SCMBYK: prediction and characterization of bacterial tyrosine-kinases based on propensity scores of dipeptides

Tuberculosis—advances in development of new drugs, treatment regimens, host-directed therapies, and biomarkers

(2016) Robert S Wallis et al.   LANCET INFECTIOUS DISEASES

Protein Phosphatases of Pathogenic Bacteria: Role in Physiology and Virulence

(2015) Andaleeb Sajid et al.   Annual Review of Microbiology

SCMPSP: Prediction and characterization of photosynthetic proteins based on a scoring card method

(2015) Tamara Vasylenko et al.   BMC BIOINFORMATICS

Metrics for the Human Proteome Project 2015: Progress on the Human Proteome and Guidelines for High-Confidence Protein Identification

(2015) Gilbert S. Omenn et al.   JOURNAL OF PROTEOME RESEARCH

Therapeutic strategies for anchored kinases and phosphatases: exploiting short linear motifs and intrinsic disorder

(2015) Patrick J. Nygren et al.   Frontiers in Pharmacology

SCMHBP: prediction and analysis of heme binding proteins using propensity scores of dipeptides

(2014) Yi-Fan Liou et al.   BMC BIOINFORMATICS

Evolution of Bacterial Protein-Tyrosine Kinases and Their Relaxed Specificity Toward Substrates

(2014) Lei Shi et al.   Genome Biology and Evolution

Propensity Scores for Prediction and Characterization of Bioluminescent Proteins from Sequences

(2014) Hui-Ling Huang   PLoS One

Exoproteome and Secretome Derived Broad Spectrum Novel Drug and Vaccine Candidates in Vibrio cholerae Targeted by Piper betel Derived Compounds

(2013) Debmalya Barh et al.   PLoS One

SCMCRYS: Predicting Protein Crystallization Using an Ensemble Scoring Card Method with Estimating Propensity Scores of P-Collocated Amino Acid Pairs

(2013) Phasit Charoenkwan et al.   PLoS One

Assessing the relationship between conservation of function and conservation of sequence using photosynthetic proteins

(2012) Shaul Ashkenazi et al.   BIOINFORMATICS

Bacterial tyrosine kinases: evolution, biological function and structural insights

(2012) C. Grangeasse et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Identification of Nucleotide-Binding Sites in Protein Structures: A Novel Approach Based on Nucleotide Modularity

(2012) Luca Parca et al.   PLoS One

LIBSVM

(2012) Chih-Chung Chang et al.   ACM Transactions on Intelligent Systems and Technology

Literature mining, ontologies and information visualization for drug repurposing

(2011) C. Andronis et al.   BRIEFINGS IN BIOINFORMATICS

BYKdb: the Bacterial protein tYrosine Kinase database

(2011) F. Jadeau et al.   NUCLEIC ACIDS RESEARCH

Bacterial tyrosine-kinases: Structure–function analysis and therapeutic potential

(2009) Christophe Grangeasse et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

A generic method for assignment of reliability scores applied to solvent accessibility predictions

(2009) Bent Petersen et al.   BMC STRUCTURAL BIOLOGY

Structure of Escherichia coli tyrosine kinase Etk reveals a novel activation mechanism

(2008) Daniel C Lee et al.   EMBO JOURNAL

Sequence-structure relationships in polysaccharide co-polymerase (PCP) proteins

(2008) Renato Morona et al.   TRENDS IN BIOCHEMICAL SCIENCES

Structural Basis for the Regulation Mechanism of the Tyrosine Kinase CapB from Staphylococcus aureus

(2008) Vanesa Olivares-Illana et al.   PLOS BIOLOGY