iQSP: A Sequence-Based Tool for the Prediction and Analysis of Quorum Sensing Peptides via Chou’s 5-Steps Rule and Informative Physicochemical Properties

iMotor-CNN: Identifying molecular functions of cytoskeleton motor proteins using 2D convolutional neural network via Chou's 5-step rule

(2019) Nguyen Quoc Khanh Le et al.   ANALYTICAL BIOCHEMISTRY

iEnhancer-5Step: Identifying enhancers using hidden information of DNA sequences via Chou's 5-step rule and word embedding

(2019) Nguyen Quoc Khanh Le et al.   ANALYTICAL BIOCHEMISTRY

PEPred-Suite: improved and robust prediction of therapeutic peptides using adaptive feature representation learning

(2019) Leyi Wei et al.   BIOINFORMATICS

Advance in predicting subcellular localization of multi-label proteins and its implication for developing multi-target drugs

(2019) Kuo-Chen Chou   CURRENT MEDICINAL CHEMISTRY

mACPpred: A Support Vector Machine-Based Meta-Predictor for Identification of Anticancer Peptides

(2019) Vinothini Boopathi et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

SPrenylC-PseAAC: A sequence-based model developed via Chou's 5-steps rule and general PseAAC for identifying S-prenylation sites in proteins

(2019) Waqar Hussain et al.   JOURNAL OF THEORETICAL BIOLOGY

ACPred: A Computational Tool for the Prediction and Analysis of Anticancer Peptides

(2019) Nalini Schaduangrat et al.   MOLECULES

Bacterial quorum sensing in complex and dynamically changing environments

(2019) Sampriti Mukherjee et al.   NATURE REVIEWS MICROBIOLOGY

Quorum Sensing: A Prospective Therapeutic Target for Bacterial Diseases

(2019) Qian Jiang et al.   Biomed Research International

HIVCoR: A sequence-based tool for predicting HIV-1 CRF01_AE coreceptor usage

(2019) Sayamon Hongjaisee et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

THPep: A machine learning-based approach for predicting tumor homing peptides

(2019) Watshara Shoombuatong et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Prediction of lysine formylation sites using the composition of k-spaced amino acid pairs via Chou's 5-steps rule and general pseudo components

(2019) Zhe Ju et al.   GENOMICS

TargetAntiAngio: A Sequence-Based Tool for the Prediction and Analysis of Anti-Angiogenic Peptides

(2019) Vishuda Laengsri et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Progresses in Predicting Post-translational Modification

(2019) Kuo-Chen Chou   International Journal of Peptide Research and Therapeutics

Meta-4mCpred: A Sequence-Based Meta-Predictor for Accurate DNA 4mC Site Prediction Using Effective Feature Representation

(2019) Balachandran Manavalan et al.   Molecular Therapy-Nucleic Acids

XG-PseU: an eXtreme Gradient Boosting based method for identifying pseudouridine sites

(2019) Kewei Liu et al.   MOLECULAR GENETICS AND GENOMICS

Meta-iAVP: A Sequence-Based Meta-Predictor for Improving the Prediction of Antiviral Peptides Using Effective Feature Representation

(2019) Nalini Schaduangrat et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

iPhosH-PseAAC: Identify Phosphohistidine Sites in Proteins by Blending Statistical Moments and Position Relative Features According to the Chou's 5-Step Rule and General Pseudo Amino Acid Composition

(2019) Muhammad Awais et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Deep learning improves antimicrobial peptide recognition

(2018) Daniel Veltri et al.   BIOINFORMATICS

Interference in Bacterial Quorum Sensing: A Biopharmaceutical Perspective

(2018) Benjamin Rémy et al.   Frontiers in Pharmacology

SnapShot: Bacterial Quorum Sensing

(2018) Michaela J. Eickhoff et al.   CELL

PAAP: a web server for predicting antihypertensive activity of peptides

(2018) Thet Su Win et al.   Future Medicinal Chemistry

PIP-EL: A New Ensemble Learning Method for Improved Proinflammatory Peptide Predictions

(2018) Balachandran Manavalan et al.   Frontiers in Immunology

iBCE-EL: A New Ensemble Learning Framework for Improved Linear B-Cell Epitope Prediction

(2018) Balachandran Manavalan et al.   Frontiers in Immunology

mAHTPred: a sequence-based meta-predictor for improving the prediction of anti-hypertensive peptides using effective feature representation

(2018) Balachandran Manavalan et al.   BIOINFORMATICS

iPhosY-PseAAC: identify phosphotyrosine sites by incorporating sequence statistical moments into PseAAC

(2018) Yaser Daanial Khan et al.   MOLECULAR BIOLOGY REPORTS

SPalmitoylC-PseAAC: A sequence-based model developed via Chou's 5-steps rule and general PseAAC for identifying S-palmitoylation sites in proteins

(2018) Waqar Hussain et al.   ANALYTICAL BIOCHEMISTRY

HemoPred: a web server for predicting the hemolytic activity of peptides

(2017) Thet Su Win et al.   Future Medicinal Chemistry

pLoc-mVirus: Predict subcellular localization of multi-location virus proteins via incorporating the optimal GO information into general PseAAC

(2017) Xiang Cheng et al.   GENE

iKcr-PseEns: Identify lysine crotonylation sites in histone proteins with pseudo components and ensemble classifier

(2017) Wang-Ren Qiu et al.   GENOMICS

pLoc-mPlant: predict subcellular localization of multi-location plant proteins by incorporating the optimal GO information into general PseAAC

(2017) Xiang Cheng et al.   Molecular BioSystems

Progress in and promise of bacterial quorum sensing research

(2017) Marvin Whiteley et al.   NATURE

China in action: national strategies to combat against emerging infectious diseases

(2017) Min Han et al.   Science China-Life Sciences

Complete genome sequence of a novel bacteriophage infecting Bradyrhizobium diazoefficiens USDA110

(2017) Junjie Liu et al.   Science China-Life Sciences

iATC-mHyb: a hybrid multi-label classifier for predicting the classification of anatomical therapeutic chemicals

(2017) Xiang Cheng et al.   Oncotarget

iRNAm5C-PseDNC: identifying RNA 5-methylcytosine sites by incorporating physical-chemical properties into pseudo dinucleotide composition

(2017) Wang-Ren Qiu et al.   Oncotarget

PepBio: predicting the bioactivity of host defense peptides

(2017) Saw Simeon et al.   RSC Advances

CryoProtect: A Web Server for Classifying Antifreeze Proteins from Nonantifreeze Proteins

(2017) Reny Pratiwi et al.   Journal of Chemistry

Peptides as Quorum Sensing Molecules: Measurement Techniques and Obtained Levels In vitro and In vivo

(2017) Frederick Verbeke et al.   Frontiers in Neuroscience

Inhibition of Pseudomonas aeruginosa quorum sensing by subinhibitory concentrations of curcumin with gentamicin and azithromycin

(2017) Shahin Bahari et al.   Journal of Global Antimicrobial Resistance

iRNA-PseColl: Identifying the Occurrence Sites of Different RNA Modifications by Incorporating Collective Effects of Nucleotides into PseKNC

(2017) Pengmian Feng et al.   Molecular Therapy-Nucleic Acids

Exploiting the antivirulence efficacy of an ajoene-ciprofloxacin combination againstPseudomonas aeruginosabiofilm associated murine acute pyelonephritis

(2016) Anitha Vadekeetil et al.   BIOFOULING

iATC-mISF: a multi-label classifier for predicting the classes of anatomical therapeutic chemicals

(2016) Xiang Cheng et al.   BIOINFORMATICS

iRSpot-EL: identify recombination spots with an ensemble learning approach

(2016) Bin Liu et al.   BIOINFORMATICS

Extending proteochemometric modeling for unraveling the sorption behavior of compound–soil interaction

(2016) Watshara Shoombuatong et al.   CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS

Auto Poisoning of the Respiratory Chain by a Quorum-Sensing-Regulated Molecule Favors Biofilm Formation and Antibiotic Tolerance

(2016) Ronen Hazan et al.   CURRENT BIOLOGY

Relationship between pathogenic, clinical, and virulence factors of Staphylococcus aureus in infective endocarditis versus uncomplicated bacteremia: a case–control study

(2016) M. M. Gallardo-García et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

SuccinSite: a computational tool for the prediction of protein succinylation sites by exploiting the amino acid patterns and properties

(2016) Md. Mehedi Hasan et al.   Molecular BioSystems

Quorum sensing signal–response systems in Gram-negative bacteria

(2016) Kai Papenfort et al.   NATURE REVIEWS MICROBIOLOGY

osFP: a web server for predicting the oligomeric states of fluorescent proteins

(2016) Saw Simeon et al.   Journal of Cheminformatics

iACP: a sequence-based tool for identifying anticancer peptides

(2016) Wei Chen et al.   Oncotarget

iOri-Human: identify human origin of replication by incorporating dinucleotide physicochemical properties into pseudo nucleotide composition

(2016) Chang-Jian Zhang et al.   Oncotarget

iRNA-AI: identifying the adenosine to inosine editing sites in RNA sequences

(2016) Wei Chen et al.   Oncotarget

Bacillus sp. QSI-1 Modulate Quorum Sensing Signals Reduce Aeromonas hydrophila Level and Alter Gut Microbial Community Structure in Fish

(2016) Shuxin Zhou et al.   Frontiers in Cellular and Infection Microbiology

Exploring the chemical space of influenza neuraminidase inhibitors

(2016) Nuttapat Anuwongcharoen et al.   PeerJ

Impairment of Pseudomonas aeruginosa Biofilm Resistance to Antibiotics by Combining the Drugs with a New Quorum-Sensing Inhibitor

(2015) Aurelie Furiga et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

iEnhancer-2L: a two-layer predictor for identifying enhancers and their strength by pseudok-tuple nucleotide composition

(2015) Bin Liu et al.   BIOINFORMATICS

Characterizing informative sequence descriptors and predicting binding affinities of heterodimeric protein complexes

(2015) Yerukala Srinivasulu et al.   BMC BIOINFORMATICS

On the Origins of Hepatitis C Virus NS5B Polymerase Inhibitory Activity Using Machine Learning Approaches

(2015) Apilak Worachartcheewan et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

Sequence based human leukocyte antigen gene prediction using informative physicochemical properties

(2015) Watshara Shoombuatong et al.   International Journal of Data Mining and Bioinformatics

Impacts of Bioinformatics to Medicinal Chemistry

(2015) Kuo-Chen Chou   Medicinal Chemistry

Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences

(2015) Bin Liu et al.   NUCLEIC ACIDS RESEARCH

Prediction and Analysis of Quorum Sensing Peptides Based on Sequence Features

(2015) Akanksha Rajput et al.   PLoS One

Predicting Metabolic Syndrome Using the Random Forest Method

(2015) Apilak Worachartcheewan et al.   TheScientificWorldJOURNAL

Predicting Metabolic Syndrome Using the Random Forest Method

(2015) Apilak Worachartcheewan et al.   Scientific World Journal

Building Predictive Models inRUsing thecaretPackage

(2015) Max Kuhn   Journal of Statistical Software

Identification of Real MicroRNA Precursors with a Pseudo Structure Status Composition Approach

(2015) Bin Liu et al.   PLoS One

Peptide conversations in Gram-positive bacteria

(2014) Véronique Monnet et al.   CRITICAL REVIEWS IN MICROBIOLOGY

The hierarchy quorum sensing network in Pseudomonas aeruginosa

(2014) Jasmine Lee et al.   Protein & Cell

Acyl-Homoserine Lactone Quorum Sensing: From Evolution to Application

(2013) Martin Schuster et al.   Annual Review of Microbiology

Overfitting in prediction models – Is it a problem only in high dimensions?

(2013) Jyothi Subramanian et al.   Contemporary Clinical Trials

SCMCRYS: Predicting Protein Crystallization Using an Ensemble Scoring Card Method with Estimating Propensity Scores of P-Collocated Amino Acid Pairs

(2013) Phasit Charoenkwan et al.   PLoS One

Prediction of human leukocyte antigen gene using k-nearest neighbour classifier based on spectrum kernel

(2013) Watshara Shoombuatong et al.   SCIENCEASIA

Bacterial Quorum Sensing: Its Role in Virulence and Possibilities for Its Control

(2013) S. T. Rutherford et al.   Cold Spring Harbor Perspectives in Medicine

HIV-1 CRF01_AE coreceptor usage prediction using kernel methods based logistic model trees

(2012) Watshara Shoombuatong et al.   COMPUTERS IN BIOLOGY AND MEDICINE

α-Hydroxyketone Synthesis and Sensing by Legionella and Vibrio

(2012) André Tiaden et al.   SENSORS

Quorum Sensing Inhibitors Increase the Susceptibility of Bacterial Biofilms to Antibiotics In Vitro and In Vivo

(2011) Gilles Brackman et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

pROC: an open-source package for R and S+ to analyze and compare ROC curves

(2011) Xavier Robin et al.   BMC BIOINFORMATICS

Some remarks on protein attribute prediction and pseudo amino acid composition

(2010) Kuo-Chen Chou   JOURNAL OF THEORETICAL BIOLOGY

Cell-PLoc: a package of Web servers for predicting subcellular localization of proteins in various organisms

(2008) Kuo-Chen Chou et al.   Nature Protocols

PseAAC: A flexible web server for generating various kinds of protein pseudo amino acid composition

(2007) Hong-Bin Shen et al.   ANALYTICAL BIOCHEMISTRY