PepBio: predicting the bioactivity of host defense peptides

The parameter sensitivity of random forests

(2016) Barbara F.F. Huang et al.   BMC BIOINFORMATICS

Threonine modulates immune response, antioxidant status and gene expressions of antioxidant enzymes and antioxidant-immune-cytokine-related signaling molecules in juvenile blunt snout bream ( Megalobrama amblycephala )

(2016) Habte-Michael Habte-Tsion et al.   FISH & SHELLFISH IMMUNOLOGY

Self-assembling peptide nanofibers containing phenylalanine for the controlled release of 5-fluorouracil

(2016) N Ashwanikumar et al.   International Journal of Nanomedicine

Archetypal tryptophan-rich antimicrobial peptides: properties and applications

(2016) Nadin Shagaghi et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Overlap and diversity in antimicrobial peptide databases: compiling a non-redundant set of sequences

(2015) Longendri Aguilera-Mendoza et al.   BIOINFORMATICS

protr/ProtrWeb: R package and web server for generating various numerical representation schemes of protein sequences

(2015) Nan Xiao et al.   BIOINFORMATICS

ProtDCal: A program to compute general-purpose-numerical descriptors for sequences and 3D-structures of proteins

(2015) Yasser B Ruiz-Blanco et al.   BMC BIOINFORMATICS

QSAR modeling of the antimicrobial activity of peptides as a mathematical function of a sequence of amino acids

(2015) Mariya A. Toropova et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

A deficiency or an excess of dietary threonine level affects weight gain, enzyme activity, immune response and immune-related gene expression in juvenile blunt snout bream (Megalobrama amblycephala)

(2015) Habte-Michael Habte-Tsion et al.   FISH & SHELLFISH IMMUNOLOGY

Novel 3D bio-macromolecular bilinear descriptors for protein science: Predicting protein structural classes

(2015) Yovani Marrero-Ponce et al.   JOURNAL OF THEORETICAL BIOLOGY

Peptide-based antifungal therapies against emerging infections

(2015) A. Matejuk et al.   DRUGS OF THE FUTURE

Building Predictive Models inRUsing thecaretPackage

(2015) Max Kuhn   Journal of Statistical Software

Transformation of Human Cathelicidin LL-37 into Selective, Stable, and Potent Antimicrobial Compounds

(2014) Guangshun Wang et al.   ACS Chemical Biology

dbaasp: database of antimicrobial activity and structure of peptides

(2014) Giorgi Gogoladze et al.   FEMS MICROBIOLOGY LETTERS

Prediction of Linear Cationic Antimicrobial Peptides Based on Characteristics Responsible for Their Interaction with the Membranes

(2014) Boris Vishnepolsky et al.   Journal of Chemical Information and Modeling

Role of Phenylalanine and Valine10 Residues in the Antimicrobial Activity and Cytotoxicity of Piscidin-1

(2014) Eunjung Lee et al.   PLoS One

iAMP-2L: A two-level multi-label classifier for identifying antimicrobial peptides and their functional types

(2013) Xuan Xiao et al.   ANALYTICAL BIOCHEMISTRY

Inhibitory activity and mechanism of two scorpion venom peptides against herpes simplex virus type 1

(2013) Wei Hong et al.   ANTIVIRAL RESEARCH

Data Set Modelability by QSAR

(2013) Alexander Golbraikh et al.   Journal of Chemical Information and Modeling

Analysis and Prediction of Highly Effective Antiviral Peptides Based on Random Forests

(2013) Kuan Y. Chang et al.   PLoS One

Targeting MDR in breast and lung cancer: Discriminating its potential importance from the failure of drug resistance reversal studies

(2012) Laleh Amiri-Kordestani et al.   DRUG RESISTANCE UPDATES

Role of Helicity on the Anticancer Mechanism of Action of Cationic-Helical Peptides

(2012) Yi-Bing Huang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The study of single anticancer peptides interacting with HeLa cell membranes by single molecule force spectroscopy

(2012) Yuping Shan et al.   Nanoscale

Multiple Immune-Modulatory Functions Of Cathelicidin Host Defense Peptides

(2012) Ka-Yee (Grace) Choi et al.   Frontiers in Immunology

Oncolytic Activities of Host Defense Peptides

(2011) Sammy Al-Benna et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Update of PROFEAT: a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence

(2011) H. B. Rao et al.   NUCLEIC ACIDS RESEARCH

Connecting Peptide Physicochemical and Antimicrobial Properties by a Rational Prediction Model

(2011) Marc Torrent et al.   PLoS One

Effect of BMAP-28 Antimicrobial Peptides on Leishmania major Promastigote and Amastigote Growth: Role of Leishmanolysin in Parasite Survival

(2011) Miriam A. Lynn et al.   PLoS Neglected Tropical Diseases

Structural determinants of host defense peptides for antimicrobial activity and target cell selectivity

(2010) Daisuke Takahashi et al.   BIOCHIMIE

Possible links between intestinal permeablity and food processing: a potential therapeutic niche for glutamine

(2010) Jean Robert Rapin et al.   Clinics

Advances in computational methods to predict the biological activity of compounds

(2010) Chanin Nantasenamat et al.   Expert Opinion on Drug Discovery

Drosomycin, an essential component of antifungal defence inDrosophila

(2009) Z-T. Zhang et al.   INSECT MOLECULAR BIOLOGY

Open-source machine learning: R meets Weka

(2008) Kurt Hornik et al.   COMPUTATIONAL STATISTICS

APD2: the updated antimicrobial peptide database and its application in peptide design

(2008) Guangshun Wang et al.   NUCLEIC ACIDS RESEARCH

Studies on anticancer activities of antimicrobial peptides

(2007) David W. Hoskin et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Structural and functional characterization of the porcine proline–rich antifungal peptide SP-B isolated from salivary gland granules

(2007) T. Cabras et al.   JOURNAL OF PEPTIDE SCIENCE