Identification of bacteriophage virion proteins by the ANOVA feature selection and analysis

Predicting Human Protein Subcellular Locations by the Ensemble of Multiple Predictors via Protein-Protein Interaction Network with Edge Clustering Coefficients

(2014) Pufeng Du et al.   PLoS One

iAMP-2L: A two-level multi-label classifier for identifying antimicrobial peptides and their functional types

(2013) Xuan Xiao et al.   ANALYTICAL BIOCHEMISTRY

hCKSAAP_UbSite: Improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties

(2013) Zhen Chen et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Predicting network of drug–enzyme interaction based on machine learning method

(2013) Bing Niu et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

A sequence-based computational approach to predicting PDZ domain-peptide interactions

(2013) Songyot Nakariyakul et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Prediction of Golgi-resident protein types by using feature selection technique

(2013) Hui Ding et al.   CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS

iCDI-PseFpt: Identify the channel–drug interaction in cellular networking with PseAAC and molecular fingerprints

(2013) Xuan Xiao et al.   JOURNAL OF THEORETICAL BIOLOGY

iLoc-Animal: a multi-label learning classifier for predicting subcellular localization of animal proteins

(2013) Wei-Zhong Lin et al.   Molecular BioSystems

Some remarks on predicting multi-label attributes in molecular biosystems

(2013) Kuo-Chen Chou   Molecular BioSystems

Analysis of Novel Mycobacteriophages Indicates the Existence of Different Strategies for Phage Inheritance in Mycobacteria

(2013) Emma J. Stella et al.   PLoS One

AcalPred: A Sequence-Based Tool for Discriminating between Acidic and Alkaline Enzymes

(2013) Hao Lin et al.   PLoS One

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Subcellular localization prediction for human internal and organelle membrane proteins with projected gene ontology scores

(2012) Pufeng Du et al.   JOURNAL OF THEORETICAL BIOLOGY

Update on activities at the Universal Protein Resource (UniProt) in 2013

(2012)   NUCLEIC ACIDS RESEARCH

iNR-PhysChem: A Sequence-Based Predictor for Identifying Nuclear Receptors and Their Subfamilies via Physical-Chemical Property Matrix

(2012) Xuan Xiao et al.   PLoS One

iNuc-PhysChem: A Sequence-Based Predictor for Identifying Nucleosomes via Physicochemical Properties

(2012) Wei Chen et al.   PLoS One

iLoc-Gpos: A Multi-Layer Classifier for Predicting the Subcellular Localization of Singleplex and Multiplex Gram-Positive Bacterial Proteins

(2012) Zhi-Cheng Wu et al.   PROTEIN AND PEPTIDE LETTERS

Prediction of the types of ion channel-targeted conotoxins based on radial basis function network

(2012) Lu-Feng Yuan et al.   TOXICOLOGY IN VITRO

Artificial Neural Networks Trained to Detect Viral and Phage Structural Proteins

(2012) Victor Seguritan et al.   PLoS Computational Biology

Detecting thermophilic proteins through selecting amino acid and dipeptide composition features

(2011) Songyot Nakariyakul et al.   AMINO ACIDS

Predict and analyze S-nitrosylation modification sites with the mRMR and IFS approaches

(2011) Bi-Qing Li et al.   Journal of Proteomics

iLoc-Virus: A multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites

(2011) Xuan Xiao et al.   JOURNAL OF THEORETICAL BIOLOGY

Identify Golgi Protein Types with Modified Mahalanobis Discriminant Algorithm and Pseudo Amino Acid Composition

(2011) Hui Ding et al.   PROTEIN AND PEPTIDE LETTERS

APIS: accurate prediction of hot spots in protein interfaces by combining protrusion index with solvent accessibility

(2010) Jun-Feng Xia et al.   BMC BIOINFORMATICS

FGsub: Fusarium graminearum protein subcellular localizations predicted from primary structures

(2010) Chenglei Sun et al.   BMC Systems Biology

Prediction of thermophilic proteins using feature selection technique

(2010) Hao Lin et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition

(2010) Hao Lin et al.   JOURNAL OF THEORETICAL BIOLOGY

Some remarks on protein attribute prediction and pseudo amino acid composition

(2010) Kuo-Chen Chou   JOURNAL OF THEORETICAL BIOLOGY

Plant-mPLoc: A Top-Down Strategy to Augment the Power for Predicting Plant Protein Subcellular Localization

(2010) Kuo-Chen Chou et al.   PLoS One

Prediction of Protein Subcellular Locations with Feature Selection and Analysis

(2010) Yudong Cai et al.   PROTEIN AND PEPTIDE LETTERS

Eukaryotic and prokaryotic promoter prediction using hybrid approach

(2010) Hao Lin et al.   THEORY IN BIOSCIENCES

SubChlo: Predicting protein subchloroplast locations with pseudo-amino acid composition and the evidence-theoretic K-nearest neighbor (ET-KNN) algorithm

(2009) Pufeng Du et al.   JOURNAL OF THEORETICAL BIOLOGY

Mutations in fd phage major coat protein modulate affinity of the displayed peptide

(2009) G.A. Kuzmicheva et al.   PROTEIN ENGINEERING DESIGN & SELECTION

An ensemble of reduced alphabets with protein encoding based on grouped weight for predicting DNA-binding proteins

(2008) Loris Nanni et al.   AMINO ACIDS

Combing ontologies and dipeptide composition for predicting DNA-binding proteins

(2008) Loris Nanni et al.   AMINO ACIDS

Genetic programming for creating Chou’s pseudo amino acid based features for submitochondria localization

(2008) Loris Nanni et al.   AMINO ACIDS

A Novel Computational Approach To Predict Transcription Factor DNA Binding Preference

(2008) Yudong Cai et al.   JOURNAL OF PROTEOME RESEARCH

The modified Mahalanobis Discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition

(2008) Hao Lin   JOURNAL OF THEORETICAL BIOLOGY

PseAAC: A flexible web server for generating various kinds of protein pseudo amino acid composition

(2007) Hong-Bin Shen et al.   ANALYTICAL BIOCHEMISTRY