An Ensemble Method to Distinguish Bacteriophage Virion from Non-Virion Proteins Based on Protein Sequence Characteristics

An Ensemble Method with Hybrid Features to Identify Extracellular Matrix Proteins

(2015) Runtao Yang et al.   PLoS One

Bacterial Detection Using Unlabeled Phage Amplification and Mass Spectrometry through Structural and Nonstructural Phage Markers

(2014) Armelle Martelet et al.   JOURNAL OF PROTEOME RESEARCH

Identification of bacteriophage virion proteins by the ANOVA feature selection and analysis

(2014) Hui Ding et al.   Molecular BioSystems

LAceP: Lysine Acetylation Site Prediction Using Logistic Regression Classifiers

(2014) Ting Hou et al.   PLoS One

Sequence Based Prediction of DNA-Binding Proteins Based on Hybrid Feature Selection Using Random Forest and Gaussian Naïve Bayes

(2014) Wangchao Lou et al.   PLoS One

enDNA-Prot: Identification of DNA-Binding Proteins by Applying Ensemble Learning

(2014) Ruifeng Xu et al.   Biomed Research International

iHSP-PseRAAAC: Identifying the heat shock protein families using pseudo reduced amino acid alphabet composition

(2013) Peng-Mian Feng et al.   ANALYTICAL BIOCHEMISTRY

Predicting protein-ATP binding sites from primary sequence through fusing bi-profile sampling of multi-view features

(2013) Ya-Nan Zhang et al.   BMC BIOINFORMATICS

An improved sequence based prediction protocol for DNA-binding proteins using SVM and comprehensive feature analysis

(2013) Chuanxin Zou et al.   BMC BIOINFORMATICS

Naïve Bayes Classifier with Feature Selection to Identify Phage Virion Proteins

(2013) Peng-Mian Feng et al.   Computational and Mathematical Methods in Medicine

An Ensemble Method for Predicting Subnuclear Localizations from Primary Protein Structures

(2013) Guo Sheng Han et al.   PLoS One

Prediction of S-Glutathionylation Sites Based on Protein Sequences

(2013) Chenglei Sun et al.   PLoS One

AcalPred: A Sequence-Based Tool for Discriminating between Acidic and Alkaline Enzymes

(2013) Hao Lin et al.   PLoS One

Using ensemble SVM to identify human GPCRs N-linked glycosylation sites based on the general form of Chou's PseAAC

(2013) H.-L. Xie et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Predicting protein oxidation sites with feature selection and analysis approach

(2012) Shen Niu et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Computational prediction and analysis of protein γ-carboxylation sites based on a random forest method

(2012) Ning Zhang et al.   Molecular BioSystems

An Ensemble Classifier for Eukaryotic Protein Subcellular Location Prediction Using Gene Ontology Categories and Amino Acid Hydrophobicity

(2012) Liqi Li et al.   PLoS One

Prediction of Protein Domain with mRMR Feature Selection and Analysis

(2012) Bi-Qing Li et al.   PLoS One

Using Random Forest Algorithm to Predict β-Hairpin Motifs

(2012) Shao-Chun Jia et al.   PROTEIN AND PEPTIDE LETTERS

Artificial Neural Networks Trained to Detect Viral and Phage Structural Proteins

(2012) Victor Seguritan et al.   PLoS Computational Biology

Predicting protein submitochondria locations by combining different descriptors into the general form of Chou’s pseudo amino acid composition

(2011) Guo-Liang Fan et al.   AMINO ACIDS

Prediction of transporter targets using efficient RBF networks with PSSM profiles and biochemical properties

(2011) Shu-An Chen et al.   BIOINFORMATICS

Prediction of ketoacyl synthase family using reduced amino acid alphabets

(2011) Wei Chen et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

UniProt Knowledgebase: a hub of integrated protein data

(2011) M. Magrane et al.   Database-The Journal of Biological Databases and Curation

Predicting protein–protein interactions from protein sequences using meta predictor

(2010) Jun-Feng Xia et al.   AMINO ACIDS

Hybrid approaches to attribute reduction based on indiscernibility and discernibility relation

(2010) J. Qian et al.   INTERNATIONAL JOURNAL OF APPROXIMATE REASONING

Some remarks on protein attribute prediction and pseudo amino acid composition

(2010) Kuo-Chen Chou   JOURNAL OF THEORETICAL BIOLOGY

High Affinity Human Antibody Fragments to Dengue Virus Non-Structural Protein 3

(2010) Nicole J. Moreland et al.   PLoS Neglected Tropical Diseases

Ensemble-based classifiers

(2009) Lior Rokach   ARTIFICIAL INTELLIGENCE REVIEW

Mutations in fd phage major coat protein modulate affinity of the displayed peptide

(2009) G.A. Kuzmicheva et al.   PROTEIN ENGINEERING DESIGN & SELECTION

RSLpred: an integrative system for predicting subcellular localization of rice proteins combining compositional and evolutionary information

(2009) Rakesh Kaundal et al.   PROTEOMICS

VirulentPred: a SVM based prediction method for virulent proteins in bacterial pathogens

(2008) Aarti Garg et al.   BMC BIOINFORMATICS

Structural and Nonstructural Protein Genome Regions of Eastern Equine Encephalitis Virus Are Determinants of Interferon Sensitivity and Murine Virulence

(2008) P. V. Aguilar et al.   JOURNAL OF VIROLOGY

A proteomic approach to the identification of the major virion structural proteins of the marine cyanomyovirus S-PM2

(2008) M. R. J. Clokie et al.   MICROBIOLOGY-SGM

Differentiation between two-state and multi-state folding proteins based on sequence

(2008) Ji-Tao Huang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS