17 Response

(2017) Sudheer Gupta et al.   Frontiers in Immunology

PhosphoPredict: A bioinformatics tool for prediction of human kinase-specific phosphorylation substrates and sites by integrating heterogeneous feature selection

(2017) Jiangning Song et al.   Scientific Reports

Prediction of cell-penetrating peptides with feature selection techniques

(2016) Hua Tang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

MethyRNA: a web server for identification of N6-methyladenosine sites

(2016) Wei Chen et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

iHyd-PseCp: Identify hydroxyproline and hydroxylysine in proteins by incorporating sequence-coupled effects into general PseAAC

(2016) Wang-Ren Qiu et al.   Oncotarget

Proteomic Analysis of a Novel Bacillus Jumbo Phage Revealing Glycoside Hydrolase As Structural Component

(2016) Yihui Yuan et al.   Frontiers in Microbiology

Crysalis: an integrated server for computational analysis and design of protein crystallization

(2016) Huilin Wang et al.   Scientific Reports

Prediction of Immunomodulatory potential of an RNA sequence for designing non-toxic siRNAs and RNA-based vaccine adjuvants

(2016) Kumardeep Chaudhary et al.   Scientific Reports

An Ensemble Method to Distinguish Bacteriophage Virion from Non-Virion Proteins Based on Protein Sequence Characteristics

(2015) Lina Zhang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Deep learning

(2015) Yann LeCun et al.   NATURE

Predicting cancerlectins by the optimal g-gap dipeptides

(2015) Hao Lin et al.   Scientific Reports

Improved feature-based prediction of SNPs in human cytochrome P450 enzymes

(2015) Li Li et al.   Interdisciplinary Sciences-Computational Life Sciences

An in silico platform for predicting, screening and designing of antihypertensive peptides

(2015) Ravi Kumar et al.   Scientific Reports

SMOQ: a tool for predicting the absolute residue-specific quality of a single protein model with support vector machines

(2014) Renzhi Cao et al.   BMC BIOINFORMATICS

Identification of bacteriophage virion proteins by the ANOVA feature selection and analysis

(2014) Hui Ding et al.   Molecular BioSystems

Random Forest-Based Protein Model Quality Assessment (RFMQA) Using Structural Features and Potential Energy Terms

(2014) Balachandran Manavalan et al.   PLoS One

iSS-PseDNC: Identifying Splicing Sites Using Pseudo Dinucleotide Composition

(2014) Wei Chen et al.   Biomed Research International

iHSP-PseRAAAC: Identifying the heat shock protein families using pseudo reduced amino acid alphabet composition

(2013) Peng-Mian Feng et al.   ANALYTICAL BIOCHEMISTRY

Naïve Bayes Classifier with Feature Selection to Identify Phage Virion Proteins

(2013) Peng-Mian Feng et al.   Computational and Mathematical Methods in Medicine

Identification of Antioxidants from Sequence Information Using Naïve Bayes

(2013) Peng-Mian Feng et al.   Computational and Mathematical Methods in Medicine

Learning from Bacteriophages - Advantages and Limitations of Phage and Phage-Encoded Protein Applications

(2013) Zuzanna Drulis-Kawa et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

Evolutionary, Structural and Functional Interplay of the IκB Family Members

(2013) Shaherin Basith et al.   PLoS One

FunSAV: Predicting the Functional Effect of Single Amino Acid Variants Using a Two-Stage Random Forest Model

(2012) Mingjun Wang et al.   PLoS One

An Integrative Computational Framework Based on a Two-Step Random Forest Algorithm Improves Prediction of Zinc-Binding Sites in Proteins

(2012) Cheng Zheng et al.   PLoS One

Prediction of heme binding residues from protein sequences with integrative sequence profiles

(2012) Yi Xiong et al.   Proteome Science

Artificial Neural Networks Trained to Detect Viral and Phage Structural Proteins

(2012) Victor Seguritan et al.   PLoS Computational Biology

DoBo: Protein domain boundary prediction by integrating evolutionary signals and machine learning

(2011) Jesse Eickholt et al.   BMC BIOINFORMATICS

In Silico Approach to Inhibition of Signaling Pathways of Toll-Like Receptors 2 and 4 by ST2L

(2011) Shaherin Basith et al.   PLoS One

Comparative Analysis of Species-Specific Ligand Recognition in Toll-Like Receptor 8 Signaling: A Hypothesis

(2011) Rajiv Gandhi Govindaraj et al.   PLoS One

Molecular modeling-based evaluation of dual function of IκBζ ankyrin repeat domain in toll-like receptor signaling

(2010) Balachandran Manavalan et al.   JOURNAL OF MOLECULAR RECOGNITION

Molecular Modeling-Based Evaluation of hTLR10 and Identification of Potential Ligands in Toll-Like Receptor Signaling

(2010) Rajiv Gandhi Govindaraj et al.   PLoS One

Structure-Function Relationship of Cytoplasmic and Nuclear IκB Proteins: An In Silico Analysis

(2010) Balachandran Manavalan et al.   PLoS One

Molecular modeling of the reductase domain to elucidate the reaction mechanism of reduction of peptidyl thioester into its corresponding alcohol in non-ribosomal peptide synthetases

(2010) Balachandran Manavalan et al.   BMC STRUCTURAL BIOLOGY

Evaluating the absolute quality of a single protein model using structural features and support vector machines

(2008) Zheng Wang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS